WO2000040758A3 - Enhanced sequencing by hybridization using pools of probes - Google Patents
Enhanced sequencing by hybridization using pools of probes Download PDFInfo
- Publication number
- WO2000040758A3 WO2000040758A3 PCT/US2000/000458 US0000458W WO0040758A3 WO 2000040758 A3 WO2000040758 A3 WO 2000040758A3 US 0000458 W US0000458 W US 0000458W WO 0040758 A3 WO0040758 A3 WO 0040758A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- pools
- probes
- hybridization
- sequencing
- sbh
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
Abstract
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
DE60042775T DE60042775D1 (en) | 1999-01-06 | 2000-01-06 | IMPROVED SEQUENCING BY HYBRIDIZATION THROUGH THE USE OF PROBABLE MIXTURES |
AT00903186T ATE440148T1 (en) | 1999-01-06 | 2000-01-06 | IMPROVED SEQUENCING VIA HYBRIDIZATION BY USING PROBE MIXTURES |
AU24969/00A AU2496900A (en) | 1999-01-06 | 2000-01-06 | Enhanced sequencing by hybridization using pools of probes |
EP00903186A EP1144684B1 (en) | 1999-01-06 | 2000-01-06 | Enhanced sequencing by hybridization using pools of probes |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US11528499P | 1999-01-06 | 1999-01-06 | |
US60/115,284 | 1999-01-06 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2000040758A2 WO2000040758A2 (en) | 2000-07-13 |
WO2000040758A3 true WO2000040758A3 (en) | 2000-11-02 |
Family
ID=22360367
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2000/000458 WO2000040758A2 (en) | 1999-01-06 | 2000-01-06 | Enhanced sequencing by hybridization using pools of probes |
Country Status (6)
Country | Link |
---|---|
US (4) | US6864052B1 (en) |
EP (2) | EP1144684B1 (en) |
AT (1) | ATE440148T1 (en) |
AU (1) | AU2496900A (en) |
DE (1) | DE60042775D1 (en) |
WO (1) | WO2000040758A2 (en) |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9012144B2 (en) | 2003-11-12 | 2015-04-21 | Fluidigm Corporation | Short cycle methods for sequencing polynucleotides |
US9540689B2 (en) | 1998-05-01 | 2017-01-10 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
Families Citing this family (154)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6780591B2 (en) | 1998-05-01 | 2004-08-24 | Arizona Board Of Regents | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US20040106110A1 (en) * | 1998-07-30 | 2004-06-03 | Solexa, Ltd. | Preparation of polynucleotide arrays |
US20030022207A1 (en) * | 1998-10-16 | 2003-01-30 | Solexa, Ltd. | Arrayed polynucleotides and their use in genome analysis |
US20100130368A1 (en) * | 1998-07-30 | 2010-05-27 | Shankar Balasubramanian | Method and system for sequencing polynucleotides |
EP1144684B1 (en) * | 1999-01-06 | 2009-08-19 | Callida Genomics, Inc. | Enhanced sequencing by hybridization using pools of probes |
WO2000079007A1 (en) * | 1999-06-19 | 2000-12-28 | Hyseq Inc. | Improved methods of sequence assembly in sequencing by hybridization |
US7504213B2 (en) | 1999-07-09 | 2009-03-17 | Agilent Technologies, Inc. | Methods and apparatus for preparing arrays comprising features having degenerate biopolymers |
JP2004504068A (en) * | 2000-07-27 | 2004-02-12 | ザ オーストラリアン ナショナル ユニバーシティー | Combinatorial probes and their uses |
EP3034627B1 (en) | 2000-10-06 | 2019-01-30 | The Trustees of Columbia University in the City of New York | Massive parallel method for decoding dna and rna |
US9708358B2 (en) | 2000-10-06 | 2017-07-18 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
DK1370690T3 (en) * | 2001-03-16 | 2012-07-09 | Kalim Mir | Arrays and methods for using them |
US7138506B2 (en) * | 2001-05-09 | 2006-11-21 | Genetic Id, Na, Inc. | Universal microarray system |
US20040009484A1 (en) * | 2002-07-11 | 2004-01-15 | Wolber Paul K. | Methods for evaluating oligonucleotide probes of variable length |
US7498176B2 (en) * | 2002-09-27 | 2009-03-03 | Roche Nimblegen, Inc. | Microarray with hydrophobic barriers |
EP2365095A1 (en) | 2003-02-26 | 2011-09-14 | Callida Genomics, Inc. | Random array DNA analysis by hybridization |
WO2005080605A2 (en) | 2004-02-19 | 2005-09-01 | Helicos Biosciences Corporation | Methods and kits for analyzing polynucleotide sequences |
US20060226140A1 (en) * | 2005-01-25 | 2006-10-12 | Mr. Sake, Llc | Heated tray |
US20060240443A1 (en) * | 2005-04-20 | 2006-10-26 | Combimatrix Corporation | Microarray-based single nucleotide polymorphism, sequencing, and gene expression assay method |
CA2611671C (en) | 2005-06-15 | 2013-10-08 | Callida Genomics, Inc. | Single molecule arrays for genetic and chemical analysis |
US7666593B2 (en) | 2005-08-26 | 2010-02-23 | Helicos Biosciences Corporation | Single molecule sequencing of captured nucleic acids |
US7960104B2 (en) | 2005-10-07 | 2011-06-14 | Callida Genomics, Inc. | Self-assembled single molecule arrays and uses thereof |
EP2546360A1 (en) | 2005-10-07 | 2013-01-16 | Callida Genomics, Inc. | Self-assembled single molecule arrays and uses thereof |
US20070168197A1 (en) * | 2006-01-18 | 2007-07-19 | Nokia Corporation | Audio coding |
JP5180845B2 (en) | 2006-02-24 | 2013-04-10 | カリダ・ジェノミックス・インコーポレイテッド | High-throughput genomic sequencing on DNA arrays |
SG10201405158QA (en) * | 2006-02-24 | 2014-10-30 | Callida Genomics Inc | High throughput genome sequencing on dna arrays |
WO2008070352A2 (en) | 2006-10-27 | 2008-06-12 | Complete Genomics, Inc. | Efficient arrays of amplified polynucleotides |
US20090105961A1 (en) * | 2006-11-09 | 2009-04-23 | Complete Genomics, Inc. | Methods of nucleic acid identification in large-scale sequencing |
WO2008070375A2 (en) * | 2006-11-09 | 2008-06-12 | Complete Genomics, Inc. | Selection of dna adaptor orientation |
DK2099935T3 (en) * | 2006-11-30 | 2014-04-07 | Univ California | ARRAY FOR DETECTION OF MICROBES |
WO2008069973A2 (en) | 2006-12-01 | 2008-06-12 | The Trustees Of Columbia University In The City Of New York | Four-color dna sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
US11940413B2 (en) | 2007-02-05 | 2024-03-26 | IsoPlexis Corporation | Methods and devices for sequencing nucleic acids in smaller batches |
US8951731B2 (en) * | 2007-10-15 | 2015-02-10 | Complete Genomics, Inc. | Sequence analysis using decorated nucleic acids |
US20110014611A1 (en) * | 2007-10-19 | 2011-01-20 | Jingyue Ju | Design and synthesis of cleavable fluorescent nucleotides as reversible terminators for dna sequences by synthesis |
US9115163B2 (en) | 2007-10-19 | 2015-08-25 | The Trustees Of Columbia University In The City Of New York | DNA sequence with non-fluorescent nucleotide reversible terminators and cleavable label modified nucleotide terminators |
US20090263872A1 (en) * | 2008-01-23 | 2009-10-22 | Complete Genomics Inc. | Methods and compositions for preventing bias in amplification and sequencing reactions |
US8518640B2 (en) * | 2007-10-29 | 2013-08-27 | Complete Genomics, Inc. | Nucleic acid sequencing and process |
US8298768B2 (en) * | 2007-11-29 | 2012-10-30 | Complete Genomics, Inc. | Efficient shotgun sequencing methods |
US7897344B2 (en) * | 2007-11-06 | 2011-03-01 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors into library constructs |
US8415099B2 (en) * | 2007-11-05 | 2013-04-09 | Complete Genomics, Inc. | Efficient base determination in sequencing reactions |
EP2215209B1 (en) | 2007-10-30 | 2018-05-23 | Complete Genomics, Inc. | Apparatus for high throughput sequencing of nucleic acids |
WO2009061840A1 (en) * | 2007-11-05 | 2009-05-14 | Complete Genomics, Inc. | Methods and oligonucleotide designs for insertion of multiple adaptors employing selective methylation |
US9551026B2 (en) | 2007-12-03 | 2017-01-24 | Complete Genomincs, Inc. | Method for nucleic acid detection using voltage enhancement |
US8592150B2 (en) | 2007-12-05 | 2013-11-26 | Complete Genomics, Inc. | Methods and compositions for long fragment read sequencing |
EP2610351B1 (en) | 2007-12-05 | 2015-07-08 | Complete Genomics, Inc. | Efficient base determination in sequencing reactions |
WO2009092035A2 (en) * | 2008-01-17 | 2009-07-23 | Sequenom, Inc. | Methods and compositions for the analysis of biological molecules |
WO2009097368A2 (en) | 2008-01-28 | 2009-08-06 | Complete Genomics, Inc. | Methods and compositions for efficient base calling in sequencing reactions |
WO2009132028A1 (en) * | 2008-04-21 | 2009-10-29 | Complete Genomics, Inc. | Array structures for nucleic acid detection |
EP2318552B1 (en) | 2008-09-05 | 2016-11-23 | TOMA Biosciences, Inc. | Methods for stratifying and annotating cancer drug treatment options |
WO2010091023A2 (en) * | 2009-02-03 | 2010-08-12 | Complete Genomics, Inc. | Indexing a reference sequence for oligomer sequence mapping |
WO2010091021A2 (en) * | 2009-02-03 | 2010-08-12 | Complete Genomics, Inc. | Oligomer sequences mapping |
EP2394165A4 (en) * | 2009-02-03 | 2013-12-11 | Complete Genomics Inc | Oligomer sequences mapping |
DK2511843T3 (en) * | 2009-04-29 | 2017-03-27 | Complete Genomics Inc | METHOD AND SYSTEM FOR DETERMINING VARIATIONS IN A SAMPLE POLYNUCLEOTIDE SEQUENCE IN TERMS OF A REFERENCE POLYNUCLEOTIDE SEQUENCE |
AU2010242073C1 (en) | 2009-04-30 | 2015-12-24 | Good Start Genetics, Inc. | Methods and compositions for evaluating genetic markers |
WO2010127186A1 (en) | 2009-04-30 | 2010-11-04 | Prognosys Biosciences, Inc. | Nucleic acid constructs and methods of use |
US9524369B2 (en) | 2009-06-15 | 2016-12-20 | Complete Genomics, Inc. | Processing and analysis of complex nucleic acid sequence data |
EP2977455B1 (en) | 2009-06-15 | 2020-04-15 | Complete Genomics, Inc. | Method for long fragment read sequencing |
WO2011050340A1 (en) * | 2009-10-23 | 2011-04-28 | Life Technologies Corporation | Systems and methods for error correction in dna sequencing |
WO2011127099A1 (en) | 2010-04-05 | 2011-10-13 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
US8774494B2 (en) | 2010-04-30 | 2014-07-08 | Complete Genomics, Inc. | Method and system for accurate alignment and registration of array for DNA sequencing |
US11031095B2 (en) | 2010-08-06 | 2021-06-08 | Ariosa Diagnostics, Inc. | Assay systems for determination of fetal copy number variation |
US20140342940A1 (en) | 2011-01-25 | 2014-11-20 | Ariosa Diagnostics, Inc. | Detection of Target Nucleic Acids using Hybridization |
US8700338B2 (en) | 2011-01-25 | 2014-04-15 | Ariosa Diagnosis, Inc. | Risk calculation for evaluation of fetal aneuploidy |
US10167508B2 (en) | 2010-08-06 | 2019-01-01 | Ariosa Diagnostics, Inc. | Detection of genetic abnormalities |
US20130261003A1 (en) | 2010-08-06 | 2013-10-03 | Ariosa Diagnostics, In. | Ligation-based detection of genetic variants |
US10533223B2 (en) | 2010-08-06 | 2020-01-14 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
US11203786B2 (en) | 2010-08-06 | 2021-12-21 | Ariosa Diagnostics, Inc. | Detection of target nucleic acids using hybridization |
US20120034603A1 (en) | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
US20130040375A1 (en) | 2011-08-08 | 2013-02-14 | Tandem Diagnotics, Inc. | Assay systems for genetic analysis |
US9880089B2 (en) | 2010-08-31 | 2018-01-30 | Complete Genomics, Inc. | High-density devices with synchronous tracks for quad-cell based alignment correction |
US9671344B2 (en) | 2010-08-31 | 2017-06-06 | Complete Genomics, Inc. | High-density biochemical array chips with asynchronous tracks for alignment correction by moiré averaging |
KR20130113447A (en) * | 2010-09-24 | 2013-10-15 | 더 보드 어브 트러스티스 어브 더 리랜드 스탠포드 주니어 유니버시티 | Direct capture, amplification and sequencing of target dna using immobilized primers |
US8725422B2 (en) | 2010-10-13 | 2014-05-13 | Complete Genomics, Inc. | Methods for estimating genome-wide copy number variations |
US9163281B2 (en) | 2010-12-23 | 2015-10-20 | Good Start Genetics, Inc. | Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction |
US10131947B2 (en) | 2011-01-25 | 2018-11-20 | Ariosa Diagnostics, Inc. | Noninvasive detection of fetal aneuploidy in egg donor pregnancies |
US9994897B2 (en) | 2013-03-08 | 2018-06-12 | Ariosa Diagnostics, Inc. | Non-invasive fetal sex determination |
US11270781B2 (en) | 2011-01-25 | 2022-03-08 | Ariosa Diagnostics, Inc. | Statistical analysis for non-invasive sex chromosome aneuploidy determination |
WO2012103031A2 (en) | 2011-01-25 | 2012-08-02 | Ariosa Diagnostics, Inc. | Detection of genetic abnormalities |
US8756020B2 (en) | 2011-01-25 | 2014-06-17 | Ariosa Diagnostics, Inc. | Enhanced risk probabilities using biomolecule estimations |
US20120219950A1 (en) | 2011-02-28 | 2012-08-30 | Arnold Oliphant | Assay systems for detection of aneuploidy and sex determination |
US20120258871A1 (en) | 2011-04-08 | 2012-10-11 | Prognosys Biosciences, Inc. | Peptide constructs and assay systems |
GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
US9624539B2 (en) | 2011-05-23 | 2017-04-18 | The Trustees Of Columbia University In The City Of New York | DNA sequencing by synthesis using Raman and infrared spectroscopy detection |
US8712697B2 (en) | 2011-09-07 | 2014-04-29 | Ariosa Diagnostics, Inc. | Determination of copy number variations using binomial probability calculations |
CA2852665A1 (en) | 2011-10-17 | 2013-04-25 | Good Start Genetics, Inc. | Analysis methods |
WO2013059746A1 (en) | 2011-10-19 | 2013-04-25 | Nugen Technologies, Inc. | Compositions and methods for directional nucleic acid amplification and sequencing |
US10837879B2 (en) | 2011-11-02 | 2020-11-17 | Complete Genomics, Inc. | Treatment for stabilizing nucleic acid arrays |
CN105861487B (en) | 2012-01-26 | 2020-05-05 | 纽亘技术公司 | Compositions and methods for targeted nucleic acid sequence enrichment and efficient library generation |
US9803239B2 (en) | 2012-03-29 | 2017-10-31 | Complete Genomics, Inc. | Flow cells for high density array chips |
US8209130B1 (en) | 2012-04-04 | 2012-06-26 | Good Start Genetics, Inc. | Sequence assembly |
US8812422B2 (en) | 2012-04-09 | 2014-08-19 | Good Start Genetics, Inc. | Variant database |
US10227635B2 (en) | 2012-04-16 | 2019-03-12 | Molecular Loop Biosolutions, Llc | Capture reactions |
EP2844771A4 (en) | 2012-05-04 | 2015-12-02 | Complete Genomics Inc | Methods for determining absolute genome-wide copy number variations of complex tumors |
US10289800B2 (en) | 2012-05-21 | 2019-05-14 | Ariosa Diagnostics, Inc. | Processes for calculating phased fetal genomic sequences |
WO2013177214A2 (en) | 2012-05-21 | 2013-11-28 | Distributed Bio Inc | Epitope focusing by variable effective antigen surface concentration |
CN109082462B (en) | 2012-05-21 | 2022-10-28 | 斯克利普斯研究所 | Sample preparation method |
US9488823B2 (en) | 2012-06-07 | 2016-11-08 | Complete Genomics, Inc. | Techniques for scanned illumination |
US9628676B2 (en) | 2012-06-07 | 2017-04-18 | Complete Genomics, Inc. | Imaging systems with movable scan mirrors |
GB2518078B (en) | 2012-06-18 | 2015-04-29 | Nugen Technologies Inc | Compositions and methods for negative selection of non-desired nucleic acid sequences |
US20150011396A1 (en) | 2012-07-09 | 2015-01-08 | Benjamin G. Schroeder | Methods for creating directional bisulfite-converted nucleic acid libraries for next generation sequencing |
EP2875156A4 (en) | 2012-07-19 | 2016-02-24 | Ariosa Diagnostics Inc | Multiplexed sequential ligation-based detection of genetic variants |
US8778609B1 (en) | 2013-03-14 | 2014-07-15 | Good Start Genetics, Inc. | Methods for analyzing nucleic acids |
WO2014144883A1 (en) | 2013-03-15 | 2014-09-18 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
US9328382B2 (en) | 2013-03-15 | 2016-05-03 | Complete Genomics, Inc. | Multiple tagging of individual long DNA fragments |
EP2971130A4 (en) | 2013-03-15 | 2016-10-05 | Nugen Technologies Inc | Sequential sequencing |
WO2014194131A2 (en) | 2013-05-29 | 2014-12-04 | Gnubio, Inc. | Systems and methods for sequencing in emulsion based microfluidics |
US8847799B1 (en) | 2013-06-03 | 2014-09-30 | Good Start Genetics, Inc. | Methods and systems for storing sequence read data |
ES2775213T3 (en) | 2013-06-13 | 2020-07-24 | Ariosa Diagnostics Inc | Statistical analysis for the non-invasive determination of aneuploidies of the sex chromosomes |
WO2014210225A1 (en) | 2013-06-25 | 2014-12-31 | Prognosys Biosciences, Inc. | Methods and systems for determining spatial patterns of biological targets in a sample |
US10726942B2 (en) | 2013-08-23 | 2020-07-28 | Complete Genomics, Inc. | Long fragment de novo assembly using short reads |
EP3049539B1 (en) | 2013-09-25 | 2018-09-05 | Bio-Id Diagnostic Inc. | Methods for detecting nucleic acid fragments |
US10851414B2 (en) | 2013-10-18 | 2020-12-01 | Good Start Genetics, Inc. | Methods for determining carrier status |
EP3058096A1 (en) | 2013-10-18 | 2016-08-24 | Good Start Genetics, Inc. | Methods for assessing a genomic region of a subject |
JP6525473B2 (en) | 2013-11-13 | 2019-06-05 | ニューゲン テクノロジーズ, インコーポレイテッド | Compositions and methods for identifying replicate sequencing leads |
WO2015131107A1 (en) | 2014-02-28 | 2015-09-03 | Nugen Technologies, Inc. | Reduced representation bisulfite sequencing with diversity adaptors |
WO2015175530A1 (en) | 2014-05-12 | 2015-11-19 | Gore Athurva | Methods for detecting aneuploidy |
EP3191604B1 (en) | 2014-09-09 | 2021-04-14 | Igenomx International Genomics Corporation | Methods and compositions for rapid nucleic acid library preparation |
US11408024B2 (en) | 2014-09-10 | 2022-08-09 | Molecular Loop Biosciences, Inc. | Methods for selectively suppressing non-target sequences |
WO2016048829A1 (en) | 2014-09-24 | 2016-03-31 | Good Start Genetics, Inc. | Process control for increased robustness of genetic assays |
EP3271480B8 (en) | 2015-01-06 | 2022-09-28 | Molecular Loop Biosciences, Inc. | Screening for structural variants |
EP3530752B1 (en) | 2015-04-10 | 2021-03-24 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
US11099202B2 (en) | 2017-10-20 | 2021-08-24 | Tecan Genomics, Inc. | Reagent delivery system |
US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
WO2020243579A1 (en) | 2019-05-30 | 2020-12-03 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
WO2021091611A1 (en) | 2019-11-08 | 2021-05-14 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
EP4025711A2 (en) | 2019-11-08 | 2022-07-13 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
EP3891300B1 (en) | 2019-12-23 | 2023-03-29 | 10X Genomics, Inc. | Methods for spatial analysis using rna-templated ligation |
US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
WO2021216708A1 (en) | 2020-04-22 | 2021-10-28 | 10X Genomics, Inc. | Methods for spatial analysis using targeted rna depletion |
WO2021237087A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
WO2021236929A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
WO2021247568A1 (en) | 2020-06-02 | 2021-12-09 | 10X Genomics, Inc. | Spatial trancriptomics for antigen-receptors |
AU2021283174A1 (en) | 2020-06-02 | 2023-01-05 | 10X Genomics, Inc. | Nucleic acid library methods |
EP4162074B1 (en) | 2020-06-08 | 2024-04-24 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
WO2021252591A1 (en) | 2020-06-10 | 2021-12-16 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
CN116034166A (en) | 2020-06-25 | 2023-04-28 | 10X基因组学有限公司 | Spatial analysis of DNA methylation |
US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
AU2021409136A1 (en) | 2020-12-21 | 2023-06-29 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
EP4301870A1 (en) | 2021-03-18 | 2024-01-10 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
EP4196605A1 (en) | 2021-09-01 | 2023-06-21 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5002867A (en) * | 1988-04-25 | 1991-03-26 | Macevicz Stephen C | Nucleic acid sequence determination by multiple mixed oligonucleotide probes |
WO1995009248A1 (en) * | 1993-09-27 | 1995-04-06 | Arch Development Corp. | Methods and compositions for efficient nucleic acid sequencing |
WO1995011995A1 (en) * | 1993-10-26 | 1995-05-04 | Affymax Technologies N.V. | Arrays of nucleic acid probes on biological chips |
WO1996017957A1 (en) * | 1994-12-09 | 1996-06-13 | Hyseq, Inc. | Methods and apparatus for dna sequencing and dna identification |
WO1998031836A1 (en) * | 1997-01-16 | 1998-07-23 | Hyseq, Inc. | Methods and compositions for detection or quantification of nucleic acid species |
Family Cites Families (9)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5202231A (en) | 1987-04-01 | 1993-04-13 | Drmanac Radoje T | Method of sequencing of genomes by hybridization of oligonucleotide probes |
US5525464A (en) | 1987-04-01 | 1996-06-11 | Hyseq, Inc. | Method of sequencing by hybridization of oligonucleotide probes |
US5744101A (en) | 1989-06-07 | 1998-04-28 | Affymax Technologies N.V. | Photolabile nucleoside protecting groups |
WO1999009217A1 (en) | 1997-08-15 | 1999-02-25 | Hyseq, Inc. | Methods and compositions for detection or quantification of nucleic acid species |
US6355419B1 (en) * | 1998-04-27 | 2002-03-12 | Hyseq, Inc. | Preparation of pools of nucleic acids based on representation in a sample |
EP1144684B1 (en) * | 1999-01-06 | 2009-08-19 | Callida Genomics, Inc. | Enhanced sequencing by hybridization using pools of probes |
WO2000056937A2 (en) * | 1999-03-25 | 2000-09-28 | Hyseq, Inc. | Solution-based methods and materials for sequence analysis by hybridization |
US8787443B2 (en) | 2010-10-05 | 2014-07-22 | Microsoft Corporation | Content adaptive deblocking during video encoding and decoding |
US11196198B2 (en) | 2019-05-03 | 2021-12-07 | Foxconn (Kunshan) Computer Connector Co., Ltd. | Card edge connector with improved contacts |
-
2000
- 2000-01-06 EP EP00903186A patent/EP1144684B1/en not_active Expired - Lifetime
- 2000-01-06 WO PCT/US2000/000458 patent/WO2000040758A2/en active Application Filing
- 2000-01-06 AU AU24969/00A patent/AU2496900A/en not_active Abandoned
- 2000-01-06 AT AT00903186T patent/ATE440148T1/en not_active IP Right Cessation
- 2000-01-06 DE DE60042775T patent/DE60042775D1/en not_active Expired - Lifetime
- 2000-01-06 EP EP09167752A patent/EP2145963A1/en not_active Withdrawn
- 2000-01-06 US US09/479,608 patent/US6864052B1/en not_active Expired - Lifetime
-
2004
- 2004-11-12 US US10/987,549 patent/US7582431B2/en not_active Expired - Fee Related
-
2007
- 2007-10-30 US US11/929,233 patent/US8034566B2/en not_active Expired - Fee Related
-
2009
- 2009-12-22 US US12/644,860 patent/US20110039731A1/en not_active Abandoned
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5002867A (en) * | 1988-04-25 | 1991-03-26 | Macevicz Stephen C | Nucleic acid sequence determination by multiple mixed oligonucleotide probes |
WO1995009248A1 (en) * | 1993-09-27 | 1995-04-06 | Arch Development Corp. | Methods and compositions for efficient nucleic acid sequencing |
WO1995011995A1 (en) * | 1993-10-26 | 1995-05-04 | Affymax Technologies N.V. | Arrays of nucleic acid probes on biological chips |
WO1996017957A1 (en) * | 1994-12-09 | 1996-06-13 | Hyseq, Inc. | Methods and apparatus for dna sequencing and dna identification |
WO1998031836A1 (en) * | 1997-01-16 | 1998-07-23 | Hyseq, Inc. | Methods and compositions for detection or quantification of nucleic acid species |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9540689B2 (en) | 1998-05-01 | 2017-01-10 | Life Technologies Corporation | Method of determining the nucleotide sequence of oligonucleotides and DNA molecules |
US9012144B2 (en) | 2003-11-12 | 2015-04-21 | Fluidigm Corporation | Short cycle methods for sequencing polynucleotides |
Also Published As
Publication number | Publication date |
---|---|
AU2496900A (en) | 2000-07-24 |
US20110039731A1 (en) | 2011-02-17 |
ATE440148T1 (en) | 2009-09-15 |
WO2000040758A2 (en) | 2000-07-13 |
US8034566B2 (en) | 2011-10-11 |
EP1144684B1 (en) | 2009-08-19 |
US20050191656A1 (en) | 2005-09-01 |
US20090280481A1 (en) | 2009-11-12 |
US6864052B1 (en) | 2005-03-08 |
US7582431B2 (en) | 2009-09-01 |
DE60042775D1 (en) | 2009-10-01 |
EP1144684A2 (en) | 2001-10-17 |
EP2145963A1 (en) | 2010-01-20 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO2000040758A3 (en) | Enhanced sequencing by hybridization using pools of probes | |
WO2003012052A3 (en) | Specific inhibition of gene expression by small double stranded rnas | |
WO2004056981A3 (en) | Polypeptides having cellobiohydrolase ii activity and polynucleotides encoding same | |
EP2302042A3 (en) | Polypeptides having lipase activity and polynucleotides encoding same | |
MY136437A (en) | Methods and apparatus for nucleic acid sequencing by signal stretching and data intergration | |
EP2267139A3 (en) | Methods and means for obtaining modified phenotypes | |
WO2003000941A3 (en) | Polypeptides having cellobiohydrolase i activity and polynucleotides encoding same | |
MXPA04004704A (en) | Antimicrobial polypeptides from pseudoplectania nigrella. | |
WO2002095014A3 (en) | Polypeptides having cellobiase activity and polynucleotides encoding same | |
AU2003211058A8 (en) | Rna interference mediated target discovery and target validation using short interfering nucleic acid (sina) | |
WO2002077264A3 (en) | Arrayed transfection method and uses related thereto | |
GEP20125384B (en) | Representations of nucleotide sequences | |
WO2006031745A3 (en) | Methods for long-range sequence analysis of nucleic acids | |
WO2006047469A8 (en) | Polypeptides having lipase activity and polynucleotides encoding same | |
WO2001029222A3 (en) | Polypeptides having phospholipase b activity and nucleic acids encoding same | |
WO2005081632A8 (en) | Enzymes, cells and methods for site specific recombination at asymmetric sites | |
EP1134294A3 (en) | Method for producing immobilized nucleic acid strand | |
IL173314A0 (en) | Determining the sequence of a polynucleotide | |
WO2002026756A3 (en) | Arrays of partially nonhybridizing oligonucleotides and preparation thereof using focused acoustic energy | |
WO2005049851A3 (en) | Methods, articles, and compositions for identifying oligonucleotides | |
WO2006005032A3 (en) | Polypeptides having alpha-glucosidase activity and polynucleotides encoding same | |
AU2003291610A1 (en) | Method to generate or determine nucleic acid tags corresponding to the terminal ends of dna molecules using sequences analysis of gene expression (terminal sage) | |
WO2000022171A3 (en) | Systems and methods for sequencing by hybridization | |
WO2003012042A3 (en) | Ratio-based oligonucleotide probe selection | |
WO2007073523A8 (en) | MITIGATION OF Cot-1 DNA DISTORTION IN NUCLEIC ACID HYBRIDIZATION |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AK | Designated states |
Kind code of ref document: A2 Designated state(s): AE AL AM AT AU AZ BA BB BG BR BY CA CH CN CR CU CZ DE DK EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MD MG MK MN MW MX NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG UZ VN YU ZA ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A2 Designated state(s): GH GM KE LS MW SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG |
|
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
DFPE | Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101) | ||
AK | Designated states |
Kind code of ref document: A3 Designated state(s): AE AL AM AT AU AZ BA BB BG BR BY CA CH CN CR CU CZ DE DK EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MD MG MK MN MW MX NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG UZ VN YU ZA ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A3 Designated state(s): GH GM KE LS MW SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2000903186 Country of ref document: EP |
|
WWP | Wipo information: published in national office |
Ref document number: 2000903186 Country of ref document: EP |
|
REG | Reference to national code |
Ref country code: DE Ref legal event code: 8642 |