WO2001057269A3 - Nucleic acid detection methods using universal priming - Google Patents
Nucleic acid detection methods using universal priming Download PDFInfo
- Publication number
- WO2001057269A3 WO2001057269A3 PCT/US2001/004056 US0104056W WO0157269A3 WO 2001057269 A3 WO2001057269 A3 WO 2001057269A3 US 0104056 W US0104056 W US 0104056W WO 0157269 A3 WO0157269 A3 WO 0157269A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- nucleic acid
- detection methods
- acid detection
- universal priming
- priming
- Prior art date
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/682—Signal amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6862—Ligase chain reaction [LCR]
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
- Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
- Y10T436/00—Chemistry: analytical and immunological testing
- Y10T436/14—Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
- Y10T436/142222—Hetero-O [e.g., ascorbic acid, etc.]
- Y10T436/143333—Saccharide [e.g., DNA, etc.]
Abstract
Priority Applications (9)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DK01910466T DK1259643T3 (en) | 2000-02-07 | 2001-02-07 | Method for Detecting Nucleic Acid Using Universal Priming |
EP01910466A EP1259643B1 (en) | 2000-02-07 | 2001-02-07 | Nucleic acid detection methods using universal priming |
AU2001238068A AU2001238068A1 (en) | 2000-02-07 | 2001-02-07 | Nucleic acid detection methods using universal priming |
CA2399733A CA2399733C (en) | 2000-02-07 | 2001-02-07 | Nucleic acid detection methods using universal priming |
DE60136166T DE60136166D1 (en) | 2000-02-07 | 2001-02-07 | NUCLEIC ACID PROOF METHOD WITH UNIVERSAL PRIMING |
JP2001555892A JP2003521252A (en) | 2000-02-07 | 2001-02-07 | Nucleic acid detection method using universal priming |
HK02109139.1A HK1047603B (en) | 2000-02-07 | 2002-12-17 | Nucleic acid detection methods using universal priming |
US10/620,852 US20040121364A1 (en) | 2000-02-07 | 2003-07-15 | Multiplex nucleic acid reactions |
US11/036,886 US20050214825A1 (en) | 2000-02-07 | 2005-01-14 | Multiplex sample analysis on universal arrays |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US18081000P | 2000-02-07 | 2000-02-07 | |
US60/180,810 | 2000-02-07 | ||
US23473200P | 2000-09-22 | 2000-09-22 | |
US60/234,732 | 2000-09-22 |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US09/931,285 Continuation-In-Part US6913884B2 (en) | 2000-02-07 | 2001-08-16 | Compositions and methods for repetitive use of genomic DNA |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2001057269A2 WO2001057269A2 (en) | 2001-08-09 |
WO2001057269A3 true WO2001057269A3 (en) | 2002-07-18 |
Family
ID=26876658
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2001/004056 WO2001057269A2 (en) | 2000-02-07 | 2001-02-07 | Nucleic acid detection methods using universal priming |
Country Status (10)
Country | Link |
---|---|
US (5) | US20020006617A1 (en) |
EP (2) | EP1259643B1 (en) |
JP (1) | JP2003521252A (en) |
AT (2) | ATE492652T1 (en) |
AU (1) | AU2001238068A1 (en) |
CA (1) | CA2399733C (en) |
DE (2) | DE60143723D1 (en) |
DK (1) | DK1259643T3 (en) |
HK (1) | HK1047603B (en) |
WO (1) | WO2001057269A2 (en) |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
US9399795B2 (en) | 1998-06-24 | 2016-07-26 | Illumina, Inc. | Multiplex decoding of array sensors with microspheres |
Families Citing this family (335)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1994003624A1 (en) * | 1992-08-04 | 1994-02-17 | Auerbach Jeffrey I | Methods for the isothermal amplification of nucleic acid molecules |
US6261808B1 (en) * | 1992-08-04 | 2001-07-17 | Replicon, Inc. | Amplification of nucleic acid molecules via circular replicons |
US6287850B1 (en) * | 1995-06-07 | 2001-09-11 | Affymetrix, Inc. | Bioarray chip reaction apparatus and its manufacture |
US6720149B1 (en) * | 1995-06-07 | 2004-04-13 | Affymetrix, Inc. | Methods for concurrently processing multiple biological chip assays |
ES2288760T3 (en) | 1996-04-25 | 2008-01-16 | Bioarray Solutions Ltd. | ELECTROCINETIC ASSEMBLY CONTROLLED BY LIGHT OF PARTICLES NEXT TO SURFACES. |
US7612020B2 (en) * | 1998-12-28 | 2009-11-03 | Illumina, Inc. | Composite arrays utilizing microspheres with a hybridization chamber |
US20030207295A1 (en) * | 1999-04-20 | 2003-11-06 | Kevin Gunderson | Detection of nucleic acid reactions on bead arrays |
US20060275782A1 (en) * | 1999-04-20 | 2006-12-07 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US7244559B2 (en) * | 1999-09-16 | 2007-07-17 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
US7211390B2 (en) * | 1999-09-16 | 2007-05-01 | 454 Life Sciences Corporation | Method of sequencing a nucleic acid |
US6618679B2 (en) * | 2000-01-28 | 2003-09-09 | Althea Technologies, Inc. | Methods for analysis of gene expression |
US20050214825A1 (en) * | 2000-02-07 | 2005-09-29 | John Stuelpnagel | Multiplex sample analysis on universal arrays |
US8076063B2 (en) * | 2000-02-07 | 2011-12-13 | Illumina, Inc. | Multiplexed methylation detection methods |
US7955794B2 (en) | 2000-09-21 | 2011-06-07 | Illumina, Inc. | Multiplex nucleic acid reactions |
US6770441B2 (en) * | 2000-02-10 | 2004-08-03 | Illumina, Inc. | Array compositions and methods of making same |
AU2001265121A1 (en) * | 2000-05-30 | 2001-12-11 | Applera Corporation | Methods for detecting target nucleic acids using coupled ligation and amplification |
DE60117556T2 (en) | 2000-06-21 | 2006-11-02 | Bioarray Solutions Ltd. | MULTI-ANALYTIC MOLECULAR ANALYSIS THROUGH THE USE OF APPLICATION SPECIFIC RAPID PARTICLE ARRAYS |
US9709559B2 (en) | 2000-06-21 | 2017-07-18 | Bioarray Solutions, Ltd. | Multianalyte molecular analysis using application-specific random particle arrays |
NZ552462A (en) * | 2000-07-06 | 2008-09-26 | Bio Merieux | Method for controlling the microbiological quality of an aqueous medium and kit therefor |
EP1379692A4 (en) * | 2001-03-30 | 2005-08-31 | Applera Corp | Nucleic acid analysis using non-templated nucleotide addition |
US7572642B2 (en) | 2001-04-18 | 2009-08-11 | Ambrigen, Llc | Assay based on particles, which specifically bind with targets in spatially distributed characteristic patterns |
WO2002090599A1 (en) | 2001-05-09 | 2002-11-14 | Genetic Id, Inc. | Universal microarray system |
US7262063B2 (en) | 2001-06-21 | 2007-08-28 | Bio Array Solutions, Ltd. | Directed assembly of functional heterostructures |
ES2661167T3 (en) | 2001-10-15 | 2018-03-27 | Bioarray Solutions Ltd. | Multiplexed analysis of polymorphic loci by simultaneous consultation and enzyme-mediated detection |
CA2467460A1 (en) | 2001-11-19 | 2003-05-30 | Parallele Bioscience, Inc. | Multiplex oligonucleotide addition and target amplification |
US20110151438A9 (en) | 2001-11-19 | 2011-06-23 | Affymetrix, Inc. | Methods of Analysis of Methylation |
AU2002362013B2 (en) * | 2001-11-21 | 2008-04-24 | Applied Biosystems, Llc. | Digital assay |
EP1860200A1 (en) * | 2001-12-03 | 2007-11-28 | Illumina, Inc. | Multiplexed methylation detection methods |
EP1327682B1 (en) * | 2002-01-11 | 2009-05-13 | BioSpring Gesellschaft für Biotechnologie mbH | Method for producing DNA |
US7771922B2 (en) * | 2002-05-03 | 2010-08-10 | Kimberly-Clark Worldwide, Inc. | Biomolecule diagnostic device |
AU2003269908A1 (en) * | 2002-07-15 | 2004-02-02 | Illumina, Inc. | Multiplex nucleic acid reactions |
CN1182256C (en) * | 2002-08-09 | 2004-12-29 | 周国华 | Gene expression amount comparing analysis method |
JP2005537487A (en) * | 2002-09-03 | 2005-12-08 | ツェプトゼンス アクチエンゲゼルシャフト | Analysis platform and detection method using an analyte measured as an immobilized specific binding partner in a sample after optionally fractionated in the sample |
WO2004027082A2 (en) * | 2002-09-19 | 2004-04-01 | Applera Corporation | Methods and compositions for detecting targets |
US20040259105A1 (en) * | 2002-10-03 | 2004-12-23 | Jian-Bing Fan | Multiplex nucleic acid analysis using archived or fixed samples |
US7526114B2 (en) | 2002-11-15 | 2009-04-28 | Bioarray Solutions Ltd. | Analysis, secure access to, and transmission of array images |
CA2897376A1 (en) * | 2003-02-26 | 2004-09-10 | Radoje T. Drmanac | Modular system and probes for dna analysis |
JP4646904B2 (en) * | 2003-03-07 | 2011-03-09 | ユニバーシティー、オブ、メディシン、アンド、デンティストリー、オブ、ニュージャージー | Optically decodable microcarriers, arrays and methods |
US8003374B2 (en) | 2003-03-25 | 2011-08-23 | The Regents Of The University Of California | Reagentless, reusable, bioelectronic detectors |
US20040191801A1 (en) * | 2003-03-25 | 2004-09-30 | Heeger Alan J. | Reagentless, reusable bioelectronic detectors and their use as authentication devices |
WO2004097371A2 (en) * | 2003-04-25 | 2004-11-11 | Board Of Regents, The University Of Texas System | System and method for the detection of analytes |
EP1636337A4 (en) | 2003-06-20 | 2007-07-04 | Illumina Inc | Methods and compositions for whole genome amplification and genotyping |
WO2005012899A2 (en) * | 2003-07-28 | 2005-02-10 | Applera Corporation | Method for error detection and increased confidence of sample decoding |
ATE419394T1 (en) * | 2003-09-04 | 2009-01-15 | Human Genetic Signatures Pty | NUCLEIC ACID DETECTION TEST |
US7365179B2 (en) * | 2003-09-09 | 2008-04-29 | Compass Genetics, Llc | Multiplexed analytical platform |
AU2004286201B2 (en) * | 2003-09-10 | 2010-09-09 | Altheadx, Inc. | Expression profiling using microarrays |
WO2005026329A2 (en) * | 2003-09-12 | 2005-03-24 | Cornell Research Foundation, Inc. | Methods for identifying target nucleic acid molecules |
WO2005029705A2 (en) | 2003-09-18 | 2005-03-31 | Bioarray Solutions, Ltd. | Number coding for identification of subtypes of coded types of solid phase carriers |
WO2005029040A2 (en) * | 2003-09-18 | 2005-03-31 | Parallele Biosciences, Inc. | System and methods for enhancing signal-to-noise ratios of microarray-based measurements |
AU2004276761B2 (en) | 2003-09-22 | 2009-12-24 | Bioarray Solutions, Ltd. | Surface immobilized polyelectrolyte with multiple functional groups capable of covalently bonding to biomolecules |
AU2004286252A1 (en) | 2003-10-28 | 2005-05-12 | Bioarray Solutions Ltd. | Optimization of gene expression analysis using immobilized capture probes |
AU2004287069B2 (en) | 2003-10-29 | 2009-07-16 | Bioarray Solutions, Ltd. | Multiplexed nucleic acid analysis by fragmentation of double-stranded DNA |
US20050136414A1 (en) * | 2003-12-23 | 2005-06-23 | Kevin Gunderson | Methods and compositions for making locus-specific arrays |
CA2555377A1 (en) | 2004-02-12 | 2005-09-01 | Compass Genetics, Llc | Genetic analysis by sequence-specific sorting |
US20050250147A1 (en) * | 2004-05-10 | 2005-11-10 | Macevicz Stephen C | Digital profiling of polynucleotide populations |
US7622281B2 (en) * | 2004-05-20 | 2009-11-24 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and compositions for clonal amplification of nucleic acid |
US7785843B2 (en) * | 2004-06-23 | 2010-08-31 | Sequenom, Inc. | Target-specific compomers and methods of use |
WO2006005081A2 (en) * | 2004-06-30 | 2006-01-12 | Applera Corporation | Compositions and methods for identifying nucleotides in polynucleotide sequences |
CN101087890A (en) * | 2004-07-26 | 2007-12-12 | 帕拉列勒生物科学公司 | Simultaneous analysis of multiple genomes |
US7848889B2 (en) | 2004-08-02 | 2010-12-07 | Bioarray Solutions, Ltd. | Automated analysis of multiplexed probe-target interaction patterns: pattern matching and allele identification |
US7585664B2 (en) * | 2004-10-14 | 2009-09-08 | The Hong Kong University Of Science And Technology | Integrated circuit optical detector for biological detection |
US7220549B2 (en) * | 2004-12-30 | 2007-05-22 | Helicos Biosciences Corporation | Stabilizing a nucleic acid for nucleic acid sequencing |
US7407757B2 (en) * | 2005-02-10 | 2008-08-05 | Population Genetics Technologies | Genetic analysis by sequence-specific sorting |
EP1856293A2 (en) * | 2005-03-16 | 2007-11-21 | Compass Genetics, Llc | Methods and compositions for assay readouts on multiple analytical platforms |
EP1869219A4 (en) * | 2005-03-31 | 2010-06-23 | Perkinelmer Las Inc | Multiplex assay systems |
US20060246576A1 (en) | 2005-04-06 | 2006-11-02 | Affymetrix, Inc. | Fluidic system and method for processing biological microarrays in personal instrumentation |
AU2006243757B2 (en) * | 2005-05-03 | 2012-02-09 | Altheadx, Inc. | Compositions and methods for the analysis of degraded nucleic acids |
US8486629B2 (en) * | 2005-06-01 | 2013-07-16 | Bioarray Solutions, Ltd. | Creation of functionalized microparticle libraries by oligonucleotide ligation or elongation |
US7368242B2 (en) * | 2005-06-14 | 2008-05-06 | Affymetrix, Inc. | Method and kits for multiplex hybridization assays |
CA2611743C (en) | 2005-06-15 | 2019-12-31 | Callida Genomics, Inc. | Nucleic acid analysis by forming and tracking aliquoted fragments of a target polynucleotide |
US9297036B2 (en) * | 2005-07-01 | 2016-03-29 | Agilent Technologies, Inc | Nucleic acid probes for analysis of small RNAs and other polynucleotides |
US9424392B2 (en) | 2005-11-26 | 2016-08-23 | Natera, Inc. | System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals |
US11111543B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
US11111544B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
CA2621146A1 (en) * | 2005-09-06 | 2007-03-15 | Gen-Probe Incorporated | Methods, compositions and kits for isothermal amplification of nucleic acids |
US20070077582A1 (en) * | 2005-09-16 | 2007-04-05 | Primera Biosystems, Inc. | Method for quantitative detection of short RNA molecules |
US7960104B2 (en) * | 2005-10-07 | 2011-06-14 | Callida Genomics, Inc. | Self-assembled single molecule arrays and uses thereof |
AU2007249635B2 (en) * | 2005-10-07 | 2012-05-31 | Complete Genomics, Inc. | High throughput genome sequencing on DNA arrays |
US20070099193A1 (en) * | 2005-11-01 | 2007-05-03 | Hui Wang | Probe/target stabilization with add-in oligo |
EP1947196A4 (en) * | 2005-11-08 | 2009-09-09 | Olympus Corp | Method of amplifying multiple nucleic acid sequences for differentiation |
WO2007120299A2 (en) * | 2005-11-29 | 2007-10-25 | The Regents Of The University Of California | Signal-on architecture for electronic, oligonucleotide-based detectors |
US20070168197A1 (en) * | 2006-01-18 | 2007-07-19 | Nokia Corporation | Audio coding |
US7537897B2 (en) * | 2006-01-23 | 2009-05-26 | Population Genetics Technologies, Ltd. | Molecular counting |
US7754475B2 (en) * | 2006-01-25 | 2010-07-13 | Agilent Technologies, Inc. | Nucleic acid probes and microarrays for analysis of polynucleotides |
US20070172841A1 (en) * | 2006-01-25 | 2007-07-26 | Hui Wang | Probe/target stabilization with add-in oligo |
WO2007092538A2 (en) | 2006-02-07 | 2007-08-16 | President And Fellows Of Harvard College | Methods for making nucleotide probes for sequencing and synthesis |
SG170028A1 (en) * | 2006-02-24 | 2011-04-29 | Callida Genomics Inc | High throughput genome sequencing on dna arrays |
US8673567B2 (en) * | 2006-03-08 | 2014-03-18 | Atila Biosystems, Inc. | Method and kit for nucleic acid sequence detection |
US7914988B1 (en) | 2006-03-31 | 2011-03-29 | Illumina, Inc. | Gene expression profiles to predict relapse of prostate cancer |
US20090023597A1 (en) * | 2006-04-12 | 2009-01-22 | Siemens Healthcare Diagnostics Inc. | Single Nucleotide Polymorphism Detection from Unamplified Genomic DNA |
CA2653321A1 (en) * | 2006-05-26 | 2007-12-06 | Althea Technologies, Inc. | Biochemical analysis of partitioned cells |
US7833716B2 (en) | 2006-06-06 | 2010-11-16 | Gen-Probe Incorporated | Tagged oligonucleotides and their use in nucleic acid amplification methods |
EP3406736B1 (en) | 2006-06-14 | 2022-09-07 | Verinata Health, Inc. | Methods for the diagnosis of fetal abnormalities |
EP4108780A1 (en) | 2006-06-14 | 2022-12-28 | Verinata Health, Inc. | Rare cell analysis using sample splitting and dna tags |
EP2589668A1 (en) | 2006-06-14 | 2013-05-08 | Verinata Health, Inc | Rare cell analysis using sample splitting and DNA tags |
CA2664649A1 (en) * | 2006-09-28 | 2008-05-08 | Ensemble Discovery Corporation | Compositions and methods for biodetection by nucleic acid-templated chemistry |
WO2008070352A2 (en) | 2006-10-27 | 2008-06-12 | Complete Genomics, Inc. | Efficient arrays of amplified polynucleotides |
US20090105961A1 (en) * | 2006-11-09 | 2009-04-23 | Complete Genomics, Inc. | Methods of nucleic acid identification in large-scale sequencing |
US20090111705A1 (en) * | 2006-11-09 | 2009-04-30 | Complete Genomics, Inc. | Selection of dna adaptor orientation by hybrid capture |
US7902345B2 (en) | 2006-12-05 | 2011-03-08 | Sequenom, Inc. | Detection and quantification of biomolecules using mass spectrometry |
US8133701B2 (en) * | 2006-12-05 | 2012-03-13 | Sequenom, Inc. | Detection and quantification of biomolecules using mass spectrometry |
JP5340167B2 (en) | 2006-12-21 | 2013-11-13 | ジェン−プロウブ インコーポレイテッド | Methods and compositions for nucleic acid amplification |
US20080241831A1 (en) * | 2007-03-28 | 2008-10-02 | Jian-Bing Fan | Methods for detecting small RNA species |
US8003314B2 (en) | 2007-04-16 | 2011-08-23 | Diagnostic Hybrids, Inc. | Methods for direct fluorescent antibody virus detection in liquids |
US20080274458A1 (en) * | 2007-05-01 | 2008-11-06 | Latham Gary J | Nucleic acid quantitation methods |
US7769548B2 (en) * | 2007-05-10 | 2010-08-03 | Illumina, Inc. | Microarray analytical data stitching system and method |
AU2008256851A1 (en) * | 2007-05-23 | 2008-12-04 | Oregon Health & Science University | Microarray systems and methods for identifying DNA-binding proteins |
WO2009011888A2 (en) * | 2007-07-16 | 2009-01-22 | Massachusetts Institute Of Technology | Ruler arrays |
WO2009032781A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for universal size-specific polymerase chain reaction |
US8951731B2 (en) * | 2007-10-15 | 2015-02-10 | Complete Genomics, Inc. | Sequence analysis using decorated nucleic acids |
US8617811B2 (en) | 2008-01-28 | 2013-12-31 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
US8415099B2 (en) | 2007-11-05 | 2013-04-09 | Complete Genomics, Inc. | Efficient base determination in sequencing reactions |
US8518640B2 (en) * | 2007-10-29 | 2013-08-27 | Complete Genomics, Inc. | Nucleic acid sequencing and process |
US20090263872A1 (en) * | 2008-01-23 | 2009-10-22 | Complete Genomics Inc. | Methods and compositions for preventing bias in amplification and sequencing reactions |
US7901890B2 (en) * | 2007-11-05 | 2011-03-08 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors employing selective methylation |
US7897344B2 (en) * | 2007-11-06 | 2011-03-01 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors into library constructs |
WO2009073629A2 (en) | 2007-11-29 | 2009-06-11 | Complete Genomics, Inc. | Efficient shotgun sequencing methods |
US8592150B2 (en) | 2007-12-05 | 2013-11-26 | Complete Genomics, Inc. | Methods and compositions for long fragment read sequencing |
US20090181390A1 (en) * | 2008-01-11 | 2009-07-16 | Signosis, Inc. A California Corporation | High throughput detection of micrornas and use for disease diagnosis |
EP3360972B1 (en) | 2008-01-17 | 2019-12-11 | Sequenom, Inc. | Single molecule nucleic acid sequence analysis processes |
US20090270273A1 (en) * | 2008-04-21 | 2009-10-29 | Complete Genomics, Inc. | Array structures for nucleic acid detection |
JP2009268665A (en) * | 2008-05-07 | 2009-11-19 | Canon Inc | Inhalation device |
US8470164B2 (en) | 2008-06-25 | 2013-06-25 | Life Technologies Corporation | Methods and apparatus for measuring analytes using large scale FET arrays |
EP2408936A4 (en) * | 2009-03-18 | 2013-01-30 | Sequenom Inc | Use of thermostable endonucleases for generating reporter molecules |
US20110171619A1 (en) * | 2009-05-28 | 2011-07-14 | Daniel Leo Sweeney | Representation of molecules as sets of masses of complementary subgroups and contiguous complementary subgroups |
US9524369B2 (en) | 2009-06-15 | 2016-12-20 | Complete Genomics, Inc. | Processing and analysis of complex nucleic acid sequence data |
EP2789689B1 (en) | 2009-06-29 | 2016-04-27 | Luminex Corporation | Chimeric primers with hairpin conformations and methods of using same |
US9169512B2 (en) | 2009-07-01 | 2015-10-27 | Gen-Probe Incorporated | Methods and compositions for nucleic acid amplification |
EP2280079A1 (en) * | 2009-07-31 | 2011-02-02 | Qiagen GmbH | Ligation-based method of normalized quantification of nucleic acids |
EP2280081A1 (en) * | 2009-07-31 | 2011-02-02 | Qiagen GmbH | Method of normalized quantification of RNA |
EP2280080A1 (en) | 2009-07-31 | 2011-02-02 | Qiagen GmbH | Method of normalized quantification of nucleic acids using anchor oligonucleotides and adapter oligonucleotides |
US9487839B2 (en) * | 2009-09-29 | 2016-11-08 | Case Western Reserve University | Method for detecting single nucleotide polymorphisms |
US8975019B2 (en) * | 2009-10-19 | 2015-03-10 | University Of Massachusetts | Deducing exon connectivity by RNA-templated DNA ligation/sequencing |
EP2496720B1 (en) | 2009-11-06 | 2020-07-08 | The Board of Trustees of the Leland Stanford Junior University | Non-invasive diagnosis of graft rejection in organ transplant patients |
CN102648295B (en) * | 2009-12-07 | 2017-08-08 | 伊鲁米那股份有限公司 | Multi-example for multiple gene parting is indexed |
US8835358B2 (en) | 2009-12-15 | 2014-09-16 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse labels |
US9315857B2 (en) | 2009-12-15 | 2016-04-19 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse label-tags |
WO2011091106A2 (en) * | 2010-01-22 | 2011-07-28 | The Regents Of The University Of California | Compositions and methods for gene signature - based chemical screening |
WO2011097528A1 (en) * | 2010-02-05 | 2011-08-11 | Institute For Systems Biology | Methods and compositions for profiling rna molecules |
US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
CA2794522C (en) | 2010-04-05 | 2019-11-26 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US11332785B2 (en) | 2010-05-18 | 2022-05-17 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
US20190010543A1 (en) | 2010-05-18 | 2019-01-10 | Natera, Inc. | Methods for simultaneous amplification of target loci |
US11326208B2 (en) | 2010-05-18 | 2022-05-10 | Natera, Inc. | Methods for nested PCR amplification of cell-free DNA |
US11339429B2 (en) | 2010-05-18 | 2022-05-24 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
US11408031B2 (en) | 2010-05-18 | 2022-08-09 | Natera, Inc. | Methods for non-invasive prenatal paternity testing |
US11332793B2 (en) | 2010-05-18 | 2022-05-17 | Natera, Inc. | Methods for simultaneous amplification of target loci |
CA2798758C (en) | 2010-05-18 | 2019-05-07 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
US9677118B2 (en) | 2014-04-21 | 2017-06-13 | Natera, Inc. | Methods for simultaneous amplification of target loci |
US11939634B2 (en) | 2010-05-18 | 2024-03-26 | Natera, Inc. | Methods for simultaneous amplification of target loci |
US11322224B2 (en) | 2010-05-18 | 2022-05-03 | Natera, Inc. | Methods for non-invasive prenatal ploidy calling |
US10316362B2 (en) | 2010-05-18 | 2019-06-11 | Natera, Inc. | Methods for simultaneous amplification of target loci |
WO2012012703A2 (en) * | 2010-07-23 | 2012-01-26 | Esoterix Genetic Laboratories, Llc | Identification of differentially represented fetal or maternal genomic regions and uses thereof |
US10533223B2 (en) | 2010-08-06 | 2020-01-14 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
US8700338B2 (en) | 2011-01-25 | 2014-04-15 | Ariosa Diagnosis, Inc. | Risk calculation for evaluation of fetal aneuploidy |
US20120034603A1 (en) * | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
US20140342940A1 (en) | 2011-01-25 | 2014-11-20 | Ariosa Diagnostics, Inc. | Detection of Target Nucleic Acids using Hybridization |
US11031095B2 (en) | 2010-08-06 | 2021-06-08 | Ariosa Diagnostics, Inc. | Assay systems for determination of fetal copy number variation |
US20130040375A1 (en) | 2011-08-08 | 2013-02-14 | Tandem Diagnotics, Inc. | Assay systems for genetic analysis |
US10167508B2 (en) * | 2010-08-06 | 2019-01-01 | Ariosa Diagnostics, Inc. | Detection of genetic abnormalities |
US20130261003A1 (en) * | 2010-08-06 | 2013-10-03 | Ariosa Diagnostics, In. | Ligation-based detection of genetic variants |
US11203786B2 (en) | 2010-08-06 | 2021-12-21 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
CN110878345A (en) | 2010-09-21 | 2020-03-13 | 安捷伦科技有限公司 | Increasing confidence in allele calls by molecular counting |
WO2012054933A2 (en) * | 2010-10-22 | 2012-04-26 | Fluidigm Corporation | Universal probe assay methods |
US20120190021A1 (en) * | 2011-01-25 | 2012-07-26 | Aria Diagnostics, Inc. | Detection of genetic abnormalities |
US10131947B2 (en) | 2011-01-25 | 2018-11-20 | Ariosa Diagnostics, Inc. | Noninvasive detection of fetal aneuploidy in egg donor pregnancies |
US11270781B2 (en) | 2011-01-25 | 2022-03-08 | Ariosa Diagnostics, Inc. | Statistical analysis for non-invasive sex chromosome aneuploidy determination |
US8756020B2 (en) | 2011-01-25 | 2014-06-17 | Ariosa Diagnostics, Inc. | Enhanced risk probabilities using biomolecule estimations |
US9994897B2 (en) | 2013-03-08 | 2018-06-12 | Ariosa Diagnostics, Inc. | Non-invasive fetal sex determination |
WO2012122571A1 (en) | 2011-03-10 | 2012-09-13 | Gen-Probe Incorporated | Methods and compositions for the selection and optimization of oligonucleotide tag sequences |
GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
WO2012145574A2 (en) | 2011-04-20 | 2012-10-26 | Life Technologies Corporation | Methods, compositions and systems for sample deposition |
WO2012170936A2 (en) | 2011-06-09 | 2012-12-13 | Illumina, Inc. | Patterned flow-cells useful for nucleic acid analysis |
JP6404714B2 (en) * | 2011-06-24 | 2018-10-17 | ナノストリング テクノロジーズ,インコーポレイティド | Multivariate diagnostic assay and method for using the same |
US8712697B2 (en) | 2011-09-07 | 2014-04-29 | Ariosa Diagnostics, Inc. | Determination of copy number variations using binomial probability calculations |
AU2012312353A1 (en) | 2011-09-22 | 2014-04-10 | Lineage Biosciences, Inc. | Compositions and methods for analyzing heterogeneous samples |
US9335292B2 (en) | 2011-10-13 | 2016-05-10 | Auburn University | Electrochemical proximity assay |
US8778849B2 (en) | 2011-10-28 | 2014-07-15 | Illumina, Inc. | Microarray fabrication system and method |
EP2788499B1 (en) | 2011-12-09 | 2016-01-13 | Illumina, Inc. | Expanded radix for polymeric tags |
EP2820174B1 (en) | 2012-02-27 | 2019-12-25 | The University of North Carolina at Chapel Hill | Methods and uses for molecular tags |
GB2504240B (en) | 2012-02-27 | 2015-05-27 | Cellular Res Inc | Compositions and kits for molecular counting of nucleic acids |
EP3287531B1 (en) | 2012-02-28 | 2019-06-19 | Agilent Technologies, Inc. | Method for attaching a counter sequence to a nucleic acid sample |
US10289800B2 (en) | 2012-05-21 | 2019-05-14 | Ariosa Diagnostics, Inc. | Processes for calculating phased fetal genomic sequences |
US9012022B2 (en) | 2012-06-08 | 2015-04-21 | Illumina, Inc. | Polymer coatings |
US8895249B2 (en) | 2012-06-15 | 2014-11-25 | Illumina, Inc. | Kinetic exclusion amplification of nucleic acid libraries |
ES2637538T3 (en) * | 2012-07-17 | 2017-10-13 | Counsyl, Inc. | System and methods for the detection of a genetic variation |
WO2014015269A1 (en) | 2012-07-19 | 2014-01-23 | Ariosa Diagnostics, Inc. | Multiplexed sequential ligation-based detection of genetic variants |
JP6392222B2 (en) * | 2012-07-24 | 2018-09-19 | ナテラ, インコーポレイテッド | Advanced multiplex PCR methods and compositions |
US10876152B2 (en) | 2012-09-04 | 2020-12-29 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
EP3591073B1 (en) | 2012-09-04 | 2021-12-01 | Guardant Health, Inc. | Methods to detect rare mutations and copy number variation |
US11913065B2 (en) | 2012-09-04 | 2024-02-27 | Guardent Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
US20160040229A1 (en) | 2013-08-16 | 2016-02-11 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
US9181583B2 (en) | 2012-10-23 | 2015-11-10 | Illumina, Inc. | HLA typing using selective amplification and sequencing |
US9222122B2 (en) | 2012-11-20 | 2015-12-29 | Src, Inc. | System and method for rapid detection and identification of nucleic acid labeled tags |
US9683230B2 (en) | 2013-01-09 | 2017-06-20 | Illumina Cambridge Limited | Sample preparation on a solid support |
US9512422B2 (en) | 2013-02-26 | 2016-12-06 | Illumina, Inc. | Gel patterned surfaces |
PL2969479T3 (en) | 2013-03-13 | 2021-12-27 | Illumina, Inc. | Multilayer fluidic devices and methods for their fabrication |
US9146248B2 (en) | 2013-03-14 | 2015-09-29 | Intelligent Bio-Systems, Inc. | Apparatus and methods for purging flow cells in nucleic acid sequencing instruments |
US20140274747A1 (en) | 2013-03-15 | 2014-09-18 | Illumina, Inc. | Super resolution imaging |
US9193998B2 (en) | 2013-03-15 | 2015-11-24 | Illumina, Inc. | Super resolution imaging |
US9591268B2 (en) | 2013-03-15 | 2017-03-07 | Qiagen Waltham, Inc. | Flow cell alignment methods and systems |
DK2970958T3 (en) | 2013-03-15 | 2018-02-19 | Lineage Biosciences Inc | METHODS FOR SEQUENCING THE IMMUN REPERTOIR |
US9879313B2 (en) | 2013-06-25 | 2018-01-30 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
KR102266002B1 (en) | 2013-07-01 | 2021-06-16 | 일루미나, 인코포레이티드 | Catalyst-free surface functionalization and polymer grafting |
CN105659091A (en) | 2013-08-19 | 2016-06-08 | 卓异生物公司 | Biomarkers for cognitive dysfunction diseases and method for detecting cognitive dysfunction disease using biomarkers |
KR102536833B1 (en) | 2013-08-28 | 2023-05-26 | 벡톤 디킨슨 앤드 컴퍼니 | Massively parallel single cell analysis |
CA2920390A1 (en) | 2013-08-30 | 2015-03-05 | Illumina, Inc. | Manipulation of droplets on hydrophilic or variegated-hydrophilic surfaces |
CN105745528A (en) | 2013-10-07 | 2016-07-06 | 赛卢拉研究公司 | Methods and systems for digitally counting features on arrays |
CN106132555B (en) | 2013-11-11 | 2019-07-26 | 生命科技股份有限公司 | Rotor stack and its application method |
WO2015081178A1 (en) | 2013-11-26 | 2015-06-04 | Illumina, Inc. | Compositions and methods for polynucleotide sequencing |
US20180073065A1 (en) | 2013-12-23 | 2018-03-15 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
EP3524694B1 (en) | 2013-12-28 | 2020-07-15 | Guardant Health, Inc. | Methods and systems for detecting genetic variants |
KR102001554B1 (en) | 2014-01-16 | 2019-07-18 | 일루미나, 인코포레이티드 | Amplicon preparation and sequencing on solid supports |
EP3094747B1 (en) | 2014-01-16 | 2018-11-07 | Illumina, Inc. | Gene expression panel for prognosis of prostate cancer recurrence |
US9677132B2 (en) | 2014-01-16 | 2017-06-13 | Illumina, Inc. | Polynucleotide modification on solid support |
RU2717641C2 (en) | 2014-04-21 | 2020-03-24 | Натера, Инк. | Detection of mutations and ploidy in chromosomal segments |
PL3169805T3 (en) | 2014-07-15 | 2019-01-31 | Illumina, Inc. | Biochemically activated electronic device |
WO2016026924A1 (en) | 2014-08-21 | 2016-02-25 | Illumina Cambridge Limited | Reversible surface functionalization |
CA2965578C (en) | 2014-10-31 | 2024-03-19 | Illumina Cambridge Limited | Polymers and dna copolymer coatings |
JP6616574B2 (en) * | 2015-01-30 | 2019-12-04 | 倉敷紡績株式会社 | Visually identifiable genetic test |
CN107735497B (en) | 2015-02-18 | 2021-08-20 | 卓异生物公司 | Assays for single molecule detection and uses thereof |
EP3259371B1 (en) | 2015-02-19 | 2020-09-02 | Becton, Dickinson and Company | High-throughput single-cell analysis combining proteomic and genomic information |
EP3262192B1 (en) | 2015-02-27 | 2020-09-16 | Becton, Dickinson and Company | Spatially addressable molecular barcoding |
EP4180535A1 (en) | 2015-03-30 | 2023-05-17 | Becton, Dickinson and Company | Methods and compositions for combinatorial barcoding |
EP4321627A3 (en) | 2015-04-10 | 2024-04-17 | 10x Genomics Sweden AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US10900030B2 (en) | 2015-04-14 | 2021-01-26 | Illumina, Inc. | Structured substrates for improving detection of light emissions and methods relating to the same |
EP3286326A1 (en) | 2015-04-23 | 2018-02-28 | Cellular Research, Inc. | Methods and compositions for whole transcriptome amplification |
US11479812B2 (en) | 2015-05-11 | 2022-10-25 | Natera, Inc. | Methods and compositions for determining ploidy |
US11124823B2 (en) | 2015-06-01 | 2021-09-21 | Becton, Dickinson And Company | Methods for RNA quantification |
WO2016201142A1 (en) | 2015-06-09 | 2016-12-15 | Life Technologies Corporation | Methods, systems, compositions, kits, apparatus and computer-readable media for molecular tagging |
CN107924121B (en) | 2015-07-07 | 2021-06-08 | 亿明达股份有限公司 | Selective surface patterning via nanoimprinting |
ES2945607T3 (en) | 2015-07-17 | 2023-07-04 | Illumina Inc | Polymer sheets for sequencing applications |
CN107921432A (en) | 2015-09-02 | 2018-04-17 | 伊卢米纳剑桥有限公司 | Improve the system and method for the droplet manipulation in flow control system |
US10619186B2 (en) | 2015-09-11 | 2020-04-14 | Cellular Research, Inc. | Methods and compositions for library normalization |
US11371094B2 (en) | 2015-11-19 | 2022-06-28 | 10X Genomics, Inc. | Systems and methods for nucleic acid processing using degenerate nucleotides |
WO2017106768A1 (en) | 2015-12-17 | 2017-06-22 | Guardant Health, Inc. | Methods to determine tumor gene copy number by analysis of cell-free dna |
CN109072300B (en) | 2015-12-17 | 2023-01-31 | 伊路敏纳公司 | Differentiating methylation levels in complex biological samples |
WO2017192387A1 (en) | 2016-05-02 | 2017-11-09 | Cellular Research, Inc. | Accurate molecular barcoding |
WO2017201198A1 (en) | 2016-05-18 | 2017-11-23 | Illumina, Inc. | Self assembled patterning using patterned hydrophobic surfaces |
US10301677B2 (en) | 2016-05-25 | 2019-05-28 | Cellular Research, Inc. | Normalization of nucleic acid libraries |
US11397882B2 (en) | 2016-05-26 | 2022-07-26 | Becton, Dickinson And Company | Molecular label counting adjustment methods |
US10640763B2 (en) | 2016-05-31 | 2020-05-05 | Cellular Research, Inc. | Molecular indexing of internal sequences |
US10202641B2 (en) | 2016-05-31 | 2019-02-12 | Cellular Research, Inc. | Error correction in amplification of samples |
SG11201901733PA (en) | 2016-09-26 | 2019-04-29 | Cellular Res Inc | Measurement of protein expression using reagents with barcoded oligonucleotide sequences |
WO2018067517A1 (en) | 2016-10-04 | 2018-04-12 | Natera, Inc. | Methods for characterizing copy number variation using proximity-litigation sequencing |
KR20190077061A (en) | 2016-11-08 | 2019-07-02 | 셀룰러 리서치, 인크. | Cell labeling method |
CN117594126A (en) | 2016-11-08 | 2024-02-23 | 贝克顿迪金森公司 | Method for classifying expression profiles |
US10011870B2 (en) | 2016-12-07 | 2018-07-03 | Natera, Inc. | Compositions and methods for identifying nucleic acid molecules |
US10815525B2 (en) | 2016-12-22 | 2020-10-27 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
US10550429B2 (en) | 2016-12-22 | 2020-02-04 | 10X Genomics, Inc. | Methods and systems for processing polynucleotides |
GB201704754D0 (en) | 2017-01-05 | 2017-05-10 | Illumina Inc | Kinetic exclusion amplification of nucleic acid libraries |
ES2961580T3 (en) | 2017-01-13 | 2024-03-12 | Cellular Res Inc | Hydrophilic coating of fluid channels |
WO2018136117A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Allele-specific capture of nucleic acids |
US11319583B2 (en) | 2017-02-01 | 2022-05-03 | Becton, Dickinson And Company | Selective amplification using blocking oligonucleotides |
US10852274B2 (en) | 2017-03-09 | 2020-12-01 | Auburn University | Differential circuit for background correction in electrochemical measurements |
CN110612351B (en) * | 2017-03-20 | 2023-08-11 | Illumina公司 | Methods and compositions for preparing nucleic acid libraries |
CN106929593B (en) * | 2017-04-27 | 2021-04-30 | 华侨大学 | In-situ nucleic acid detection method |
AU2018281745B2 (en) | 2017-06-05 | 2022-05-19 | Becton, Dickinson And Company | Sample indexing for single cells |
WO2019010341A1 (en) | 2017-07-07 | 2019-01-10 | Innamed, Inc. | Aptamers for measuring lipoprotein levels |
US11352668B2 (en) | 2017-08-01 | 2022-06-07 | Illumina, Inc. | Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells |
SG11201911871TA (en) | 2017-08-01 | 2020-01-30 | Illumina Inc | Hydrogel beads for nucleotide sequencing |
CN109486922B (en) * | 2017-09-08 | 2022-07-29 | 深圳华大因源医药科技有限公司 | Method for detecting microbial target sequence based on single primer probe capture |
WO2019126209A1 (en) | 2017-12-19 | 2019-06-27 | Cellular Research, Inc. | Particles associated with oligonucleotides |
WO2019157529A1 (en) | 2018-02-12 | 2019-08-15 | 10X Genomics, Inc. | Methods characterizing multiple analytes from individual cells or cell populations |
CN111094589A (en) | 2018-02-13 | 2020-05-01 | 伊鲁米纳公司 | DNA sequencing Using hydrogel beads |
WO2019200326A1 (en) | 2018-04-13 | 2019-10-17 | Rarecyte, Inc. | Kits for labeling of biomarkers and methods of using the same |
RU2750567C2 (en) | 2018-04-20 | 2021-06-29 | Иллумина, Инк. | Methods for encapsulating single cells, encapsulated cells, and methods of application thereof |
WO2019213237A1 (en) | 2018-05-03 | 2019-11-07 | Becton, Dickinson And Company | Molecular barcoding on opposite transcript ends |
JP7407128B2 (en) | 2018-05-03 | 2023-12-28 | ベクトン・ディキンソン・アンド・カンパニー | High-throughput multi-omics sample analysis |
EP3807420A1 (en) | 2018-06-12 | 2021-04-21 | Keygene N.V. | Nucleic acid amplification method |
US11560565B2 (en) | 2018-06-13 | 2023-01-24 | Auburn University | Electrochemical detection nanostructure, systems, and uses thereof |
US11525159B2 (en) | 2018-07-03 | 2022-12-13 | Natera, Inc. | Methods for detection of donor-derived cell-free DNA |
US20200032335A1 (en) | 2018-07-27 | 2020-01-30 | 10X Genomics, Inc. | Systems and methods for metabolome analysis |
CN112770776A (en) | 2018-07-30 | 2021-05-07 | 瑞德库尔有限责任公司 | Method and system for sample processing or analysis |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
CN112805389A (en) | 2018-10-01 | 2021-05-14 | 贝克顿迪金森公司 | Determination of 5' transcript sequences |
US11085036B2 (en) | 2018-10-26 | 2021-08-10 | Illumina, Inc. | Modulating polymer beads for DNA processing |
JP2022506546A (en) | 2018-11-08 | 2022-01-17 | ベクトン・ディキンソン・アンド・カンパニー | Single-cell whole transcriptome analysis using random priming |
SG11202102700TA (en) | 2018-11-30 | 2021-04-29 | Illumina Inc | Analysis of multiple analytes using a single assay |
CA3103736A1 (en) | 2018-12-05 | 2020-06-11 | Illumina Cambridge Limited | Methods and compositions for cluster generation by bridge amplification |
WO2020123309A1 (en) | 2018-12-10 | 2020-06-18 | 10X Genomics, Inc. | Resolving spatial arrays by proximity-based deconvolution |
EP3894552A1 (en) | 2018-12-13 | 2021-10-20 | Becton, Dickinson and Company | Selective extension in single cell whole transcriptome analysis |
CA3103633A1 (en) | 2018-12-18 | 2020-06-25 | Illumina Cambridge Limited | Methods and compositions for paired end sequencing using a single surface primer |
PL3899037T3 (en) | 2018-12-19 | 2024-04-08 | Illumina, Inc. | Methods for improving polynucleotide cluster clonality priority |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11845983B1 (en) | 2019-01-09 | 2023-12-19 | 10X Genomics, Inc. | Methods and systems for multiplexing of droplet based assays |
WO2020150356A1 (en) | 2019-01-16 | 2020-07-23 | Becton, Dickinson And Company | Polymerase chain reaction normalization through primer titration |
ES2945227T3 (en) | 2019-01-23 | 2023-06-29 | Becton Dickinson Co | Antibody Associated Oligonucleotides |
US11851683B1 (en) | 2019-02-12 | 2023-12-26 | 10X Genomics, Inc. | Methods and systems for selective analysis of cellular samples |
CA3127572A1 (en) | 2019-02-21 | 2020-08-27 | Keygene N.V. | Genotyping of polyploids |
BR112021012755A2 (en) | 2019-07-12 | 2022-04-26 | Illumina Cambridge Ltd | Compositions and methods for preparing nucleic acid sequencing libraries using crispr/cas9 immobilized on a solid support |
US11939622B2 (en) | 2019-07-22 | 2024-03-26 | Becton, Dickinson And Company | Single cell chromatin immunoprecipitation sequencing assay |
CN110592201A (en) * | 2019-10-30 | 2019-12-20 | 上海千履基因科技有限公司 | PCR amplification method of one-tube type high-specificity nucleic acid product, rapid nucleic acid detection method and nucleic acid detection test strip |
WO2021092433A2 (en) | 2019-11-08 | 2021-05-14 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
US11773436B2 (en) | 2019-11-08 | 2023-10-03 | Becton, Dickinson And Company | Using random priming to obtain full-length V(D)J information for immune repertoire sequencing |
CN114885610A (en) | 2019-12-23 | 2022-08-09 | 10X基因组学有限公司 | Methods for spatial analysis using RNA templated ligation |
CN115244184A (en) | 2020-01-13 | 2022-10-25 | 贝克顿迪金森公司 | Methods and compositions for quantifying protein and RNA |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
WO2021216708A1 (en) | 2020-04-22 | 2021-10-28 | 10X Genomics, Inc. | Methods for spatial analysis using targeted rna depletion |
WO2021231779A1 (en) | 2020-05-14 | 2021-11-18 | Becton, Dickinson And Company | Primers for immune repertoire profiling |
EP4153775A1 (en) | 2020-05-22 | 2023-03-29 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
WO2021237087A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
EP4162074B1 (en) | 2020-06-08 | 2024-04-24 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
EP4165207A1 (en) | 2020-06-10 | 2023-04-19 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
WO2021263111A1 (en) | 2020-06-25 | 2021-12-30 | 10X Genomics, Inc. | Spatial analysis of dna methylation |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
US11932901B2 (en) | 2020-07-13 | 2024-03-19 | Becton, Dickinson And Company | Target enrichment using nucleic acid probes for scRNAseq |
CA3190588A1 (en) | 2020-08-06 | 2022-02-10 | Illumina, Inc. | Preparation of rna and dna sequencing libraries using bead-linked transposomes |
AU2021329302A1 (en) | 2020-08-18 | 2023-02-16 | Illumina Cambridge Limited | Sequence-specific targeted transposition and selection and sorting of nucleic acids |
WO2022053610A1 (en) | 2020-09-11 | 2022-03-17 | Illumina Cambridge Limited | Methods of enriching a target sequence from a sequencing library using hairpin adaptors |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
EP4247967A1 (en) | 2020-11-20 | 2023-09-27 | Becton, Dickinson and Company | Profiling of highly expressed and lowly expressed proteins |
WO2022140028A1 (en) | 2020-12-21 | 2022-06-30 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
CA3208854A1 (en) | 2021-02-04 | 2022-08-11 | Illumina, Inc. | Long indexed-linked read generation on transposome bound beads |
CA3210451A1 (en) | 2021-03-22 | 2022-09-29 | Illumina Cambridge Limited | Methods for improving nucleic acid cluster clonality |
WO2022212280A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc. | Compositions and methods for assessing dna damage in a library and normalizing amplicon size bias |
CA3214278A1 (en) | 2021-03-29 | 2022-10-06 | Illumina, Inc | Improved methods of library preparation |
BR112023019945A2 (en) | 2021-03-31 | 2023-11-14 | Illumina Cambridge Ltd | METHODS FOR PREPARING SEQUENCING LIBRARIES BY DIRECTIONAL TAGGING USING TRANSPOSON-BASED TECHNOLOGY WITH UNIQUE MOLECULAR IDENTIFIERS FOR ERROR CORRECTION |
EP4343002A1 (en) * | 2021-05-21 | 2024-03-27 | 10K Genomics | Composition and method for analyzing target molecule from sample |
WO2022265994A1 (en) | 2021-06-15 | 2022-12-22 | Illumina, Inc. | Hydrogel-free surface functionalization for sequencing |
WO2023004357A1 (en) | 2021-07-23 | 2023-01-26 | Illumina, Inc. | Methods for preparing substrate surface for dna sequencing |
CN113463203A (en) * | 2021-07-27 | 2021-10-01 | 华侨大学 | Construction method of in-situ sequencing library for realizing multiple RNA in-situ detection |
WO2023034489A1 (en) | 2021-09-01 | 2023-03-09 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
WO2023069927A1 (en) | 2021-10-20 | 2023-04-27 | Illumina, Inc. | Methods for capturing library dna for sequencing |
CA3223362A1 (en) | 2022-01-20 | 2023-07-27 | Xiaolin Wu | Methods of detecting methylcytosine and hydroxymethylcytosine by sequencing |
WO2023220056A1 (en) * | 2022-05-10 | 2023-11-16 | Northwestern University | Organic electrochemical transistor as an on-site signal amplifier for electrochemical aptamer-based sensors |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1996015271A1 (en) * | 1994-11-16 | 1996-05-23 | Abbott Laboratories | Multiplex ligations-dependent amplification |
WO1997045559A1 (en) * | 1996-05-29 | 1997-12-04 | Cornell Research Foundation, Inc. | Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions |
WO1998004746A1 (en) * | 1996-07-31 | 1998-02-05 | Mount Sinai School Of Medicine Of The City University Of New York | Nucleic acid amplification method: ramification-extension amplification method (ram) |
Family Cites Families (138)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4200110A (en) | 1977-11-28 | 1980-04-29 | United States Of America | Fiber optic pH probe |
FI63596C (en) * | 1981-10-16 | 1983-07-11 | Orion Yhtymae Oy | MICROBIA DIAGNOSIS FOERFARANDE SOM GRUNDAR SIG PAO SKIKTSHYBRIDISERING AV NUCLEINSYROR OCH VID FOERFARANDET ANVAENDA KOMBINATIONER AV REAGENSER |
US4499052A (en) | 1982-08-30 | 1985-02-12 | Becton, Dickinson And Company | Apparatus for distinguishing multiple subpopulations of cells |
US4687732A (en) * | 1983-06-10 | 1987-08-18 | Yale University | Visualization polymers and their application to diagnostic medicine |
US4582789A (en) * | 1984-03-21 | 1986-04-15 | Cetus Corporation | Process for labeling nucleic acids using psoralen derivatives |
US5242794A (en) * | 1984-12-13 | 1993-09-07 | Applied Biosystems, Inc. | Detection of specific sequences in nucleic acids |
US4751177A (en) * | 1985-06-13 | 1988-06-14 | Amgen | Methods and kits for performing nucleic acid hybridization assays |
US4682895A (en) | 1985-08-06 | 1987-07-28 | Texas A&M University | Fiber optic probe for quantification of colorimetric reactions |
US4882269A (en) * | 1985-12-13 | 1989-11-21 | Princeton University | Amplified hybridization assay |
US4798738A (en) | 1986-10-10 | 1989-01-17 | Cardiovascular Devices, Inc. | Micro sensor |
US4824789B1 (en) | 1986-10-10 | 1996-08-13 | Minnesota Mining & Mfg | Gas sensor |
US5252494A (en) | 1986-06-25 | 1993-10-12 | Trustees Of Tufts College | Fiber optic sensors, apparatus, and detection methods using controlled release polymers and reagent formulations held within a polymeric reaction matrix |
US5114864A (en) | 1986-06-25 | 1992-05-19 | Trustees Of Tufts College | Fiber optic sensors, apparatus, and detection methods using fluid erodible controlled release polymers for delivery of reagent formulations |
US5254477A (en) | 1986-06-25 | 1993-10-19 | Trustees Of Tufts College | Flourescence intramolecular energy transfer conjugate compositions and detection methods |
US4822746A (en) | 1986-06-25 | 1989-04-18 | Trustees Of Tufts College | Radiative and non-radiative energy transfer and absorbance modulated fluorescence detection methods and sensors |
US5143853A (en) | 1986-06-25 | 1992-09-01 | Trustees Of Tufts College | Absorbance modulated fluorescence detection methods and sensors |
EP0269764B1 (en) | 1986-12-01 | 1991-08-28 | Molecular Biosystems, Inc. | Method for increasing the sensitivity of nucleic acid hybridization assays |
SE458968B (en) | 1987-06-16 | 1989-05-22 | Wallac Oy | BIOSPECIFIC ANALYTICAL PROCEDURE FOR MULTIPLE ANALYTICS WHICH DO NOT INCLUDE PARTICULAR COATING AND LABELING WITH FLUORESCING LABEL SUBSTANCES |
US5194300A (en) | 1987-07-15 | 1993-03-16 | Cheung Sau W | Methods of making fluorescent microspheres |
US5132242A (en) | 1987-07-15 | 1992-07-21 | Cheung Sau W | Fluorescent microspheres and methods of using them |
US4921805A (en) * | 1987-07-29 | 1990-05-01 | Life Technologies, Inc. | Nucleic acid capture method |
US4785814A (en) | 1987-08-11 | 1988-11-22 | Cordis Corporation | Optical probe for measuring pH and oxygen in blood and employing a composite membrane |
US5403711A (en) * | 1987-11-30 | 1995-04-04 | University Of Iowa Research Foundation | Nucleic acid hybridization and amplification method for detection of specific sequences in which a complementary labeled nucleic acid probe is cleaved |
US5104791A (en) * | 1988-02-09 | 1992-04-14 | E. I. Du Pont De Nemours And Company | Particle counting nucleic acid hybridization assays |
US4988617A (en) * | 1988-03-25 | 1991-01-29 | California Institute Of Technology | Method of detecting a nucleotide change in nucleic acids |
US5002867A (en) | 1988-04-25 | 1991-03-26 | Macevicz Stephen C | Nucleic acid sequence determination by multiple mixed oligonucleotide probes |
NO164622C (en) | 1988-05-11 | 1990-10-24 | Tore Lindmo | BINAER IMMUNOMETRIC PARTICLE-BASED METHOD FOR MEASURING SPECIFIC SERUM ANTIGENS USING LIQUID FLOW MICROPHOTOMETRY AND A PREPARED TARGET SET UP THEREOF. |
US5185243A (en) * | 1988-08-25 | 1993-02-09 | Syntex (U.S.A.) Inc. | Method for detection of specific nucleic acid sequences |
US5575849A (en) | 1988-11-25 | 1996-11-19 | Canon Kabushiki Kaisha | Apparatus for producing a substrate having a surface with a plurality of spherical dimples for photoconductive members |
EP0392546A3 (en) | 1989-04-14 | 1991-09-11 | Ro Institut Za Molekularnu Genetiku I Geneticko Inzenjerstvo | Process for determination of a complete or a partial contents of very short sequences in the samples of nucleic acids connected to the discrete particles of microscopic size by hybridization with oligonucleotide probes |
US5871928A (en) * | 1989-06-07 | 1999-02-16 | Fodor; Stephen P. A. | Methods for nucleic acid analysis |
US5744101A (en) * | 1989-06-07 | 1998-04-28 | Affymax Technologies N.V. | Photolabile nucleoside protecting groups |
US5143854A (en) * | 1989-06-07 | 1992-09-01 | Affymax Technologies N.V. | Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof |
US5800992A (en) * | 1989-06-07 | 1998-09-01 | Fodor; Stephen P.A. | Method of detecting nucleic acids |
US5302509A (en) | 1989-08-14 | 1994-04-12 | Beckman Instruments, Inc. | Method for sequencing polynucleotides |
US5232829A (en) * | 1989-09-29 | 1993-08-03 | Hoffmann-La Roche Inc. | Detection of chlamydia trachomatis by polymerase chain reaction using biotin labelled lina primers and capture probes |
US5427930A (en) * | 1990-01-26 | 1995-06-27 | Abbott Laboratories | Amplification of target nucleic acids using gap filling ligase chain reaction |
KR950013953B1 (en) * | 1990-01-26 | 1995-11-18 | 애보트 래보라토리즈 | Method of amplifying target nucleic acids applicable to ligase chain reactions |
US5326692B1 (en) | 1992-05-13 | 1996-04-30 | Molecular Probes Inc | Fluorescent microparticles with controllable enhanced stokes shift |
US5387505A (en) * | 1990-05-04 | 1995-02-07 | Eastman Kodak Company | Preparation and isolation of single-stranded biotinylated nucleic acids by heat avidin-biotin cleavage |
US5494810A (en) | 1990-05-03 | 1996-02-27 | Cornell Research Foundation, Inc. | Thermostable ligase-mediated DNA amplifications system for the detection of genetic disease |
EP0478319B1 (en) | 1990-09-28 | 1997-04-02 | Kabushiki Kaisha Toshiba | Gene detection method |
US5474895A (en) | 1990-11-14 | 1995-12-12 | Siska Diagnostics Inc. | Non-isotopic detection of nucleic acids using a polystyrene support-based sandwich hybridization assay and compositions useful therefor |
US5105305A (en) | 1991-01-10 | 1992-04-14 | At&T Bell Laboratories | Near-field scanning optical microscope using a fluorescent probe |
US5244813A (en) | 1991-01-25 | 1993-09-14 | Trustees Of Tufts College | Fiber optic sensor, apparatus, and methods for detecting an organic analyte in a fluid or vapor sample |
US5244636A (en) | 1991-01-25 | 1993-09-14 | Trustees Of Tufts College | Imaging fiber optic array sensors, apparatus, and methods for concurrently detecting multiple analytes of interest in a fluid sample |
US5320814A (en) | 1991-01-25 | 1994-06-14 | Trustees Of Tufts College | Fiber optic array sensors, apparatus, and methods for concurrently visualizing and chemically detecting multiple analytes of interest in a fluid sample |
US5250264A (en) | 1991-01-25 | 1993-10-05 | Trustees Of Tufts College | Method of making imaging fiber optic sensors to concurrently detect multiple analytes of interest in a fluid sample |
US5380489A (en) | 1992-02-18 | 1995-01-10 | Eastman Kodak Company | Element and method for nucleic acid amplification and detection using adhered probes |
ES2091976T3 (en) * | 1991-06-20 | 1996-11-16 | Hoffmann La Roche | PERFECTED METHODS FOR THE AMPLIFICATION OF NUCLEIC ACID. |
AU2348092A (en) | 1991-07-16 | 1993-02-23 | Transmed Biotech Incorporated | Methods and compositions for simultaneous analysis of multiple analytes |
US5639603A (en) | 1991-09-18 | 1997-06-17 | Affymax Technologies N.V. | Synthesizing and screening molecular diversity |
US5516635A (en) | 1991-10-15 | 1996-05-14 | Ekins; Roger P. | Binding assay employing labelled reagent |
WO1993009250A1 (en) * | 1991-11-01 | 1993-05-13 | Adelaide Children's Hospital | Solid phase amplification process |
US5632957A (en) | 1993-11-01 | 1997-05-27 | Nanogen | Molecular biological diagnostic systems including electrodes |
US6051380A (en) | 1993-11-01 | 2000-04-18 | Nanogen, Inc. | Methods and procedures for molecular biological analysis and diagnostics |
US5888723A (en) | 1992-02-18 | 1999-03-30 | Johnson & Johnson Clinical Diagnostics, Inc. | Method for nucleic acid amplification and detection using adhered probes |
US5869252A (en) * | 1992-03-31 | 1999-02-09 | Abbott Laboratories | Method of multiplex ligase chain reaction |
EP0565999A2 (en) | 1992-04-16 | 1993-10-20 | Siemens Aktiengesellschaft | Optical coupling device for two groups of waveguides |
KR100249110B1 (en) | 1992-05-06 | 2000-04-01 | 다니엘 엘. 캐시앙 | Nucleic acid sequence amplification method, composition and kit |
WO1993025563A1 (en) | 1992-06-17 | 1993-12-23 | City Of Hope | A method of detecting and discriminating between nucleic acid sequences |
AU4779493A (en) | 1992-07-21 | 1994-02-14 | Bunsen Rush Laboratories Inc. | Oligomer library formats and methods relating thereto |
EP0723146B1 (en) | 1992-09-14 | 2004-05-06 | Sri International | Up-converting reporters for biological and other assays using laser excitation techniques |
US5565324A (en) | 1992-10-01 | 1996-10-15 | The Trustees Of Columbia University In The City Of New York | Complex combinatorial chemical libraries encoded with tags |
US5503980A (en) * | 1992-11-06 | 1996-04-02 | Trustees Of Boston University | Positional sequencing by hybridization |
US5795714A (en) | 1992-11-06 | 1998-08-18 | Trustees Of Boston University | Method for replicating an array of nucleic acid probes |
US5541311A (en) | 1992-12-07 | 1996-07-30 | Third Wave Technologies, Inc. | Nucleic acid encoding synthesis-deficient thermostable DNA polymerase |
US5298741A (en) | 1993-01-13 | 1994-03-29 | Trustees Of Tufts College | Thin film fiber optic sensor array and apparatus for concurrent viewing and chemical sensing of a sample |
US5593840A (en) * | 1993-01-27 | 1997-01-14 | Oncor, Inc. | Amplification of nucleic acid sequences |
CA2102884A1 (en) | 1993-03-04 | 1994-09-05 | James J. Wynne | Dental procedures and apparatus using ultraviolet radiation |
JP3302458B2 (en) | 1993-08-31 | 2002-07-15 | 富士通株式会社 | Integrated optical device and manufacturing method |
WO1995014106A2 (en) | 1993-11-17 | 1995-05-26 | Id Biomedical Corporation | Cycling probe cleavage detection of nucleic acid sequences |
US5681697A (en) | 1993-12-08 | 1997-10-28 | Chiron Corporation | Solution phase nucleic acid sandwich assays having reduced background noise and kits therefor |
US5494798A (en) | 1993-12-09 | 1996-02-27 | Gerdt; David W. | Fiber optic evanscent wave sensor for immunoassay |
JPH09506611A (en) | 1993-12-15 | 1997-06-30 | コンビケム,インコーポレイテッド | Combinatorial library and its use |
US5496997A (en) | 1994-01-03 | 1996-03-05 | Pope; Edward J. A. | Sensor incorporating an optical fiber and a solid porous inorganic microsphere |
DE69531542T2 (en) * | 1994-02-07 | 2004-06-24 | Beckman Coulter, Inc., Fullerton | LIGASE / POLYMERASE-MEDIATED ANALYSIS OF GENETIC ELEMENTS OF SINGLE-NUCLEOTIDE POLYMORPHISMS AND THEIR USE IN GENETIC ANALYSIS |
USH1531H (en) * | 1994-04-18 | 1996-05-07 | Blumentals; Ilse I. | Thermophilic DNA polymerase |
US5856083A (en) | 1994-05-06 | 1999-01-05 | Pharmacopeia, Inc. | Lawn assay for compounds that affect enzyme activity or bind to target molecules |
US5807522A (en) * | 1994-06-17 | 1998-09-15 | The Board Of Trustees Of The Leland Stanford Junior University | Methods for fabricating microarrays of biological samples |
US5876924A (en) * | 1994-06-22 | 1999-03-02 | Mount Sinai School Of Medicine | Nucleic acid amplification method hybridization signal amplification method (HSAM) |
AU2990595A (en) | 1994-07-26 | 1996-02-22 | Sydney Brenner | Multidimensional conduit combinatorial library synthesis device |
US5512490A (en) | 1994-08-11 | 1996-04-30 | Trustees Of Tufts College | Optical sensor, optical sensing apparatus, and methods for detecting an analyte of interest using spectral recognition patterns |
US5681702A (en) | 1994-08-30 | 1997-10-28 | Chiron Corporation | Reduction of nonspecific hybridization by using novel base-pairing schemes |
US6280935B1 (en) * | 1994-10-13 | 2001-08-28 | Lynx Therapeutics, Inc. | Method of detecting the presence or absence of a plurality of target sequences using oligonucleotide tags |
US5604097A (en) | 1994-10-13 | 1997-02-18 | Spectragen, Inc. | Methods for sorting polynucleotides using oligonucleotide tags |
US5846719A (en) | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
US5795716A (en) * | 1994-10-21 | 1998-08-18 | Chee; Mark S. | Computer-aided visualization and analysis system for sequence evaluation |
US5585069A (en) | 1994-11-10 | 1996-12-17 | David Sarnoff Research Center, Inc. | Partitioned microelectronic and fluidic device array for clinical diagnostics and chemical synthesis |
WO1996030392A1 (en) | 1995-03-28 | 1996-10-03 | Novartis Ag | Process for the production of combinatorial compound libraries |
US5804376A (en) * | 1995-05-02 | 1998-09-08 | Incyte Pharmaceuticals, Inc. | Pancreas-derived serpin |
CA2221454A1 (en) | 1995-05-19 | 1996-11-21 | Abbott Laboratories | Wide dynamic range nucleic acid detection using an aggregate primer series |
US5830655A (en) * | 1995-05-22 | 1998-11-03 | Sri International | Oligonucleotide sizing using cleavable primers |
US5690894A (en) | 1995-05-23 | 1997-11-25 | The Regents Of The University Of California | High density array fabrication and readout method for a fiber optic biosensor |
US5656241A (en) | 1995-09-07 | 1997-08-12 | Optical Sensors Incorporated | Method for manufacturing fiber optic sensors |
EP0852004B1 (en) | 1995-10-11 | 2011-01-19 | Luminex Corporation | Multiplexed analysis of clinical specimens |
GB9521159D0 (en) | 1995-10-16 | 1995-12-20 | Brint Norman T | A weapon |
US5763175A (en) | 1995-11-17 | 1998-06-09 | Lynx Therapeutics, Inc. | Simultaneous sequencing of tagged polynucleotides |
US5780231A (en) | 1995-11-17 | 1998-07-14 | Lynx Therapeutics, Inc. | DNA extension and analysis with rolling primers |
US5854033A (en) | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
US5633972A (en) | 1995-11-29 | 1997-05-27 | Trustees Of Tufts College | Superresolution imaging fiber for subwavelength light energy generation and near-field optical microscopy |
US5814524A (en) | 1995-12-14 | 1998-09-29 | Trustees Of Tufts College | Optical sensor apparatus for far-field viewing and making optical analytical measurements at remote locations |
EP2573101B1 (en) | 1996-02-09 | 2016-04-20 | Cornell Research Foundation, Inc. | Detection of nucleic acid sequence differences using the ligase detection reaction with addressable arrays |
US6013440A (en) * | 1996-03-11 | 2000-01-11 | Affymetrix, Inc. | Nucleic acid affinity columns |
JP3764779B2 (en) * | 1996-03-30 | 2006-04-12 | 株式会社東北テクノアーチ | Analysis method using convex regions |
US5840256A (en) | 1996-04-09 | 1998-11-24 | David Sarnoff Research Center Inc. | Plate for reaction system |
ES2288760T3 (en) | 1996-04-25 | 2008-01-16 | Bioarray Solutions Ltd. | ELECTROCINETIC ASSEMBLY CONTROLLED BY LIGHT OF PARTICLES NEXT TO SURFACES. |
WO1997046704A1 (en) | 1996-06-06 | 1997-12-11 | Lynx Therapeutics, Inc. | Sequencing by ligation of encoded adaptors |
US5854684A (en) | 1996-09-26 | 1998-12-29 | Sarnoff Corporation | Massively parallel detection |
US5935793A (en) * | 1996-09-27 | 1999-08-10 | The Chinese University Of Hong Kong | Parallel polynucleotide sequencing method using tagged primers |
GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
US5900481A (en) | 1996-11-06 | 1999-05-04 | Sequenom, Inc. | Bead linkers for immobilizing nucleic acids to solid supports |
US6060245A (en) * | 1996-12-13 | 2000-05-09 | Stratagene | Methods and adaptors for generating specific nucleic acid populations |
US5976797A (en) | 1996-12-20 | 1999-11-02 | Hitachi Chemical Co., Ltd. | Method for quantifying total mRNA with poly(A)-complementary oligonucleotide-immobilized microtiter plate |
US6083763A (en) | 1996-12-31 | 2000-07-04 | Genometrix Inc. | Multiplexed molecular analysis apparatus and method |
US20020042048A1 (en) | 1997-01-16 | 2002-04-11 | Radoje Drmanac | Methods and compositions for detection or quantification of nucleic acid species |
US6023540A (en) | 1997-03-14 | 2000-02-08 | Trustees Of Tufts College | Fiber optic sensor with encoded microspheres |
US6327410B1 (en) * | 1997-03-14 | 2001-12-04 | The Trustees Of Tufts College | Target analyte sensors utilizing Microspheres |
CA2287570C (en) | 1997-05-02 | 2008-10-28 | Gen-Probe Incorporated | Two-step hybridization and capture of a polynucleotide |
US6406845B1 (en) | 1997-05-05 | 2002-06-18 | Trustees Of Tuft College | Fiber optic biosensor for selectively detecting oligonucleotide species in a mixed fluid sample |
JP4294740B2 (en) | 1997-05-23 | 2009-07-15 | ソレクサ・インコーポレイテッド | System and apparatus for serial processing of analytes |
WO1998053093A1 (en) | 1997-05-23 | 1998-11-26 | Bioarray Solutions Llc | Color-encoding and in-situ interrogation of matrix-coupled chemical compounds |
US6096496A (en) * | 1997-06-19 | 2000-08-01 | Frankel; Robert D. | Supports incorporating vertical cavity emitting lasers and tracking apparatus for use in combinatorial synthesis |
US7115884B1 (en) | 1997-10-06 | 2006-10-03 | Trustees Of Tufts College | Self-encoding fiber optic sensor |
US6124120A (en) * | 1997-10-08 | 2000-09-26 | Yale University | Multiple displacement amplification |
DE69840416D1 (en) * | 1997-10-28 | 2009-02-12 | Los Alamos Nat Security Llc | Identification of DNA polymorphisms by flow cytometry |
US6316229B1 (en) * | 1998-07-20 | 2001-11-13 | Yale University | Single molecule analysis target-mediated ligation of bipartite primers |
US5998175A (en) | 1998-07-24 | 1999-12-07 | Lumigen, Inc. | Methods of synthesizing and amplifying polynucleotides by ligation of multiple oligomers |
US6306643B1 (en) | 1998-08-24 | 2001-10-23 | Affymetrix, Inc. | Methods of using an array of pooled probes in genetic analysis |
JP3855492B2 (en) * | 1998-10-08 | 2006-12-13 | 株式会社日立製作所 | Mixed nucleic acid fragment analysis |
CA2356697C (en) * | 1999-01-06 | 2010-06-22 | Cornell Research Foundation, Inc. | Accelerating identification of single nucleotide polymorphisms and alignment of clones in genomic sequencing |
EP1196630B2 (en) | 1999-04-20 | 2018-10-17 | Illumina, Inc. | Detection of nucleic acid reactions on bead arrays |
US6355431B1 (en) | 1999-04-20 | 2002-03-12 | Illumina, Inc. | Detection of nucleic acid amplification reactions using bead arrays |
DE60042738D1 (en) | 1999-05-07 | 2009-09-24 | Life Technologies Corp | PROCESS FOR DETECTING ANALYTES USING SEMICONDUCTOR ANOCRYSTALLES |
US6372813B1 (en) * | 1999-06-25 | 2002-04-16 | Motorola | Methods and compositions for attachment of biomolecules to solid supports, hydrogels, and hydrogel arrays |
NZ517121A (en) | 1999-09-13 | 2004-05-28 | Nugen Technologies Inc | Methods and compositions for linear isothermal amplification of polynucleotide sequences |
US6221603B1 (en) * | 2000-02-04 | 2001-04-24 | Molecular Dynamics, Inc. | Rolling circle amplification assay for nucleic acid analysis |
WO2002057491A2 (en) * | 2000-10-24 | 2002-07-25 | The Board Of Trustees Of The Leland Stanford Junior University | Direct multiplex characterization of genomic dna |
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2001
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Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO1996015271A1 (en) * | 1994-11-16 | 1996-05-23 | Abbott Laboratories | Multiplex ligations-dependent amplification |
WO1997045559A1 (en) * | 1996-05-29 | 1997-12-04 | Cornell Research Foundation, Inc. | Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions |
WO1998004746A1 (en) * | 1996-07-31 | 1998-02-05 | Mount Sinai School Of Medicine Of The City University Of New York | Nucleic acid amplification method: ramification-extension amplification method (ram) |
Non-Patent Citations (3)
Title |
---|
BANER J ET AL: "Signal amplification of padlock probes by rolling circle replication", NUCLEIC ACIDS RESEARCH, OXFORD UNIVERSITY PRESS, SURREY, GB, vol. 26, no. 22, 15 November 1998 (1998-11-15), pages 5073 - 5078, XP002112357, ISSN: 0305-1048 * |
IANNONE MARIE A ET AL: "Multiplexed single nucleotide polymorphism genotyping by oligonucleotide ligation and flow cytometry.", CYTOMETRY, vol. 39, no. 2, 1 February 2000 (2000-02-01), pages 131 - 140, XP001073442, ISSN: 0196-4763 * |
LIZARDI P M ET AL: "MUTATION DETECTION AND SINGLE-MOLECULE COUNTING USING ISOTHERMAL ROLLING-CIRCLE AMPLIFICATION", NATURE GENETICS, NEW YORK, NY, US, vol. 19, no. 3, July 1998 (1998-07-01), pages 225 - 232, XP000856939, ISSN: 1061-4036 * |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9399795B2 (en) | 1998-06-24 | 2016-07-26 | Illumina, Inc. | Multiplex decoding of array sensors with microspheres |
US8906626B2 (en) | 2000-02-07 | 2014-12-09 | Illumina, Inc. | Multiplex nucleic acid reactions |
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DE60136166D1 (en) | 2008-11-27 |
US20020006617A1 (en) | 2002-01-17 |
EP1259643B1 (en) | 2008-10-15 |
US20040224353A1 (en) | 2004-11-11 |
EP1259643A2 (en) | 2002-11-27 |
US20040224352A1 (en) | 2004-11-11 |
AU2001238068A1 (en) | 2001-08-14 |
HK1047603B (en) | 2009-03-27 |
CA2399733A1 (en) | 2001-08-09 |
US20020132241A1 (en) | 2002-09-19 |
US6890741B2 (en) | 2005-05-10 |
ATE492652T1 (en) | 2011-01-15 |
EP1990428B1 (en) | 2010-12-22 |
HK1047603A1 (en) | 2003-02-28 |
DE60143723D1 (en) | 2011-02-03 |
WO2001057269A2 (en) | 2001-08-09 |
ATE411397T1 (en) | 2008-10-15 |
DK1259643T3 (en) | 2009-02-23 |
EP1990428A1 (en) | 2008-11-12 |
CA2399733C (en) | 2011-09-20 |
US20030003490A1 (en) | 2003-01-02 |
JP2003521252A (en) | 2003-07-15 |
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