WO1998049302A1 - Secreted proteins and polynucleotides encoding them - Google Patents

Secreted proteins and polynucleotides encoding them Download PDF

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Publication number
WO1998049302A1
WO1998049302A1 PCT/US1998/008336 US9808336W WO9849302A1 WO 1998049302 A1 WO1998049302 A1 WO 1998049302A1 US 9808336 W US9808336 W US 9808336W WO 9849302 A1 WO9849302 A1 WO 9849302A1
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WIPO (PCT)
Prior art keywords
amino acid
polynucleotide
seq
protein
sequence
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PCT/US1998/008336
Other languages
French (fr)
Inventor
Kenneth Jacobs
John M. Mccoy
Edward R. Lavallie
Lisa A. Racie
David Merberg
Maurice Treacy
Vikki Spaulding
Michael J. Agostino
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Genetics Institute, Inc.
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Publication date
Application filed by Genetics Institute, Inc. filed Critical Genetics Institute, Inc.
Priority to EP98918724A priority Critical patent/EP0977853A1/en
Priority to CA002288343A priority patent/CA2288343A1/en
Priority to JP54719298A priority patent/JP2001527403A/en
Priority to AU71598/98A priority patent/AU7159898A/en
Publication of WO1998049302A1 publication Critical patent/WO1998049302A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention provides novel polynucleotides and proteins encoded by such polynucleotides, along with therapeutic, diagnostic and research utilities for these polynucleotides and proteins.
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID
  • polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
  • such polynucleotide comprises the nucleotide sequence of SEQ ID NO:l from nucleotide 99 to nucleotide 902; the nucleotide sequence of SEQ ID NO:l from nucleotide 162 to nucleotide 902; the nucleotide sequence of SEQ ID NO:l from nucleotide 87 to nucleotide 219; the nucleotide sequence of the full-length protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415.
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415.
  • Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO: 1
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO:2;
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID
  • polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
  • polynucleotide comprises the nucleotide sequence of SEQ ID NO: 1
  • polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169.
  • Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169.
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO:4;
  • protein comprises the amino acid sequence of SEQ ID NO:4 or the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169.
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • such polynucleotide comprises the nucleotide sequence of SEQ ID NO:5 from nucleotide 152 to nucleotide 2182; the nucleotide sequence of SEQ ID NO:5 from nucleotide 2 to nucleotide 931; the nucleotide sequence of the full-length protein coding sequence of clone du410_5 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone du410_5 deposited under accession number ATCC 98415.
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:6 from amino acid 1 to amino acid 260.
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:8 having biological activity, the fragment comprising the amino acid sequence from amino acid 88 to amino acid 97 of SEQ ID NO:8;
  • such polynucleotide comprises the nucleotide sequence of SEQ ID NO:7 from nucleotide 51 to nucleotide 611; the nucleotide sequence of SEQ ID NO:7 from nucleotide 1 to nucleotide 525; the nucleotide sequence of the full-length protein coding sequence of clone eh80_l deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone eh80_l deposited under accession number ATCC 98415.
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158.
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
  • protein comprises the amino acid sequence of SEQ ID NO:8 or the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158.
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
  • polynucleotide comprises the nucleotide sequence of SEQ ID NO: 1
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:10 from amino acid 1 to amino acid
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • such polynucleotide comprises the nucleotide sequence of SEQ ID NO:ll from nucleotide 91 to nucleotide 2838; the nucleotide sequence of SEQ ID NO:ll from nucleotide 2209 to nucleotide 2838; the nucleotide sequence of SEQ ID NO: 11 from nucleotide 839 to nucleotide 1197; the nucleotide sequence of the full-length protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415.
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369.
  • Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369.
  • Other embodiments provide the gene corresponding to the cDNA sequence of SEQ
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO: 12;
  • protein comprises the amino acid sequence of SEQ ID NO:12 or the amino acid sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369.
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fm60_l deposited under accession number ATCC 98415;
  • polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
  • polynucleotide comprises the nucleotide sequence of SEQ ID NO: 1
  • polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415.
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
  • the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
  • such polynucleotide comprises the nucleotide sequence of SEQ ID NO:15 from nucleotide 16 to nucleotide 309; the nucleotide sequence of SEQ ID NO:15 from nucleotide 127 to nucleotide 309; the nucleotide sequence of the full-length protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415.
  • the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415.
  • the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58.
  • Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:15.
  • the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
  • protein comprises the amino acid sequence of SEQ ID NO: 16 or the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58.
  • the polynucleotide is operably linked to an expression control sequence.
  • the invention also provides a host cell, including bacterial, yeast, insect and mammalian cells, transformed with such polynucleotide compositions. Also provided by the present invention are organisms that have enhanced, reduced, or modified expression of the gene(s) corresponding to the polynucleotide sequences disclosed herein.
  • Processes are also provided for producing a protein, which comprise:
  • the protein produced according to such methods is also provided by the present invention.
  • Preferred embodiments include those in which the protein produced by such process is a mature form of the protein.
  • Protein compositions of the present invention may further comprise a pharmaceutically acceptable carrier.
  • Compositions comprising an antibody which specifically reacts with such protein are also provided by the present invention.
  • Methods are also provided for preventing, treating or ameliorating a medical condition which comprises administering to a mammalian subject a therapeutically effective amount of a composition comprising a protein of the present invention and a pharmaceutically acceptable carrier.
  • Figures 1A and IB are schematic representations of the pED6 and pNOTs vectors, respectively, used for deposit of clones disclosed herein.
  • nucleotide and amino acid sequences are reported below for each clone and protein disclosed in the present application.
  • the nucleotide sequence of each clone can readily be determined by sequencing of the deposited clone in accordance with known methods. The predicted amino acid sequence (both full-length and mature forms) can then be determined from such nucleotide sequence.
  • the amino acid sequence of the protein encoded by a particular clone can also be determined by expression of the clone in a suitable host cell, collecting the protein and determining its sequence. For each disclosed protein applicants have identified what they have determined to be the reading frame best identifiable with sequence information available at the time of filing.
  • a "secreted” protein is one which, when expressed in a suitable host cell, is transported across or through a membrane, including transport as a result of signal sequences in its amino acid sequence.
  • "Secreted” proteins include without limitation proteins secreted wholly (e.g., soluble proteins) or partially (e.g. , receptors) from the cell in which they are expressed.
  • “Secreted” proteins also include without limitation proteins which are transported across the membrane of the endoplasmic reticulum.
  • a polynucleotide of the present invention has been identified as clone "ci25_4".
  • ci25_4 was isolated from a human adult brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • ci25_4 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "ci25_4 protein").
  • the nucleotide sequence of ci25_4 as presently determined is reported in SEQ ID NO:l.
  • amino acids 9 to 21 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 22, or are a transmembrane domain.
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone ci25_4 should be approximately 1700 bp.
  • ci25_4 demonstrated at least some similarity with sequences identified as AA243050 (zr24h03.rl Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone 664373 5'), AA316800 (EST188485 HCC cell line (matastasis to liver in mouse) II Homo sapiens cDNA 5' end), AA340783 (EST46083 Fetal kidney II Homo sapiens cDNA 5' end), Q05686 (Islets of Langerhans cell clone ICA12.3 (ATCC 40703)), R12690 (yf40e07.sl Homo sapiens cDNA clone 129348 3'), R16432 (yf40e07.rl Homo sapiens cDNA clone),
  • ci25_4 proteins and each similar protein or peptide may share at least some activity.
  • the TopPredll computer program predicts five additional potential transmembrane domains within the ci25_4 protein sequence, centered around amino acids 81, 134, 159, 182, and 241 of SEQ ID NO:2, respectively.
  • da228_6 A polynucleotide of the present invention has been identified as clone "da228_6”.
  • da228_6 was isolated from a human adult placenta cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • da228_6 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "da228_6 protein").
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone da228_6 should be approximately 1500 bp.
  • the nucleotide sequence disclosed herein for da228_6 was searched against the
  • da228_6 demonstrated at least some similarity with sequences identified as W57906 (zdl7fll.rl Soares fetal heart NbHH19W Homo sapiens cDNA clone 340941 5') and W57907 (zdl7fll.sl Soares fetal heart NbHH19W Homo sapiens cDNA clone 340941 3M Based upon sequence similarity, da228_6 proteins and each similar protein or peptide may share at least some activity.
  • du410_5 was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • du410_5 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "du410_5 protein").
  • du410_5 The nucleotide sequence of du410_5 as presently determined is reported in SEQ ID NO:5. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the du410_5 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:6.
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone du410_5 should be approximately 2400 bp.
  • du410_5 demonstrated at least some similarity with sequences identified as N44315 (EST51pl9 WATMl Homo sapiens cDNA clone 51pl9) and N66980
  • du410_5 (yz58d04.sl Homo sapiens cDNA clone 287239 3').
  • the predicted amino acid sequence disclosed herein for du410_5 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol.
  • the predicted du410_5 protein demonstrated at least some similarity to sequences identified as U67604 (PI 15 protein [Methanococcus jannaschii]). Based upon sequence similarity, du410_5 proteins and each similar protein or peptide may share at least some activity.
  • eh80 1 A polynucleotide of the present invention has been identified as clone "eh80_l".
  • eh80_l was isolated from a human adult blood (peripheral blood mononuclear cells treated with granulocyte-colony stimulating factor in vivo) cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • eh80_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "eh80_l protein").
  • nucleotide sequence of eh80_l as presently determined is reported in SEQ ID NO:7. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the eh80_l protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:8. Another potential eh80_l reading frame and predicted amino acid sequence is encoded by basepairs 41 to 1659 of SEQ ID NO:7 and is reported in SEQ ID NO:25. A frameshift in the nucleotide sequence of SEQ ID NO:5 between about nucleotide 41 to about nucleotide 614 could join together portions of the overlapping reading frames of SEQ ID NO:8 and SEQ ID NO:25.
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone eh80_l should be approximately 2000 bp.
  • eh80_l demonstrated at least some similarity with sequences identified as AA012957 (ze27b03.rl Soares retina N2b4HR Homo sapiens cDNA clone 360173 5'), AA019878 (ze63b03.sl Soares retina N2b4HR Homo sapiens cDNA clone 363629 3'), AA505456 (nh84c07.sl NCI_CGAP_Brl.l Homo sapiens cDNA clone IMAGE 965196), Q60246 (Human brain Expressed Sequence Tag EST02242), R16603 (yf43c04.rl Homo sapiens cDNA clone 1296065'), and T85469 (yd82f05.rl Homo sapiens
  • the predicted amino acid sequence disclosed herein for eh80_l was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol.
  • the predicted eh80_l protein demonstrated at least some similarity to sequences identified as U40747 (FBP 11 [Mus musculus]). Based upon sequence similarity, eh80_l proteins and each similar protein or peptide may share at least some activity.
  • the TopPredll computer program predicts two potential transmembrane domains within the amino acid sequence of SEQ ID NO:8, one centered around amino acid 107 and another around amino acid 131.
  • a polynucleotide of the present invention has been identified as clone "er369_l".
  • er369_l was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • er369_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "er369_l protein").
  • nucleotide sequence of er369_l as presently determined is reported in SEQ ID NO:9. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the er369_l protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:10. Amino acids 17 to 29 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 30, or are a transmembrane domain.
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone er369_l should be approximately 1500 bp.
  • er369_l The nucleotide sequence disclosed herein for er369_l was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. er369_l demonstrated at least some similarity with sequences identified as H12227 (yml2gl0.rl Homo sapiens cDNA clone 47729 5'), H70978 (yr73g06.rl Homo sapiens cDNA clone 210970 5'), M79179 (EST01327 Homo sapiens cDNA clone HHCPO ⁇ l), Q61324 (Human brain Expressed Sequence Tag EST01327), and R53554 (yg84e04.sl Homo sapiens cDNA clone 398543' similar to contains Alu repetitive element). Based upon sequence similarity, er369_l proteins and each similar protein or peptide may share at least some activity. The nucleotide sequence of er
  • fhl23_5 A polynucleotide of the present invention has been identified as clone "fhl23_5".
  • fhl23_5 was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • fhl23_5 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fhl23_5 protein").
  • nucleotide sequence of fhl23_5 as presently determined is reported in SEQ ID NO:ll. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the fhl23_5 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:12. Amino acids 694 to 706 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 707, or are a transmembrane domain.
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone fhl23_5 should be approximately 2800 bp.
  • fhl23_5 demonstrated at least some similarity with sequences identified as AA815253 (ai64d02.sl Soares testis NHT Homo sapiens cDNA clone 1375587 3'), AA855689 (vw71h04.rl Stratagene mouse heart (#937316) Mus musculus cDNA clone 12604395'), and W80785 (zd83d07.sl Soares fetal heart NbHH19W Homo sapiens cDNA clone 347245 3).
  • the predicted amino acid sequence disclosed herein for fhl23_5 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol.
  • the predicted fhl23_5 protein demonstrated at least some similarity to sequences identified as D80005 (KIAA0183 [Homo sapiens]). Based upon sequence similarity, fhl23_5 proteins and each similar protein or peptide may share at least some activity.
  • the TopPredll computer program predicts five additional possible transmembrane domains within the fhl23_5 protein sequence.
  • fm60_l A polynucleotide of the present invention has been identified as clone "fm60_l".
  • fm60_l was isolated from a human adult brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • fm60_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fm60_l protein").
  • the nucleotide sequence of fm60_l as presently determined is reported in SEQ ID
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone fm60_l should be approximately 2200 bp.
  • fm60_l demonstrated at least some similarity with sequences identified as AA155574 (zo70a01.sl Stratagene pancreas (#937208) Homo sapiens cDNA clone 592200 3'), AF015147 (Homo sapiens clone HS19.1 Alu-Ya5 sequence), N86095 (J6377F Fetal heart, Lambda ZAP Express Homo sapiens cDNA clone J63775' similar to REPETITIVE ELEMENT ALU), U14567 (***ALU WARNING Human Alu-J subfamily consensus sequence), and Z82199 (Human DNA sequence from clone J316D5).
  • fm60_l proteins and each similar protein or peptide may share at least some activity.
  • the TopPredll computer program predicts a potential transmembrane domain within the fm60_l protein sequence centered around amino acid 50 of SEQ ID NO:14.
  • the nucleotide sequence of fm60_l indicates that it may contain one or more of the following repetitive elements: Alu, LI.
  • fr473_2 A polynucleotide of the present invention has been identified as clone "fr473_2”.
  • fr473_2 was isolated from a human adult placenta cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein.
  • fr473_2 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fr473_2 protein").
  • the EcoRI/NotI restriction fragment obtainable from the deposit containing clone fr473_2 should be approximately 605 bp.
  • fr473_2 demonstrated at least some similarity with sequences identified as AA479559 (zu42a02.rl Soares ovary tumor NbHOT Homo sapiens cDNA clone 740618 5' similar to WP:F49C12.12 CE03372), H46855 (yol8g04.rl Homo sapiens cDNA clone 178326 5'), T24372 (Human gene signature HUMGS06404), W31692 (zb93d01.rl Soares parathyroid tumor NbHPA Homo sapiens cDNA clone 320353 5'), and Z32877 (H.
  • fr473_2 sapiens partial cDNA sequence; clone HEA41P; single read).
  • the predicted amino acid sequence disclosed herein for fr473_2 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol.
  • the predicted fr473_2 protein demonstrated at least some similarity to sequences identified as Z68227 (F49C12.12 [Caenorhabditis elegans]). Based upon sequence similarity, fr473_2 proteins and each similar protein or peptide may share at least some activity.
  • Clones ci25_4, da228_6, du410_5, eh80_l, er369_l, fhl23_5, fm60_l, and fr473_2 were deposited on April 25, 1997 with the American Type Culture Collection (10801
  • Each clone has been transfected into separate bacterial cells (E. coli) in this composite deposit. Each clone can be removed from the vector in which it was deposited by performing an EcoRI/NotI digestion (5' site, EcoRI; 3' site, NotI) to produce the appropriate fragment for such clone. Each clone was deposited in either the pED6 or pNOTs vector depicted in Figures 1A and IB, respectively.
  • the pED6dpc2 vector (“pED6" was derived from pED ⁇ dpcl by insertion of a new polylinker to facilitate cDNA cloning (Kaufman et al, 1991, Nucleic Acids Res.
  • the pNOTs vector was derived from pMT2 (Kaufman et al, 1989, Mol. Cell Biol. 9: 946-958) by deletion of the DHFR sequences, insertion of a new polylinker, and insertion of the M13 origin of replication in the Clal site.
  • the deposited clone can become "flipped" (i.e., in the reverse orientation) in the deposited isolate.
  • the cDNA insert can still be isolated by digestion with EcoRI and Notl. However, NotI will then produce the 5' site and EcoRI will produce the 3' site for placement of the cDNA in proper orientation for expression in a suitable vector.
  • the cDNA may also be expressed from the vectors in which they were deposited.
  • Bacterial cells containing a particular clone can be obtained from the composite deposit as follows:
  • oligonucleotide probe or probes should be designed to the sequence that is known for that particular clone. This sequence can be derived from the sequences provided herein, or from a combination of those sequences. The sequence of an oligonucleotide probe that was used to isolate or to sequence each full-length clone is identified below, and should be most reliable in isolating the clone of interest.
  • the design of the oligonucleotide probe should preferably follow these parameters: (a) It should be designed to an area of the sequence which has the fewest ambiguous bases ("N's"), if any; (b) It should be designed to have a T m of approx. 80 ° C (assuming 2° for each A or T and 4 degrees for each G or C).
  • the oligonucleotide should preferably be labeled with g- 32 P ATP (specific activity 6000 Ci/mmole) and T4 polynucleotide kinase using commonly employed techniques for labeling oligonucleotides. Other labeling techniques can also be used. Unincorporated label should preferably be removed by gel filtration chromatography or other established methods. The amount of radioactivity incorporated into the probe should be quantitated by measurement in a scintillation counter. Preferably, specific activity of the resulting probe should be approximately 4e+6 dpm/pmole.
  • the bacterial culture containing the pool of full-length clones should preferably be thawed and 100 ⁇ l of the stock used to inoculate a sterile culture flask containing 25 ml of sterile L-broth containing ampicillin at 100 ⁇ g/ml.
  • the culture should preferably be grown to saturation at 37°C, and the saturated culture should preferably be diluted in fresh L-broth.
  • Aliquots of these dilutions should preferably be plated to determine the dilution and volume which will yield approximately 5000 distinct and well-separated colonies on solid bacteriological media containing L-broth containing ampicillin at 100 ⁇ g/ml and agar at 1.5% in a 150 mm petri dish when grown overnight at 37°C. Other known methods of obtaining distinct, well-separated colonies can also be employed. Standard colony hybridization procedures should then be used to transfer the colonies to nitrocellulose filters and lyse, denature and bake them.
  • the filter is then preferably incubated at 65°C for 1 hour with gentle agitation in 6X SSC (20X stock is 175.3 g NaCl/liter, 88.2 g Na citrate /liter, adjusted to pH 7.0 with NaOH) containing 0.5% SDS, 100 ⁇ g/ml of yeast RNA, and 10 mM EDTA (approximately 10 mL per 150 mm filter).
  • 6X SSC 20X stock is 175.3 g NaCl/liter, 88.2 g Na citrate /liter, adjusted to pH 7.0 with NaOH) containing 0.5% SDS, 100 ⁇ g/ml of yeast RNA, and 10 mM EDTA (approximately 10 mL per 150 mm filter).
  • the probe is then added to the hybridization mix at a concentration greater than or equal to le+6 dpm/mL.
  • the filter is then preferably incubated at 65°C with gentle agitation overnight.
  • the filter is then preferably washed in 500 mL of 2X SSC/0.5% SDS at room temperature without agitation, preferably followed by 500 mL of 2X SSC/0.1% SDS at room temperature with gentle shaking for 15 minutes. A third wash with 0.1X SSC/0.5% SDS at 65°C for 30 minutes to 1 hour is optional.
  • the filter is then preferably dried and subjected to autoradiography for sufficient time to visualize the positives on the X-ray film. Other known hybridization methods can also be employed. The positive colonies are picked, grown in culture, and plasmid DNA isolated using standard procedures. The clones can then be verified by restriction analysis, hybridization analysis, or DNA sequencing.
  • Fragments of the proteins of the present invention which are capable of exhibiting biological activity are also encompassed by the present invention.
  • Fragments of the protein may be in linear form or they may be cyclized using known methods, for example, as described in H.U. Saragovi, et al, Bio /Technology 10, 773-778 (1992) and in R.S. McDowell, et al, J. Amer. Chem. Soc. 114, 9245-9253 (1992), both of which are incorporated herein by reference.
  • Such fragments may be fused to carrier molecules such as immunoglobulins for many purposes, including increasing the valency of protein binding sites.
  • fragments of the protein may be fused through "linker" sequences to the Fc portion of an immunoglobulin.
  • a bivalent form of the protein such a fusion could be to the Fc portion of an IgG molecule.
  • Other immunoglobulin isotypes may also be used to generate such fusions.
  • a protein - IgM fusion would generate a decavalent form of the protein of the invention.
  • the present invention also provides both full-length and mature forms of the disclosed proteins. The full-length form of the such proteins is identified in the sequence listing by translation of the nucleotide sequence of each disclosed clone.
  • the mature form(s) of such protein may be obtained by expression of the disclosed full-length polynucleotide (preferably those deposited with ATCC) in a suitable mammalian cell or other host cell.
  • the sequence(s) of the mature form(s) of the protein may also be determinable from the amino acid sequence of the full-length form.
  • the present invention also provides genes corresponding to the polynucleotide sequences disclosed herein.
  • “Corresponding genes” are the regions of the genome that are transcribed to produce the mRNAs from which cDNA polynucleotide sequences are derived and may include contiguous regions of the genome necessary for the regulated expression of such genes. Corresponding genes may therefore include but are not limited to coding sequences, 5' and 3' untranslated regions, alternatively spliced exons, introns, promoters, enhancers, and silencer or suppressor elements. The corresponding genes can be isolated in accordance with known methods using the sequence information disclosed herein.
  • Such methods include the preparation of probes or primers from the disclosed sequence information for identification and /or amplification of genes in appropriate genomic libraries or other sources of genomic materials.
  • An "isolated gene” is a gene that has been separated from the adjacent coding sequences, if any, present in the genome of the organism from which the gene was isolated.
  • Organisms that have enhanced, reduced, or modified expression of the gene(s) corresponding to the polynucleotide sequences disclosed herein are provided.
  • the desired change in gene expression can be achieved through the use of antisense polynucleotides or ribozymes that bind and/or cleave the mRNA transcribed from the gene (Albert and Morris, 1994, Trends Pharmacol. Sci. 15(7): 250-254; Lavarosky et al, 1997, Biochem. Mol. Med. 62(1): 11-22; and Hampel, 1998, Prog. Nucleic Acid Res. Mol. Biol 58: 1- 39; all of which are incorporated by reference herein).
  • Transgenic animals that have multiple copies of the gene(s) corresponding to the polynucleotide sequences disclosed herein, preferably produced by transformation of cells with genetic constructs that are stably maintained within the transformed cells and their progeny, are provided.
  • organisms are provided in which the gene(s) corresponding to the polynucleotide sequences disclosed herein have been partially or completely inactivated, through insertion of extraneous sequences into the corresponding gene(s) or through deletion of all or part of the corresponding gene(s).
  • Partial or complete gene inactivation can be accomplished through insertion, preferably followed by imprecise excision, of transposable elements (Plasterk, 1992, Bioessays 14(9): 629-633; Zwaal et al, 1993, Proc. Natl Acad. Sci. USA 90(16): 7431-7435; Clark et al, 1994, Proc. Natl. Acad. Sci. USA 91(2): 719-722; all of which are incorporated by reference herein), or through homologous recombination, preferably detected by positive/negative genetic selection strategies (Mansour et al, 1988, Nature 336: 348-352; U.S. Patent Nos.
  • intracellular and transmembrane domains of the protein are deleted such that the protein is fully secreted from the cell in which it is expressed.
  • the intracellular and transmembrane domains of proteins of the invention can be identified in accordance with known techniques for determination of such domains from sequence information.
  • Proteins and protein fragments of the present invention include proteins with amino acid sequence lengths that are at least 25%(more preferably at least 50%, and most preferably at least 75%) of the length of a disclosed protein and have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% or 95% identity) with that disclosed protein, where sequence identity is determined by comparing the amino acid sequences of the proteins when aligned so as to maximize overlap and identity while minimizing sequence gaps.
  • proteins and protein fragments that contain a segment preferably comprising 8 or more (more preferably 20 or more, most preferably 30 or more) contiguous amino acids that shares at least 75% sequence identity (more preferably, at least 85% identity; most preferably at least 95% identity) with any such segment of any of the disclosed proteins.
  • Species homologues of the disclosed polynucleotides and proteins are also provided by the present invention.
  • a "species homologue” is a protein or polynucleotide with a different species of origin from that of a given protein or polynucleotide, but with significant sequence similarity to the given protein or polynucleotide.
  • polynucleotide species homologues have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% identity) with the given polynucleotide, and protein species homologues have at least 30% sequence identity (more preferably, at least 45% identity; most preferably at least 60% identity) with the given protein, where sequence identity is determined by comparing the nucleotide sequences of the polynucleotides or the amino acid sequences of the proteins when aligned so as to maximize overlap and identity while minimizing sequence gaps.
  • Species homologues may be isolated and identified by making suitable probes or primers from the sequences provided herein and screening a suitable nucleic acid source from the desired species.
  • species homologues are those isolated from mammalian species. Most preferably, species homologues are those isolated from certain mammalian species such as, for example, Pan troglodytes, Gorilla gorilla, Pongo pygmaeus, Hylobates co color, Macaca mulatta, Papio papio, Papio hamadryas, Cercopithecus aethiops, Cebus capucinus, Aotus trivirgatus, Sanguinus oedipus, Microcebus murinus, Mus musculns, Rattus norvegicus, Cricetulus griseus, Felts catus, Mustela vison, Canis fam ⁇ liaris, Oryctolagiis cuniculus, Bos taurus, Ovis aries, Sus scrofa, and Equus caballus, for which genetic maps have been created allowing the identification of syntenic relationships between the genomic organization of genes in one species and the genomic organization
  • allelic variants of the disclosed polynucleotides or proteins that is, naturally-occurring alternative forms of the isolated polynucleotides which also encode proteins which are identical or have significantly similar sequences to those encoded by the disclosed polynucleotides.
  • allelic variants have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% identity) with the given polynucleotide, where sequence identity is determined by comparing the nucleotide sequences of the polynucleotides when aligned so as to maximize overlap and identity while minimizing sequence gaps.
  • Allelic variants may be isolated and identified by making suitable probes or primers from the sequences provided herein and screening a suitable nucleic acid source from individuals of the appropriate species.
  • the invention also includes polynucleotides with sequences complementary to those of the polynucleotides disclosed herein.
  • the present invention also includes polynucleotides that hybridize under reduced stringency conditions, more preferably stringent conditions, and most preferably highly stringent conditions, to polynucleotides described herein.
  • stringency conditions are shown in the table below: highly stringent conditions are those that are at least as stringent as, for example, conditions A-F; stringent conditions are at least as stringent as, for example, conditions G-L; and reduced stringency conditions are at least as stringent as, for example, conditions M-R.
  • the hybrid length is that anticipated for the hybridized reg ⁇ on(s) of the hybridizing polynucleotides When hybridizing a polynucleotide to a target polynucleotide of unknown sequence, the hybrid length is assumed to be that of the hybridizing polynucleotide When polynucleotides of known sequence are hybridized, the hybrid length can be determined by aligning the sequences of the polynucleotides and identifying the region or regions of optimal sequence complementarity
  • SSPE (lxSSPE is 0 15M NaCl, lOmM NaH 2 P0 4 , and 1 25mM EDTA, pH 74) can be substituted for SSC (lxSSC is 0 15M NaCl and 15mM sodium citrate) in the hybridization and wash buffers, washes are performed for 15 minutes after hybridization is complete
  • T m melting temperature
  • each such hybridizing polynucleotide has a length that is at least 25%(more preferably at least 50%, and most preferably at least 75%) of the length of the polynucleotide of the present invention to which it hybridizes, and has at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% or 95% identity) with the polynucleotide of the present invention to which it hybridizes, where sequence identity is determined by comparing the sequences of the hybridizing polynucleotides when aligned so as to maximize overlap and identity while minimizing sequence gaps.
  • the isolated polynucleotide of the invention may be operably linked to an expression control sequence such as the pMT2 or pED expression vectors disclosed in Kaufman et al, Nucleic Acids Res. 19, 4485-4490 (1991), in order to produce the protein recombinantly.
  • an expression control sequence such as the pMT2 or pED expression vectors disclosed in Kaufman et al, Nucleic Acids Res. 19, 4485-4490 (1991)
  • Many suitable expression control sequences are known in the art. General methods of expressing recombinant proteins are also known and are exemplified in R. Kaufman, Methods in Enzymology 185, 537-566 (1990).
  • operably linked means that the isolated polynucleotide of the invention and an expression control sequence are situated within a vector or cell in such a way that the protein is expressed by a host cell which has been transformed (transfected) with the ligated polynucleotide/expression control sequence.
  • Mammalian host cells include, for example, monkey COS cells, Chinese Hamster
  • Ovary (CHO) cells human kidney 293 cells, human epidermal A431 cells, human Colo205 cells, 3T3 cells, CV-1 cells, other transformed primate cell lines, normal diploid cells, cell strains derived from in vitro culture of primary tissue, primary explants, HeLa cells, mouse L cells, BHK, HL-60, U937, HaK or Jurkat cells.
  • yeast in lower eukaryotes such as yeast or in prokaryotes such as bacteria.
  • yeast strains include Saccharomyces cerevisiae, Schizosaccharomyces pombe, Kluyveromyces strains, Candida, or any yeast strain capable of expressing heterologous proteins.
  • bacterial strains include Escherichia coli, Bacillus subtilis, Salmonella typhimurium, or any bacterial strain capable of expressing heterologous proteins. If the protein is made in yeast or bacteria, it may be necessary to modify the protein produced therein, for example by phosphorylation or glycosylation of the appropriate sites, in order to obtain the functional protein. Such covalent attachments may be accomplished using known chemical or enzymatic methods.
  • the protein may also be produced by operably linking the isolated polynucleotide of the invention to suitable control sequences in one or more insect expression vectors, and employing an insect expression system.
  • suitable control sequences in one or more insect expression vectors, and employing an insect expression system.
  • Materials and methods for baculovirus/insect cell expression systems are commercially available in kit form from, e.g., Invitrogen, San Diego, California, U.S.A. (the MaxBac® kit), and such methods are well known in the art, as described in Summers and Smith, Texas Agricultural Experiment Station Bulletin No. 1555 (1987), incorporated herein by reference.
  • an insect cell capable of expressing a polynucleotide of the present invention is "transformed.”
  • the protein of the invention may be prepared by culturing transformed host cells under culture conditions suitable to express the recombinant protein.
  • the resulting expressed protein may then be purified from such culture (i.e., from culture medium or cell extracts) using known purification processes, such as gel filtration and ion exchange chromatography.
  • the purification of the protein may also include an affinity column containing agents which will bind to the protein; one or more column steps over such affinity resins as concanavalin A-agarose, heparin-toyopearl® or Cibacrom blue 3GA Sepharose®; one or more steps involving hydrophobic interaction chromatography using such resins as phenyl ether, butyl ether, or propyl ether; or immunoaffinity chromatography.
  • the protein of the invention may also be expressed in a form which will facilitate purification. For example, it may be expressed as a fusion protein, such as those of maltose binding protein (MBP), glutathione-S-transferase (GST) or thioredoxin (TRX).
  • Kits for expression and purification of such fusion proteins are commercially available from New England BioLab (Beverly, MA), Pharmacia (Piscataway, NJ) and InVitrogen, respectively.
  • the protein can also be tagged with an epitope and subsequently purified by using a specific antibody directed to such epitope.
  • One such epitope (“Flag") is commercially available from Kodak (New Haven, CT).
  • RP- HPLC reverse-phase high performance liquid chromatography
  • hydrophobic RP-HPLC media e.g., silica gel having pendant methyl or other aliphatic groups
  • Some or all of the foregoing purification steps, in various combinations, can also be employed to provide a substantially homogeneous isolated recombinant protein.
  • the protein thus purified is substantially free of other mammalian proteins and is defined in accordance with the present invention as an "isolated protein.”
  • the protein of the invention may also be expressed as a product of transgenic animals, e.g., as a component of the milk of transgenic cows, goats, pigs, or sheep which are characterized by somatic or germ cells containing a nucleotide sequence encoding the protein.
  • the protein may also be produced by known conventional chemical synthesis.
  • the synthetically-constructed protein sequences by virtue of sharing primary, secondary or tertiary structural and/or conformational characteristics with proteins may possess biological properties in common therewith, including protein activity. Thus, they may be employed as biologically active or immunological substitutes for natural, purified proteins in screening of therapeutic compounds and in immunological processes for the development of antibodies.
  • the proteins provided herein also include proteins characterized by amino acid sequences similar to those of purified proteins but into which modification are naturally provided or deliberately engineered.
  • modifications in the peptide or DNA sequences can be made by those skilled in the art using known techniques.
  • Modifications of interest in the protein sequences may include the alteration, substitution, replacement, insertion or deletion of a selected amino acid residue in the coding sequence.
  • one or more of the cysteine residues may be deleted or replaced with another amino acid to alter the conformation of the molecule.
  • Techniques for such alteration, substitution, replacement, insertion or deletion are well known to those skilled in the art (see, e.g., U.S. Patent No.4,518,584).
  • such alteration, substitution, replacement, insertion or deletion retains the desired activity of the protein.
  • polynucleotides and proteins of the present invention are expected to exhibit one or more of the uses or biological activities (including those associated with assays cited herein) identified below.
  • Uses or activities described for proteins of the present invention may be provided by administration or use of such proteins or by administration or use of polynucleotides encoding such proteins (such as, for example, in gene therapies or vectors suitable for introduction of DNA).
  • the polynucleotides provided by the present invention can be used by the research community for various purposes.
  • the polynucleotides can be used to express recombinant protein for analysis, characterization or therapeutic use; as markers for tissues in which the corresponding protein is preferentially expressed (either constitutively or at a particular stage of tissue differentiation or development or in disease states); as molecular weight markers on Southern gels; as chromosome markers or tags (when labeled) to identify chromosomes or to map related gene positions; to compare with endogenous DNA sequences in patients to identify potential genetic disorders; as probes to hybridize and thus discover novel, related DNA sequences; as a source of information to derive PCR primers for genetic fingerprinting; as a probe to "subtract-out" known sequences in the process of discovering other novel polynucleotides; for selecting and making oligomers for attachment to a "gene chip” or other support, including for examination of expression patterns; to raise anti-protein antibodies using DNA im
  • the polynucleotide encodes a protein which binds or potentially binds to another protein (such as, for example, in a receptor-ligand interaction)
  • the polynucleotide can also be used in interaction trap assays (such as, for example, those described in Gyuris et al, 1993, Cell 75: 791-803 and in Rossi et al, 1997, Proc. Natl. Acad. Sci. USA 94: 8405-8410, all of which are incorporated by reference herein) to identify polynucleotides encoding the other protein with which binding occurs or to identify inhibitors of the binding interaction.
  • the proteins provided by the present invention can similarly be used in assay to determine biological activity, including in a panel of multiple proteins for high- throughput screening; to raise antibodies or to elicit another immune response; as a reagent (including the labeled reagent) in assays designed to quantitatively determine levels of the protein (or its receptor) in biological fluids; as markers for tissues in which the corresponding protein is preferentially expressed (either constitutively or at a particular stage of tissue differentiation or development or in a disease state); and, of course, to isolate correlative receptors or ligands.
  • the protein binds or potentially binds to another protein (such as, for example, in a receptor-ligand interaction)
  • the protein can be used to identify the other protein with which binding occurs or to identify inhibitors of the binding interaction. Proteins involved in these binding interactions can also be used to screen for peptide or small molecule inhibitors or agonists of the binding interaction. Any or all of these research utilities are capable of being developed into reagent grade or kit format for commercialization as research products.
  • Polynucleotides and proteins of the present invention can also be used as nutritional sources or supplements. Such uses include without limitation use as a protein or amino acid supplement, use as a carbon source, use as a nitrogen source and use as a source of carbohydrate.
  • the protein or polynucleotide of the invention can be added to the feed of a particular organism or can be administered as a separate solid or liquid preparation, such as in the form of powder, pills, solutions, suspensions or capsules.
  • the protein or polynucleotide of the invention can be added to the medium in or on which the microorganism is cultured.
  • a protein of the present invention may exhibit cytokine, cell proliferation (either inducing or inhibiting) or cell differentiation (either inducing or inhibiting) activity or may induce production of other cytokines in certain cell populations.
  • cytokine cytokine
  • cell proliferation either inducing or inhibiting
  • cell differentiation either inducing or inhibiting
  • the activity of a protein of the present invention is evidenced by any one of a number of routine factor dependent cell proliferation assays for cell lines including, without limitation, 32D, DA2, DA1G, T10, B9, B9/11, BaF3, MC9/G, M+ (preB M+), 2E8, RB5, DAI, 123, T1165, HT2, CTLL2, TF-1, Mo7e and CMK.
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Assays for T-cell or thymocyte proliferation include without limitation those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley- Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function 3.1-3.19; Chapter 7, Immunologic studies in Humans); Takai et al., J. Immunol. 137:3494-3500, 1986; Bertagnolli et al., J. Immunol.
  • Assays for cytokine production and /or proliferation of spleen cells, lymph node cells or thymocytes include, without limitation, those described in: Polyclonal T cell stimulation, Kruisbeek, A.M. and Shevach, E.M. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp.
  • Assays for proliferation and differentiation of hematopoietic and lymphopoietic cells include, without limitation, those described in: Measurement of Human and Murine
  • Interleukin 2 and Interleukin 4 Bottomly, K., Davis, L.S. and Lipsky, P.E. In Current
  • a protein of the present invention may also exhibit immune stimulating or immune suppressing activity, including without limitation the activities for which assays are described herein.
  • a protein may be useful in the treatment of various immune deficiencies and disorders (including severe combined immunodeficiency (SOD)), e.g., in regulating (up or down) growth and proliferation of T and /or B lymphocytes, as well as effecting the cytolytic activity of NK cells and other cell populations.
  • SOD severe combined immunodeficiency
  • These immune deficiencies may be genetic or be caused by viral (e.g., HIV) as well as bacterial or fungal infections, or may result from autoimmune disorders.
  • infectious diseases causes by viral, bacterial, fungal or other infection may be treatable using a protein of the present invention, including infections by HIV, hepatitis viruses, herpesviruses, mycobacteria, Leishmania spp., malaria spp. and various fungal infections such as candidiasis.
  • a protein of the present invention may also be useful where a boost to the immune system generally may be desirable, i.e., in the treatment of cancer.
  • Autoimmune disorders which may be treated using a protein of the present invention include, for example, connective tissue disease, multiple sclerosis, systemic lupus erythematosus, rheumatoid arthritis, autoimmune pulmonary inflammation, Guillain-Barre syndrome, autoimmune thyroiditis, insulin dependent diabetes mellitis, myasthenia gravis, graft-versus-host disease and autoimmune inflammatory eye disease.
  • a protein of the present invention may also to be useful in the treatment of allergic reactions and conditions, such as asthma (particularly allergic asthma) or other respiratory problems.
  • Other conditions, in which immune suppression is desired may also be treatable using a protein of the present invention.
  • Down regulation may be in the form of inhibiting or blocking an immune response already in progress or may involve preventing the induction of an immune response.
  • the functions of activated T cells may be inhibited by suppressing T cell responses or by inducing specific tolerance in T cells, or both.
  • Immunosuppression of T cell responses is generally an active, non-antigen-specific, process which requires continuous exposure of the T cells to the suppressive agent. Tolerance, which involves inducing non-responsiveness or anergy in T cells, is distinguishable from immunosuppression in that it is generally antigen-specific and persists after exposure to the tolerizing agent has ceased.
  • tolerance can be demonstrated by the lack of a T cell response upon reexposure to specific antigen in the absence of the tolerizing agent.
  • Down regulating or preventing one or more antigen functions including without limitation B lymphocyte antigen functions (such as , for example, B7)), e.g., preventing high level lymphokine synthesis by activated T cells, will be useful in situations of tissue, skin and organ transplantation and in graft-versus-host disease (GVHD).
  • B lymphocyte antigen functions such as , for example, B7
  • GVHD graft-versus-host disease
  • blockage of T cell function should result in reduced tissue destruction in tissue transplantation.
  • rejection of the transplant is initiated through its recognition as foreign by T cells, followed by an immune reaction that destroys the transplant.
  • a molecule which inhibits or blocks interaction of a B7 lymphocyte antigen with its natural ligand(s) on immune cells such as a soluble, monomeric form of a peptide having B7-2 activity alone or in conjunction with a monomeric form of a peptide having an activity of another B lymphocyte antigen (e.g., B7-
  • Blocking B lymphocyte antigen function in this matter prevents cytokine synthesis by immune cells, such as T cells, and thus acts as an immunosuppressant. Moreover, the lack of costimulation may also be sufficient to anergize the T cells, thereby inducing tolerance in a subject. Induction of long-term tolerance by B lymphocyte antigen-blocking reagents may avoid the necessity of repeated administration of these blocking reagents. To achieve sufficient immunosuppression or tolerance in a subject, it may also be necessary to block the function of a combination of
  • the efficacy of particular blocking reagents in preventing organ transplant rejection or GVHD can be assessed using animal models that are predictive of efficacy in humans.
  • appropriate systems which can be used include allogeneic cardiac grafts in rats and xenogeneic pancreatic islet cell grafts in mice, both of which have been used to examine the immunosuppressive effects of CTLA4Ig fusion proteins in vivo as described in Lenschow et al, Science 257:789-792 (1992) and Turka et al, Proc. Natl. Acad.
  • Blocking antigen function may also be therapeutically useful for treating autoimmune diseases.
  • Many autoimmune disorders are the result of inappropriate activation of T cells that are reactive against self tissue and which promote the production of cytokines and autoantibodies involved in the pathology of the diseases. Preventing the activation of autoreactive T cells may reduce or eliminate disease symptoms.
  • reagents which block costimulation of T cells by disrupting receptor igand interactions of B lymphocyte antigens can be used to inhibit T cell activation and prevent production of autoantibodies or T cell-derived cytokines which may be involved in the disease process. Additionally, blocking reagents may induce antigen-specific tolerance of autoreactive T cells which could lead to long-term relief from the disease.
  • the efficacy of blocking reagents in preventing or alleviating autoimmune disorders can be determined using a number of well-characterized animal models of human autoimmune diseases.
  • Examples include murine experimental autoimmune encephalitis, systemic lupus erythmatosis in MRL /Ipr/lpr mice or NZB hybrid mice, murine autoimmune collagen arthritis, diabetes mellitus in NOD mice and BB rats, and murine experimental myasthenia gravis (see Paul ed., Fundamental Immunology, Raven Press, New York, 1989, pp. 840-856).
  • Upregulation of an antigen function preferably a B lymphocyte antigen function
  • Upregulation of immune responses may be in the form of enhancing an existing immune response or eliciting an initial immune response.
  • enhancing an immune response through stimulating B lymphocyte antigen function may be useful in cases of viral infection.
  • systemic viral diseases such as influenza, the common cold, and encephalitis might be alleviated by the administration of stimulatory forms of B lymphocyte antigens systemically.
  • anti-viral immune responses may be enhanced in an infected patient by removing T cells from the patient, costimulating the T cells in vitro with viral antigen- pulsed APCs either expressing a peptide of the present invention or together with a stimulatory form of a soluble peptide of the present invention and reintroducing the in vitro activated T cells into the patient.
  • Another method of enhancing anti-viral immune responses would be to isolate infected cells from a patient, transfect them with a nucleic acid encoding a protein of the present invention as described herein such that the cells express all or a portion of the protein on their surface, and reintroduce the transfected cells into the patient.
  • the infected cells would now be capable of delivering a costimulatory signal to, and thereby activate, T cells in vivo.
  • up regulation or enhancement of antigen function may be useful in the induction of tumor immunity.
  • Tumor cells e.g., sarcoma, melanoma, lymphoma, leukemia, neuroblastoma, carcinoma
  • a nucleic acid encoding at least one peptide of the present invention can be administered to a subject to overcome tumor-specific tolerance in the subject. If desired, the tumor cell can be transfected to express a combination of peptides.
  • tumor cells obtained from a patient can be transfected ex vivo with an expression vector directing the expression of a peptide having B7-2-like activity alone, or in conjunction with a peptide having B7-l-like activity and/or B7-3-like activity.
  • the transfected tumor cells are returned to the patient to result in expression of the peptides on the surface of the transfected cell.
  • gene therapy techniques can be used to target a tumor cell for transfection in vivo.
  • tumor cells which lack MHC class I or MHC class II molecules, or which fail to reexpress sufficient amounts of MHC class I or MHC class II molecules, can be transfected with nucleic acid encoding all or a portion of (e.g., a cytoplasmic-domain truncated portion) of an MHC class I ⁇ chain protein and ⁇ 2 microglobulin protein or an MHC class II chain protein and an MHC class II ⁇ chain protein to thereby express MHC class I or MHC class II proteins on the cell surface.
  • nucleic acid encoding all or a portion of (e.g., a cytoplasmic-domain truncated portion) of an MHC class I ⁇ chain protein and ⁇ 2 microglobulin protein or an MHC class II chain protein and an MHC class II ⁇ chain protein to thereby express MHC class I or MHC class II proteins on the cell surface.
  • a gene encoding an antisense construct which blocks expression of an MHC class II associated protein, such as the invariant chain can also be cotransfected with a DNA encoding a peptide having the activity of a B lymphocyte antigen to promote presentation of tumor associated antigens and induce tumor specific immunity.
  • a T cell mediated immune response in a human subject may be sufficient to overcome tumor-specific tolerance in the subject.
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Suitable assays for thymocyte or splenocyte cytotoxicity include, without limitation, those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function 3.1- 3.19; Chapter 7, Immunologic studies in Humans); Herrmann et al., Proc. Natl. Acad. Sci. USA 78:2488-2492, 1981; Herrmann et al., J. Immunol. 128:1968-1974, 1982; Handa et al., J. Immunol.
  • T-cell-dependent immunoglobulin responses and isotype switching (which will identify, among others, proteins that modulate T-cell dependent antibody responses and that affect Thl /Th2 profiles) include, without limitation, those described in: Maliszewski, J. Immunol. 144:3028-3033, 1990; and Assays for B cell function: In vitro antibody production, Mond, J.J. and Brunswick, M. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 3.8.1-3.8.16, John Wiley and Sons, Toronto. 1994.
  • MLR Mixed lymphocyte reaction
  • Dendritic cell-dependent assays (which will identify, among others, proteins expressed by dendritic cells that activate naive T-cells) include, without limitation, those described in: Guery et al., J. Immunol. 134:536-544, 1995; Inaba et al., Journal of Experimental Medicine 173:549-559, 1991; Macatonia et al., Journal of Immunology 154:5071-5079, 1995; Porgador et al., Journal of Experimental Medicine 182:255-260, 1995; Nair et al., Journal of Virology 67:4062-4069, 1993; Huang et al., Science 264:961-965, 1994; Macatonia et al., Journal of Experimental Medicine 169:1255-1264, 1989; Bhardwaj et al., Journal of Clinical Investigation 94:797-807, 1994; and Inaba et al., Journal of Experimental Medicine 172:631-640, 1990.
  • lymphocyte survival /apoptosis (which will identify, among others, proteins that prevent apoptosis after superantigen induction and proteins that regulate lymphocyte homeostasis) include, without limitation, those described in: Darzynkiewicz et al., Cytometry 13:795-808, 1992; Gorczyca et al., Leukemia 7:659-670, 1993; Gorczyca et al., Cancer Research 53:1945-1951, 1993; Itoh et al., Cell 66:233-243, 1991; Zacharchuk, Journal of Immunology 145:4037-4045, 1990; Zamai et al., Cytometry 14:891-897, 1993; Gorczyca et al., International Journal of Oncology 1:639-648, 1992.
  • a protein of the present invention may be useful in regulation of hematopoiesis and, consequently, in the treatment of myeloid or lymphoid cell deficiencies. Even marginal biological activity in support of colony forming cells or of factor-dependent cell lines indicates involvement in regulating hematopoiesis, e.g.
  • erythroid progenitor cells alone or in combination with other cytokines, thereby indicating utility, for example, in treating various anemias or for use in conjunction with irradiation /chemotherapy to stimulate the production of erythroid precursors and /or erythroid cells; in supporting the growth and proliferation of myeloid cells such as granulocytes and monocytes/macrophages (i.e., traditional CSF activity) useful, for example, in conjunction with chemotherapy to prevent or treat consequent myelo-suppression; in supporting the growth and proliferation of megakaryocytes and consequently of platelets thereby allowing prevention or treatment of various platelet disorders such as thrombocytopenia, and generally for use in place of or complimentary to platelet transfusions; and /or in supporting the growth and proliferation of hematopoietic stem cells which are capable of maturing to any and all of the above- mentioned hematopoietic cells and therefore find therapeutic utility in various stem cell disorders (such as those usually treated with
  • the activity of a protein of the invention may, among other means, be measured by the following methods: Suitable assays for proliferation and differentiation of various hematopoietic lines are cited above.
  • Assays for embryonic stem cell differentiation include, without limitation, those described in: Johansson et al. Cellular Biology 15:141-151, 1995; Keller et al., Molecular and Cellular Biology 13:473-486, 1993; McClanahan et al., Blood 81:2903-2915, 1993.
  • Assays for stem cell survival and differentiation include, without limitation, those described in: Methylcellulose colony forming assays, Freshney, M.G. In Culture of Hematopoietic Cells. R.I. Freshney, et al eds. Vol pp. 265-268, Wiley-Liss, Inc., New York,
  • a protein of the present invention also may have utility in compositions used for bone, cartilage, tendon, ligament and /or nerve tissue growth or regeneration, as well as for wound healing and tissue repair and replacement, and in the treatment of burns, incisions and ulcers.
  • a protein of the present invention which induces cartilage and /or bone growth in circumstances where bone is not normally formed, has application in the healing of bone fractures and cartilage damage or defects in humans and other animals.
  • Such a preparation employing a protein of the invention may have prophylactic use in closed as well as open fracture reduction and also in the improved fixation of artificial joints. De novo bone formation induced by an osteogenic agent contributes to the repair of congenital, trauma induced, or oncologic resection induced craniofacial defects, and also is useful in cosmetic plastic surgery.
  • a protein of this invention may also be used in the treatment of periodontal disease, and in other tooth repair processes. Such agents may provide an environment to attract bone-forming cells, stimulate growth of bone-forming cells or induce differentiation of progenitors of bone-forming cells.
  • a protein of the invention may also be useful in the treatment of osteoporosis or osteoarthritis, such as through stimulation of bone and /or cartilage repair or by blocking inflammation or processes of tissue destruction (collagenase activity, osteoclast activity, etc.) mediated by inflammatory processes.
  • Another category of tissue regeneration activity that may be attributable to the protein of the present invention is tendon /ligament formation.
  • a protein of the present invention which induces tendon /ligament-like tissue or other tissue formation in circumstances where such tissue is not normally formed, has application in the healing of tendon or ligament tears, deformities and other tendon or ligament defects in humans and other animals.
  • Such a preparation employing a tendon/ligament-like tissue inducing protein may have prophylactic use in preventing damage to tendon or ligament tissue, as well as use in the improved fixation of tendon or ligament to bone or other tissues, and in repairing defects to tendon or ligament tissue.
  • compositions of the present invention contributes to the repair of congenital, trauma induced, or other tendon or ligament defects of other origin, and is also useful in cosmetic plastic surgery for attachment or repair of tendons or ligaments.
  • the compositions of the present invention may provide an environment to attract tendon- or ligament-forming cells, stimulate growth of tendon- or ligament-forming cells, induce differentiation of progenitors of tendon- or ligament-forming cells, or induce growth of tendon/ligament cells or progenitors ex vivo for return in vivo to effect tissue repair.
  • the compositions of the invention may also be useful in the treatment of tendinitis, carpal tunnel syndrome and other tendon or ligament defects.
  • the compositions may also include an appropriate matrix and /or sequestering agent as a carrier as is well known in the art.
  • the protein of the present invention may also be useful for proliferation of neural cells and for regeneration of nerve and brain tissue, i.e. for the treatment of central and peripheral nervous system diseases and neuropathies, as well as mechanical and traumatic disorders, which involve degeneration, death or trauma to neural cells or nerve tissue. More specifically, a protein may be used in the treatment of diseases of the peripheral nervous system, such as peripheral nerve injuries, peripheral neuropathy and localized neuropathies, and central nervous system diseases, such as Alzheimer's, Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis, and Shy-Drager syndrome. Further conditions which may be treated in accordance with the present invention include mechanical and traumatic disorders, such as spinal cord disorders, head trauma and cerebrovascular diseases such as stroke. Peripheral neuropathies resulting from chemotherapy or other medical therapies may also be treatable using a protein of the invention.
  • Proteins of the invention may also be useful to promote better or faster closure of non-healing woimds, including without limitation pressure ulcers, ulcers associated with vascular insufficiency, surgical and traumatic wounds, and the like.
  • a protein of the present invention may also exhibit activity for generation or regeneration of other tissues, such as organs (including, for example, pancreas, liver, intestine, kidney, skin, endothelium), muscle (smooth, skeletal or cardiac) and vascular (including vascular endothelium) tissue, or for promoting the growth of cells comprising such tissues. Part of the desired effects may be by inhibition or modulation of fibrotic scarring to allow normal tissue to regenerate.
  • a protein of the invention may also exhibit angiogenic activity.
  • a protein of the present invention may also be useful for gut protection or regeneration and treatment of lung or liver fibrosis, reperfusion injury in various tissues, and conditions resulting from systemic cytokine damage.
  • a protein of the present invention may also be useful for promoting or inhibiting differentiation of tissues described above from precursor tissues or cells; or for inhibiting the growth of tissues described above.
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Assays for tissue generation activity include, without limitation, those described in: International Patent Publication No. W095/ 16035 (bone, cartilage, tendon); International Patent Publication No. W095/ 05846 (nerve, neuronal); International Patent Publication No. WO91/07491 (skin, endothelium ).
  • Assays for wound healing activity include, without limitation, those described in: Winter, Epidermal Wound Healing, pps. 71-112 (Maibach, HI and Rovee, DT, eds.), Year Book Medical Publishers, Inc., Chicago, as modified by Eaglstein and Mertz, J. Invest. Dermatol 71:382-84 (1978).
  • a protein of the present invention may also exhibit activin- or inhibin-related activities. Inhibins are characterized by their ability to inhibit the release of follicle stimulating hormone (FSH), while activins and are characterized by their ability to stimulate the release of follicle stimulating hormone (FSH).
  • FSH follicle stimulating hormone
  • a protein of the present invention alone or in heterodimers with a member of the inhibin ⁇ family, may be useful as a contraceptive based on the ability of inhibins to decrease fertility in female mammals and decrease spermatogenesis in male mammals. Administration of sufficient amounts of other inhibins can induce infertility in these mammals.
  • the protein of the invention may be useful as a fertility inducing therapeutic, based upon the ability of activin molecules in stimulating FSH release from cells of the anterior pituitary. See, for example, United States Patent 4,798,885.
  • a protein of the invention may also be useful for advancement of the onset of fertility in sexually immature mammals, so as to increase the lifetime reproductive performance of domestic animals such as cows, sheep and pigs.
  • the activity of a protein of the invention may, among other means, be measured by the following methods: Assays for activin/inhibin activity include, without limitation, those described in: Vale et al., Endocrinology 91:562-572, 1972; Ling et al., Nature 321:779-782, 1986; Vale et al., Nature 321:776-779, 1986; Mason et al., Nature 318:659-663, 1985; Forage et al., Proc. Natl. Acad. Sci. USA 83:3091-3095, 1986.
  • a protein of the present invention may have chemotactic or chemokinetic activity (e.g., act as a chemokine) for mammalian cells, including, for example, monocytes, fibroblasts, neutrophils, T-cells, mast cells, eosinophils, epithelial and /or endothelial cells.
  • Chemotactic and chemokinetic proteins can be used to mobilize or attract a desired cell population to a desired site of action.
  • Chemotactic or chemokinetic proteins provide particular advantages in treatment of wounds and other trauma to tissues, as well as in treatment of localized infections. For example, attraction of lymphocytes, monocytes or neutrophils to tumors or sites of infection may result in improved immune responses against the tumor or infecting agent.
  • a protein or peptide has chemotactic activity for a particular cell population if it can stimulate, directly or indirectly, the directed orientation or movement of such cell population.
  • the protein or peptide has the ability to directly stimulate directed movement of cells. Whether a particular protein has chemotactic activity for a population of cells can be readily determined by employing such protein or peptide in any known assay for cell chemotaxis.
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Assays for chemotactic activity consist of assays that measure the ability of a protein to induce the migration of cells across a membrane as well as the ability of a protein to induce the adhesion of one cell population to another cell population.
  • Suitable assays for movement and adhesion include, without limitation, those described in: Current Protocols in Immunology, Ed by J.E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W.Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 6.12, Measurement of alpha and beta Chemokines 6.12.1-6.12.28; Taub et al. J. Clin. Invest.
  • a protein of the invention may also exhibit hemostatic or thrombolytic activity. As a result, such a protein is expected to be useful in treatment of various coagulation disorders (including hereditary disorders, such as hemophilias) or to enhance coagulation and other hemostatic events in treating wounds resulting from trauma, surgery or other causes.
  • a protein of the invention may also be useful for dissolving or inhibiting formation of thromboses and for treatment and prevention of conditions resulting therefrom (such as, for example, infarction of cardiac and central nervous system vessels (e.g., stroke).
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Assay for hemostatic and thrombolytic activity include, without limitation, those described in: Linet et al., J. Clin. Pharmacol. 26:131-140, 1986; Burdick et al., Thrombosis Res.45:413-419, 1987; Humphrey et al., Fibrinolysis 5:71-79 (1991); Schaub, Prostaglandins 35:467-474, 1988.
  • a protein of the present invention may also demonstrate activity as receptors, receptor ligands or inhibitors or agonists of receptor /ligand interactions.
  • receptors and ligands include, without limitation, cytokine receptors and their ligands, receptor kinases and their ligands, receptor phosphatases and their ligands, receptors involved in cell-cell interactions and their ligands (including without limitation, cellular adhesion molecules (such as selectins, integrins and their ligands) and receptor/ligand pairs involved in antigen presentation, antigen recognition and development of cellular and humoral immune responses).
  • Receptors and ligands are also useful for screening of potential peptide or small molecule inhibitors of the relevant receptor/ligand interaction.
  • a protein of the present invention (including, without limitation, fragments of receptors and ligands) may themselves be useful as inhibitors of receptor/ligand interactions.
  • the activity of a protein of the invention may, among other means, be measured by the following methods:
  • Suitable assays for receptor-ligand activity include without limitation those described imCurrent Protocols in Immunology, Ed by J.E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W.Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 7.28, Measurement of Cellular Adhesion under static conditions 7.28.1-7.28.22), Takai et al., Proc. Natl. Acad. Sci. USA 84:6864-6868, 1987; Bierer et al., J. Exp. Med. 168:1145-1156, 1988; Rosenstein et al., J. Exp. Med. 169:149-160 1989; Stoltenborg et al., J. Immunol. Methods 175:59-68, 1994; Stitt et al., Cell 80:661-670, 1995.
  • Proteins of the present invention may also exhibit anti-inflammatory activity.
  • the anti-inflammatory activity may be achieved by providing a stimulus to cells involved in the inflammatory response, by inhibiting or promoting cell-cell interactions (such as, for example, cell adhesion), by inhibiting or promoting chemotaxis of cells involved in the inflammatory process, inhibiting or promoting cell extravasation, or by stimulating or suppressing production of other factors which more directly inhibit or promote an inflammatory response.
  • Proteins exhibiting such activities can be used to treat inflammatory conditions including chronic or acute conditions), including without limitation inflammation associated with infection (such as septic shock, sepsis or systemic inflammatory response syndrome (SIRS)), ischemia-reperfusion injury, endotoxin lethality, arthritis, complement-mediated hyperacute rejection, nephritis, cytokine or chemokine-induced lung injury, inflammatory bowel disease, Crohn's disease or resulting from over production of cytokines such as TNF or IL-1. Proteins of the invention may also be useful to treat anaphylaxis and hypersensitivity to an antigenic substance or material.
  • infection such as septic shock, sepsis or systemic inflammatory response syndrome (SIRS)
  • ischemia-reperfusion injury such as endotoxin lethality, arthritis, complement-mediated hyperacute rejection, nephritis, cytokine or chemokine-induced lung injury, inflammatory bowel disease, Crohn's disease or resulting
  • Cadherins are calcium-dependent adhesion molecules that appear to play major roles during development, particularly in defining specific cell types. Loss or alteration of normal cadherin expression can lead to changes in cell adhesion properties linked to tumor growth and metastasis. Cadherin malfunction is also implicated in other human diseases, such as pemphigus vulgaris and pemphigus foliaceus (auto-immune blistering skin diseases), Crohn's disease, and some developmental abnormalities.
  • the cadherin superfamily includes well over forty members, each with a distinct pattern of expression. All members of the superfamily have in common conserved extracellular repeats (cadherin domains), but structural differences are found in other parts of the molecule.
  • the cadherin domains bind calcium to form their tertiary structure and thus calcium is required to mediate their adhesion. Only a few amino acids in the first cadherin domain provide the basis for homophilic adhesion; modification of this recognition site can change the specificity of a cadherin so that instead of recognizing only itself, the mutant molecule can now also bind to a different cadherin. In addition, some cadherins engage in heterophilic adhesion with other cadherins. E-cadherin, one member of the cadherin superfamily, is expressed in epithelial cell types. Pathologically, if E-cadherin expression is lost in a tumor, the malignant cells become invasive and the cancer metastasizes.
  • Transfection of cancer cell lines with polynucleotides expressing E-cadherin has reversed cancer-associated changes by returning altered cell shapes to normal, restoring cells' adhesiveness to each other and to their substrate, decreasing the cell growth rate, and drastically reducing anchorage- independent cell growth.
  • reintroducing E-cadherin expression reverts carcinomas to a less advanced stage. It is likely that other cadherins have the same invasion suppressor role in carcinomas derived from other tissue types. Therefore, proteins of the present invention with cadherin activity, and polynucleotides of the present invention encoding such proteins, can be used to treat cancer. Introducing such proteins or polynucleotides into cancer cells can reduce or eliminate the cancerous changes observed in these cells by providing normal cadherin expression.
  • Cancer cells have also been shown to express cadherins of a different tissue type than their origin, thus allowing these cells to invade and metastasize in a different tissue in the body.
  • Proteins of the present invention with cadherin activity, and polynucleotides of the present invention encoding such proteins, can be substituted in these cells for the inappropriately expressed cadherins, restoring normal cell adhesive properties and reducing or eliminating the tendency of the cells to metastasize.
  • proteins of the present invention with cadherin activity can be used to generate antibodies recognizing and binding to cadherins.
  • Such antibodies can be used to block the adhesion of inappropriately expressed tumor-cell cadherins, preventing the cells from forming a tumor elsewhere.
  • Such an anti-cadherin antibody can also be used as a marker for the grade, pathological type, and prognosis of a cancer, i.e. the more progressed the cancer, the less cadherin expression there will be, and this decrease in cadherin expression can be detected by the use of a cadherin-binding antibody.
  • Fragments of proteins of the present invention with cadherin activity can also be used to block cadherin function by binding to cadherins and preventing them from binding in ways that produce undesirable effects. Additionally, fragments of proteins of the present invention with cadherin activity, preferably truncated soluble cadherin fragments which have been found to be stable in the circulation of cancer patients, and polynucleotides encoding such protein fragments, can be used to disturb proper cell-cell adhesion.
  • Assays for cadherin adhesive and invasive suppressor activity include, without limitation, those described in: Hortsch et al. J Biol Chem 270 (32): 18809-18817, 1995; Miyaki et al. Oncogene 11: 2547-2552, 1995; Ozawa et al. Cell 63: 1033-1038, 1990.
  • a protein of the invention may exhibit other anti-tumor activities.
  • a protein may inhibit tumor growth directly or indirectly (such as, for example, via ADCC).
  • a protein may exhibit its tumor inhibitory activity by acting on tumor tissue or tumor precursor tissue, by inhibiting formation of tissues necessary to support tumor growth (such as, for example, by inhibiting angiogenesis), by causing production of other factors, agents or cell types which inhibit tumor growth, or by suppressing, eliminating or inhibiting factors, agents or cell types which promote tumor growth.
  • a protein of the invention may also exhibit one or more of the following additional activities or effects: inhibiting the growth, infection or function of, or killing, infectious agents, including, without limitation, bacteria, viruses, fungi and other parasites; effecting (suppressing or enhancing) bodily characteristics, including, without limitation, height, weight, hair color, eye color, skin, fat to lean ratio or other tissue pigmentation, or organ or body part size or shape (such as, for example, breast augmentation or diminution, change in bone form or shape); effecting biorhythms or caricadic cycles or rhythms; effecting the fertility of male or female subjects; effecting the metabolism, catabolism, anabolism, processing, utilization, storage or elimination of dietary fat, lipid, protein, carbohydrate, vitamins, minerals, cofactors or other nutritional factors or component(s); effecting behavioral characteristics, including, without limitation, appetite, libido, stress, cognition (including cognitive disorders), depression (including depressive disorders) and violent behaviors; providing analgesic effects or other pain reducing effects; promoting differentiation and
  • a protein of the present invention may be used in a pharmaceutical composition when combined with a pharmaceutically acceptable carrier.
  • a pharmaceutically acceptable carrier may also contain (in addition to protein and a carrier) diluents, fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art.
  • pharmaceutically acceptable means a non-toxic material that does not interfere with the effectiveness of the biological activity of the active ingredient(s). The characteristics of the carrier will depend on the route of administration.
  • the pharmaceutical composition of the invention may also contain cytokines, lymphokines, or other hematopoietic factors such as M-CSF, GM-CSF, TNF, IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-11, IL-12, IL-13, IL-14, IL-15, IFN, TNFO, TNFl, TNF2, G-CSF, Meg-CSF, thrombopoietin, stem cell factor, and erythropoietin.
  • the pharmaceutical composition may further contain other agents which either enhance the activity of the protein or compliment its activity or use in treatment.
  • protein of the present invention may be included in formulations of the particular cytokine, lymphokine, other hematopoietic factor, thrombolytic or anti-thrombotic factor, or anti-inflammatory agent to minimize side effects of the cytokine, lymphokine, other hematopoietic factor, thrombolytic or anti-thrombotic factor, or anti-inflammatory agent.
  • a protein of the present invention may be active in multimers (e.g., heterodimers or homodimers) or complexes with itself or other proteins.
  • compositions of the invention may comprise a protein of the invention in such multimeric or complexed form.
  • the pharmaceutical composition of the invention may be in the form of a complex of the protein(s) of present invention along with protein or peptide antigens.
  • the protein and/or peptide antigen will deliver a stimulatory signal to both B and T lymphocytes.
  • B lymphocytes will respond to antigen through their surface immunoglobulin receptor.
  • T lymphocytes will respond to antigen through the T cell receptor (TCR) following presentation of the antigen by MHC proteins.
  • TCR T cell receptor
  • MHC and structurally related proteins including those encoded by class I and class II MHC genes on host cells will serve to present the peptide antigen(s) to T lymphocytes.
  • the antigen components could also be supplied as purified MHC-peptide complexes alone or with co-stimulatory molecules that can directly signal T cells.
  • antibodies able to bind surface immunolgobulin and other molecules on B cells as well as antibodies able to bind the TCR and other molecules on T cells can be combined with the pharmaceutical composition of the invention.
  • the pharmaceutical composition of the invention may be in the form of a liposome in which protein of the present invention is combined, in addition to other pharmaceutically acceptable carriers, with amphipathic agents such as lipids which exist in aggregated form as micelles, insoluble monolayers, liquid crystals, or lamellar layers in aqueous solution.
  • Suitable lipids for liposomal formulation include, without limitation, monoglycerides, diglycerides, sulfatides, lysolecithin, phospholipids, saponin, bile acids, and the like. Preparation of such liposomal formulations is within the level of skill in the art, as disclosed, for example, in U.S. Patent No. 4,235,871; U.S. Patent No. 4,501,728; U.S. Patent No. 4,837,028; and U.S. Patent No. 4,737,323, all of which are incorporated herein by reference.
  • the term "therapeutically effective amount” means the total amount of each active component of the pharmaceutical composition or method that is sufficient to show a meaningful patient benefit, i.e., treatment, healing, prevention or amelioration of the relevant medical condition, or an increase in rate of treatment, healing, prevention or amelioration of such conditions.
  • a meaningful patient benefit i.e., treatment, healing, prevention or amelioration of the relevant medical condition, or an increase in rate of treatment, healing, prevention or amelioration of such conditions.
  • the term refers to that ingredient alone.
  • the term refers to combined amounts of the active ingredients that result in the therapeutic effect, whether administered in combination, serially or simultaneously.
  • a therapeutically effective amount of protein of the present invention is administered to a mammal having a condition to be treated.
  • Protein of the present invention may be administered in accordance with the method of the invention either alone or in combination with other therapies such as treatments employing cytokines, lymphokines or other hematopoietic factors.
  • protein of the present invention may be administered either simultaneously with the cytokine(s), lymphokine(s), other hematopoietic factor(s), thrombolytic or anti-thrombotic factors, or sequentially. If administered sequentially, the attending physician will decide on the appropriate sequence of administering protein of the present invention in combination with cytokine(s), lymphokine(s), other hematopoietic factor(s), thrombolytic or anti-thrombotic factors.
  • Administration of protein of the present invention used in the pharmaceutical composition or to practice the method of the present invention can be carried out in a variety of conventional ways, such as oral ingestion, inhalation, topical application or cutaneous, subcutaneous, intraperitoneal, parenteral or intravenous injection. Intravenous administration to the patient is preferred.
  • protein of the present invention When a therapeutically effective amount of protein of the present invention is administered orally, protein of the present invention will be in the form of a tablet, capsule, powder, solution or elixir.
  • the pharmaceutical composition of the invention may additionally contain a solid carrier such as a gelatin or an adjuvant.
  • the tablet, capsule, and powder contain from about 5 to 95% protein of the present invention, and preferably from about 25 to 90% protein of the present invention.
  • a liquid carrier such as water, petroleum, oils of animal or plant origin such as peanut oil, mineral oil, soybean oil, or sesame oil, or synthetic oils may be added.
  • the liquid form of the pharmaceutical composition may further contain physiological saline solution, dextrose or other saccharide solution, or glycols such as ethylene glycol, propylene glycol or polyethylene glycol.
  • the pharmaceutical composition contains from about 0.5 to 90% by weight of protein of the present invention, and preferably from about 1 to 50% protein of the present invention.
  • protein of the present invention will be in the form of a pyrogen-free, parenterally acceptable aqueous solution.
  • the preparation of such parenterally acceptable protein solutions having due regard to pH, isotonicity, stability, and the like, is within the skill in the art.
  • a preferred pharmaceutical composition for intravenous, cutaneous, or subcutaneous injection should contain, in addition to protein of the present invention, an isotonic vehicle such as Sodium Chloride Injection, Ringer's Injection, Dextrose Injection, Dextrose and Sodium Chloride Injection, Lactated Ringer's Injection, or other vehicle as known in the art.
  • the pharmaceutical composition of the present invention may also contain stabilizers, preservatives, buffers, antioxidants, or other additives known to those of skill in the art.
  • the amount of protein of the present invention in the pharmaceutical composition of the present invention will depend upon the nature and severity of the condition being treated, and on the nature of prior treatments which the patient has undergone.
  • the attending physician will decide the amount of protein of the present invention with which to treat each individual patient. Initially, the attending physician will administer low doses of protein of the present invention and observe the patient's response. Larger doses of protein of the present invention may be administered until the optimal therapeutic effect is obtained for the patient, and at that point the dosage is not increased further. It is contemplated that the various pharmaceutical compositions used to practice the method of the present invention should contain about 0.01 ⁇ g to about 100 mg (preferably about O.lng to about 10 mg, more preferably about 0.1 ⁇ g to about 1 mg) of protein of the present invention per kg body weight.
  • the duration of intravenous therapy using the pharmaceutical composition of the present invention will vary, depending on the severity of the disease being treated and the condition and potential idiosyncratic response of each individual patient. It is contemplated that the duration of each application of the protein of the present invention will be in the range of 12 to 24 hours of continuous intravenous administration. Ultimately the attending physician will decide on the appropriate duration of intravenous therapy using the pharmaceutical composition of the present invention.
  • Protein of the invention may also be used to immunize animals to obtain polyclonal and monoclonal antibodies which specifically react with the protein. Such antibodies may be obtained using either the entire protein or fragments thereof as an immunogen.
  • the peptide immunogens additionally may contain a cysteine residue at the carboxyl terminus, and are conjugated to a hapten such as keyhole limpet hemocyanin
  • Monoclonal antibodies binding to the protein of the invention may be useful diagnostic agents for the immunodetection of the protein.
  • Neutralizing monoclonal antibodies binding to the protein may also be useful therapeutics for both conditions associated with the protein and also in the treatment of some forms of cancer where abnormal expression of the protein is involved.
  • neutralizing monoclonal antibodies against the protein may be useful in detecting and preventing the metastatic spread of the cancerous cells, which may be mediated by the protein.
  • the therapeutic method includes administering the composition topically, systematically, or locally as an implant or device.
  • the therapeutic composition for use in this invention is, of course, in a pyrogen-free, physiologically acceptable form.
  • the composition may desirably be encapsulated or injected in a viscous form for delivery to the site of bone, cartilage or tissue damage.
  • Topical administration may be suitable for wound healing and tissue repair.
  • Therapeutically useful agents other than a protein of the invention which may also optionally be included in the composition as described above, may alternatively or additionally, be administered simultaneously or sequentially with the composition in the methods of the invention.
  • the composition would include a matrix capable of delivering the protein-containing composition to the site of bone and /or cartilage damage, providing a structure for the developing bone and cartilage and optimally capable of being resorbed into the body.
  • Such matrices may be formed of materials presently in use for other implanted medical applications.
  • compositions may be biodegradable and chemically defined calcium sulfate, tricalciumphosphate, hydroxyapatite, polylactic acid, polyglycolic acid and polyanhydrides.
  • potential materials are biodegradable and biologically well- defined, such as bone or dermal collagen.
  • Further matrices are comprised of pure proteins or extracellular matrix components.
  • Other potential matrices are nonbiodegradable and chemically defined, such as sintered hydroxapatite, bioglass, aluminates, or other ceramics.
  • Matrices may be comprised of combinations of any of the above mentioned types of material, such as polylactic acid and hydroxyapatite or collagen and tricalciumphosphate.
  • the bioceramics may be altered in composition, such as in calcium- alu ⁇ iinate-phosphate and processing to alter pore size, particle size, particle shape, and biodegradability.
  • a 50:50 (mole weight) copolymer of lactic acid and glycolic acid in the form of porous particles having diameters ranging from 150 to 800 microns.
  • a sequestering agent such as carboxymethyl cellulose or autologous blood clot, to prevent the protein compositions from disassociating from the matrix.
  • a preferred family of sequestering agents is cellulosic materials such as alkylcelluloses (including hydroxyalkylcelluloses), including methylcellulose, ethylcellulose, hydroxyethylcellulose, hydroxypropylcellulose, hydroxypropyl- methylcellulose, and carboxymethylcellulose, the most preferred being cationic salts of carboxymethylcellulose (CMC).
  • CMC carboxymethylcellulose
  • Other preferred sequestering agents include hyaluronic acid, sodium alginate, poly(ethylene glycol), polyoxyethylene oxide, carboxyvinyl polymer and poly(vinyl alcohol).
  • the amount of sequestering agent useful herein is 0.5-20 wt%, preferably 1-10 wt% based on total formulation weight, which represents the amount necessary to prevent desorbtion of the protein from the polymer matrix and to provide appropriate handling of the composition, yet not so much that the progenitor cells are prevented from infiltrating the matrix, thereby providing the protein the opportunity to assist the osteogenic activity of the progenitor cells.
  • proteins of the invention may be combined with other agents beneficial to the treatment of the bone and /or cartilage defect, wound, or tissue in question. These agents include various growth factors such as epidermal growth factor (EGF), platelet derived growth factor (PDGF), transforming growth factors (TGF- and TGF- ⁇ ), and insulin-like growth factor (IGF).
  • EGF epidermal growth factor
  • PDGF platelet derived growth factor
  • TGF- and TGF- ⁇ transforming growth factors
  • IGF insulin-like growth factor
  • the therapeutic compositions are also presently valuable for veterinary applications. Particularly domestic animals and thoroughbred horses, in addition to humans, are desired patients for such treatment with proteins of the present invention.
  • the dosage regimen of a protein-containing pharmaceutical composition to be used in tissue regeneration will be determined by the attending physician considering various factors which modify the action of the proteins, e.g., amount of tissue weight desired to be formed, the site of damage, the condition of the damaged tissue, the size of a wound, type of damaged tissue (e.g., bone), the patient's age, sex, and diet, the severity of any infection, time of administration and other clinical factors.
  • the dosage may vary with the type of matrix used in the reconstitution and with inclusion of other proteins in the pharmaceutical composition.
  • IGF I insulin like growth factor I
  • the addition of other known growth factors, such as IGF I may also effect the dosage.
  • Progress can be monitored by periodic assessment of tissue /bone growth and /or repair, for example, X-rays, histomorphometric determinations and tetracycline labeling.
  • Polynucleotides of the present invention can also be used for gene therapy. Such polynucleotides can be introduced either in vivo or ex vivo into cells for expression in a mammalian subject. Polynucleotides of the invention may also be administered by other known methods for introduction of nucleic acid into a cell or organism (including, without limitation, in the form of viral vectors or naked DNA).
  • Cells may also be cultured ex vivo in the presence of proteins of the present invention in order to proliferate or to produce a desired effect on or activity in such cells. Treated cells can then be introduced in vivo for therapeutic purposes.
  • CTCTCCTCTC CTGCAGGTGT CTATCCACCT GGGGTATGGC ATCTACCGAC CTGTCTCCCT 180
  • GGGGTCACAT GCTTTGTTTC CATTCTTGTC CTGGCTGGAC CAGCCACTGT GGGACCAACA 240
  • CTCTTTGTCA GTCTGGGTGT CTCAGGTTCT GTGTGTCCTT GTGTGCATTT CTGTCTCTCT 600
  • TCCCCTCCCC CACTCTATAC TAGGGACTGG ATCTCAGCCT CTGATCAGTT TCACAAAGTT 1140
  • CTTCTCTCCA TCCTCAAAGC CCCCACTTCT CTCCAGGCTG TTTCTTTTTT TATGACTGTA 1320
  • Lys Pro lie Val Pro Leu Ala Ala Val Cys Val Arg Val His Val Cys 85 90 95
  • CTGTCTATAT ACGCCTAACA CCTACATATA TTTTAAAAAC ATTAAATATA ATTAACAATC 240
  • Glu Tyr lie Gly Ser Gin Asn Ala Ser Arg Gly Arg Arg Gin Arg Arg 20 25 30
  • Leu Glu Arg lie Gly Met Lys Gin lie Gly Val Cys Leu Ser Ser Cys 65 70 75 80
  • Arg Glu lie lie Gin His Pro Ser Ala Lys Gly Asn Leu Cys Pro Pro 180 185 190
  • Lys Gly Glu Ser Lys Glu Ala lie Pro Asp Ser Lys Ser Leu Glu Ser 225 230 235 240
  • Glu lie Leu Ala Asn Tyr Arg Lys Gly Gin Glu Glu lie Val Thr Leu 210 215 220
  • Gin Glu Asn Asp Lys Leu Lys Lys Glu lie Phe Thr Leu Gin Lys Asp 290 295 300
  • Leu Glu Thr Gin lie Ser Ser Leu Asn Glu Lys Leu Ala Asn Leu Asn 500 505 510
  • Glu lie Ser Ala Lys Asp Glu Lys Glu Leu Leu His Phe Ser lie Glu 530 535 540
  • Gin Glu lie Lys Asp Gin Lys Glu Arg Cys Asp Lys Ser Leu Thr Thr 545 550 555 560 lie Thr Glu Leu Gin Arg Arg lie Gin Glu Ser Ala Lys Gin lie Glu 565 570 575
  • Ala Lys Asp Asn Lys lie Thr Glu Leu Leu Asn Asp Val Glu Arg Leu 580 585 590
  • ATCTAGCCCA CTTAATAAAA CCAGAGATCC TATGGGAAAT TTAGCCTAAG ACAGTGCTGG 420
  • AAATTGCCAT ATGTTGATAC AAAGAAGTGT TTGGCCACAT TACAGGTCTC AGACTCAACT 480
  • GCAAACCAGT AACCTATGCT GGTSGTAACA GAGGATCCTA CAATTACGTT TGTTTTTAAG 840
  • MOLECULE TYPE cDNA
  • ACATGTACAG GCCCTGAATC CAGGCGAGAA GTTCCCATGT GTTCAGACCC TGAACCCAGG 1320
  • AAAGTTAGCC GGACATGGTG GCAGGTGCCT GTAGTCCCAG CTACTTGGGA GGCTGGGGCA 1800
  • MOLECULE TYPE protein

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Abstract

Polynucleotides and the proteins encoded thereby are disclosed.

Description

SECRETED PROTEINS AND POLYNUCLEOTIDES ENCODING THEM
This application is a continuation-in-part of Ser. No. 60/XXX,XXX (converted to a provisional application from non-provisional application Ser. No. 08/845,296), filed April 25, 1997, which is incorporated by reference herein.
FIELD OF THE INVENTION The present invention provides novel polynucleotides and proteins encoded by such polynucleotides, along with therapeutic, diagnostic and research utilities for these polynucleotides and proteins.
BACKGROUND OF THE INVENTION Technology aimed at the discovery of protein factors (including e.g., cytokines, such as lymphokines, interferons, CSFs and interleukins) has matured rapidly over the past decade. The now routine hybridization cloning and expression cloning techniques clone novel polynucleotides "directly" in the sense that they rely on information directly related to the discovered protein (i.e., partial DNA/amino acid sequence of the protein in the case of hybridization cloning; activity of the protein in the case of expression cloning). More recent "indirect" cloning techniques such as signal sequence cloning, which isolates DNA sequences based on the presence of a now well-recognized secretory leader sequence motif, as well as various PCR-based or low stringency hybridization cloning techniques, have advanced the state of the art by making available large numbers of DNA/amino acid sequences for proteins that are known to have biological activity by virtue of their secreted nature in the case of leader sequence cloning, or by virtue of the cell or tissue source in the case of PCR-based techniques. It is to these proteins and the polynucleotides encoding them that the present invention is directed. SUMMARY OF THE INVENTION In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:l;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 99 to nucleotide 902;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 162 to nucleotide 902;
(d) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 87 to nucleotide 219;
(e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415;
(f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415;
(g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415;
(i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:2; (j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:2 having biological activity, the fragment comprising the amino acid sequence from amino acid 129 to amino acid 138 of SEQ ID NO:2;
(k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j). Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID NO:l from nucleotide 99 to nucleotide 902; the nucleotide sequence of SEQ ID NO:l from nucleotide 162 to nucleotide 902; the nucleotide sequence of SEQ ID NO:l from nucleotide 87 to nucleotide 219; the nucleotide sequence of the full-length protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415. Other embodiments provide the gene corresponding to the cDNA sequence of SEQ
ID NO:l.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO:2;
(b) fragments of the amino acid sequence of SEQ ID NO:2 comprising the amino acid sequence from amino acid 129 to amino acid 138 of SEQ ID NO:2; and
(c) the amino acid sequence encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO:2.
In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of: (a) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:3;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:3 from nucleotide 283 to nucleotide 1158;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:3 from nucleotide 1 to nucleotide 789;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone da228_6 deposited under accession number ATCC 98415; (e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone da228_6 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:4; (i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:4 having biological activity, the fragment comprising the amino acid sequence from amino acid 141 to amino acid 150 of SEQ ID NO:4;
(j) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i). Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID
NO:3 from nucleotide 283 to nucleotide 1158; the nucleotide sequence of SEQ ID NO:3 from nucleotide 1 to nucleotide 789; the nucleotide sequence of the full-length protein coding sequence of clone da228_6 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone da228_6 deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169. Other embodiments provide the gene corresponding to the cDNA sequence of SEQ
ID NO:3.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO:4;
(b) the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169;
(c) fragments of the amino acid sequence of SEQ ID NO:4 comprising the amino acid sequence from amino acid 141 to amino acid 150 of SEQ ID NO:4; and
(d) the amino acid sequence encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO:4 or the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169.
In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5 from nucleotide 152 to nucleotide 2182;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5 from nucleotide 2 to nucleotide 931; (d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone du410_5 deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415; (f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone du410_5 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415; (h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:6;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:6 having biological activity, the fragment comprising the amino acid sequence from amino acid 333 to amino acid 342 of SEQ ID NO:6;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above; (k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID NO:5 from nucleotide 152 to nucleotide 2182; the nucleotide sequence of SEQ ID NO:5 from nucleotide 2 to nucleotide 931; the nucleotide sequence of the full-length protein coding sequence of clone du410_5 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone du410_5 deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:6 from amino acid 1 to amino acid 260.
Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO-.5.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:6; (b) the amino acid sequence of SEQ ID NO:6 from amino acid 1 to amino acid 260;
(c) fragments of the amino acid sequence of SEQ ID NO:6 comprising the amino acid sequence from amino acid 333 to amino acid 342 of SEQ ID NO:6; and (d) the amino acid sequence encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO:6 or the amino acid sequence of SEQ ID NO:6 from amino acid 1 to amino acid 260. In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:7; (b) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:7 from nucleotide 51 to nucleotide 611;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:7 from nucleotide 1 to nucleotide 525;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone eh80_l deposited under accession number
ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone eh80_l deposited under accession number ATCC
98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:8;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:8 having biological activity, the fragment comprising the amino acid sequence from amino acid 88 to amino acid 97 of SEQ ID NO:8; (j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID NO:7 from nucleotide 51 to nucleotide 611; the nucleotide sequence of SEQ ID NO:7 from nucleotide 1 to nucleotide 525; the nucleotide sequence of the full-length protein coding sequence of clone eh80_l deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone eh80_l deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158.
Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:7.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:8;
(b) the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158; (c) fragments of the amino acid sequence of SEQ ID NO:8 comprising the amino acid sequence from amino acid 88 to amino acid 97 of SEQ ID NO:8; and
(d) the amino acid sequence encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO:8 or the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158.
In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9 from nucleotide 431 to nucleotide 559;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9 from nucleotide 518 to nucleotide 559; (d) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:9 from nucleotide 190 to nucleotide 547;
(e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone er369_l deposited under accession number ATCC 98415; (f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415;
(g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone er369_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415;
(i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:10; (j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:10 having biological activity, the fragment comprising the amino acid sequence from amino acid 16 to amino acid 25 of SEQ ID NO:10;
(k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j). Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID
NO:9 from nucleotide 431 to nucleotide 559; the nucleotide sequence of SEQ ID NO:9 from nucleotide 518 to nucleotide 559; the nucleotide sequence of SEQ ID NO:9 from nucleotide 190 to nucleotide 547; the nucleotide sequence of the full-length protein coding sequence of clone er369_l deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone er369_l deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:10 from amino acid 1 to amino acid
39.
Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:9. In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 10; (b) the amino acid sequence of SEQ ID NO: 10 from amino acid 1 to amino acid 39;
(c) fragments of the amino acid sequence of SEQ ID NO:10 comprising the amino acid sequence from amino acid 16 to amino acid 25 of SEQ ID NO:10; and (d) the amino acid sequence encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO: 10 or the amino acid sequence of SEQ ID NO: 10 from amino acid 1 to amino acid 39. In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO-11;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 11 from nucleotide 91 to nucleotide 2838;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO-11 from nucleotide 2209 to nucleotide 2838;
(d) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:ll from nucleotide 839 to nucleotide 1197; (e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415;
(f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415; (g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415; (i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:12;
(j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:12 having biological activity, the fragment comprising the amino acid sequence from amino acid 453 to amino acid 462 of
SEQ ID NO:12;
(k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID NO:ll from nucleotide 91 to nucleotide 2838; the nucleotide sequence of SEQ ID NO:ll from nucleotide 2209 to nucleotide 2838; the nucleotide sequence of SEQ ID NO: 11 from nucleotide 839 to nucleotide 1197; the nucleotide sequence of the full-length protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369. Other embodiments provide the gene corresponding to the cDNA sequence of SEQ
ID NO:ll.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of: (a) the amino acid sequence of SEQ ID NO: 12;
(b) the amino acid sequence of SEQ ID NO: 12 from amino acid 251 to amino acid 369; (c) fragments of the amino acid sequence of SEQ ID NO:12 comprising the amino acid sequence from amino acid 453 to amino acid 462 of SEQ ID NO:12; and
(d) the amino acid sequence encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO:12 or the amino acid sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369.
In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:13;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:13 from nucleotide 568 to nucleotide 978; (c) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:13 from nucleotide 1084 to nucleotide 1854;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fm60_l deposited under accession number ATCC 98415; (e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fm60_l deposited under accession number ATCC 98415; (g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO: 14;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO: 14 having biological activity, the fragment comprising the amino acid sequence from amino acid 63 to amino acid 72 of SEQ ID NO:14;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above; (k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i). Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID
NO:13 from nucleotide 568 to nucleotide 978; the nucleotide sequence of SEQ ID NO:13 from nucleotide 1084 to nucleotide 1854; the nucleotide sequence of the full-length protein coding sequence of clone fm60_l deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone fm60_l deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415.
Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:13. In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 14;
(b) fragments of the amino acid sequence of SEQ ID NO: 14 comprising the amino acid sequence from amino acid 63 to amino acid 72 of SEQ ID NO:14; and
(c) the amino acid sequence encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO: 14.
In one embodiment, the present invention provides a composition comprising an isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:15; (b) a polynucleotide comprising the nucleotide sequence of SEQ ID
NO:15 from nucleotide 16 to nucleotide 309;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 15 from nucleotide 127 to nucleotide 309; (d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:16;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO: 16 having biological activity, the fragment comprising the amino acid sequence from amino acid 44 to amino acid 53 of SEQ
ID NO:16;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
Preferably, such polynucleotide comprises the nucleotide sequence of SEQ ID NO:15 from nucleotide 16 to nucleotide 309; the nucleotide sequence of SEQ ID NO:15 from nucleotide 127 to nucleotide 309; the nucleotide sequence of the full-length protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415; or the nucleotide sequence of a mature protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415. In other preferred embodiments, the polynucleotide encodes the full-length or a mature protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415. In yet other preferred embodiments, the present invention provides a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58. Other embodiments provide the gene corresponding to the cDNA sequence of SEQ ID NO:15.
In other embodiments, the present invention provides a composition comprising a protein, wherein said protein comprises an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 16;
(b) the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58;
(c) fragments of the amino acid sequence of SEQ ID NO: 16 comprising the amino acid sequence from amino acid 44 to amino acid 53 of SEQ ID NO: 16; and
(d) the amino acid sequence encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins. Preferably such protein comprises the amino acid sequence of SEQ ID NO: 16 or the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58.
In certain preferred embodiments, the polynucleotide is operably linked to an expression control sequence. The invention also provides a host cell, including bacterial, yeast, insect and mammalian cells, transformed with such polynucleotide compositions. Also provided by the present invention are organisms that have enhanced, reduced, or modified expression of the gene(s) corresponding to the polynucleotide sequences disclosed herein.
Processes are also provided for producing a protein, which comprise:
(a) growing a culture of the host cell transformed with such polynucleotide compositions in a suitable culture medium; and
(b) purifying the protein from the culture.
The protein produced according to such methods is also provided by the present invention. Preferred embodiments include those in which the protein produced by such process is a mature form of the protein. Protein compositions of the present invention may further comprise a pharmaceutically acceptable carrier. Compositions comprising an antibody which specifically reacts with such protein are also provided by the present invention.
Methods are also provided for preventing, treating or ameliorating a medical condition which comprises administering to a mammalian subject a therapeutically effective amount of a composition comprising a protein of the present invention and a pharmaceutically acceptable carrier.
BRIEF DESCRIPTION OF THE DRAWINGS Figures 1A and IB are schematic representations of the pED6 and pNOTs vectors, respectively, used for deposit of clones disclosed herein.
DETAILED DESCRIPTION ISOLATED PROTEINS AND POLYNUCLEOTIDES Nucleotide and amino acid sequences, as presently determined, are reported below for each clone and protein disclosed in the present application. The nucleotide sequence of each clone can readily be determined by sequencing of the deposited clone in accordance with known methods. The predicted amino acid sequence (both full-length and mature forms) can then be determined from such nucleotide sequence. The amino acid sequence of the protein encoded by a particular clone can also be determined by expression of the clone in a suitable host cell, collecting the protein and determining its sequence. For each disclosed protein applicants have identified what they have determined to be the reading frame best identifiable with sequence information available at the time of filing. As used herein a "secreted" protein is one which, when expressed in a suitable host cell, is transported across or through a membrane, including transport as a result of signal sequences in its amino acid sequence. "Secreted" proteins include without limitation proteins secreted wholly (e.g., soluble proteins) or partially (e.g. , receptors) from the cell in which they are expressed. "Secreted" proteins also include without limitation proteins which are transported across the membrane of the endoplasmic reticulum.
Clone "ci25 4"
A polynucleotide of the present invention has been identified as clone "ci25_4". ci25_4 was isolated from a human adult brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. ci25_4 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "ci25_4 protein"). The nucleotide sequence of ci25_4 as presently determined is reported in SEQ ID NO:l. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the ci25_4 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:2. Amino acids 9 to 21 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 22, or are a transmembrane domain.
The EcoRI/NotI restriction fragment obtainable from the deposit containing clone ci25_4 should be approximately 1700 bp.
The nucleotide sequence disclosed herein for ci25_4 was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. ci25_4 demonstrated at least some similarity with sequences identified as AA243050 (zr24h03.rl Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone 664373 5'), AA316800 (EST188485 HCC cell line (matastasis to liver in mouse) II Homo sapiens cDNA 5' end), AA340783 (EST46083 Fetal kidney II Homo sapiens cDNA 5' end), Q05686 (Islets of Langerhans cell clone ICA12.3 (ATCC 40703)), R12690 (yf40e07.sl Homo sapiens cDNA clone 129348 3'), R16432 (yf40e07.rl Homo sapiens cDNA clone), W81653 (zd84dl2.rl Soares fetal heart NbHH19W Homo sapiens cDNA clone 347351 5'), and W81654 (zd84dl2.sl Soares fetal heart NbHH19W Homo sapiens cDNA clone 347351 3'). Based upon sequence similarity, ci25_4 proteins and each similar protein or peptide may share at least some activity. The TopPredll computer program predicts five additional potential transmembrane domains within the ci25_4 protein sequence, centered around amino acids 81, 134, 159, 182, and 241 of SEQ ID NO:2, respectively.
Clone "da228 6"
A polynucleotide of the present invention has been identified as clone "da228_6". da228_6 was isolated from a human adult placenta cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. da228_6 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "da228_6 protein").
The nucleotide sequence of da228_6 as presently determined is reported in SEQ ID NO:3. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the da228_6 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:4.
The EcoRI/NotI restriction fragment obtainable from the deposit containing clone da228_6 should be approximately 1500 bp. The nucleotide sequence disclosed herein for da228_6 was searched against the
GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. da228_6 demonstrated at least some similarity with sequences identified as W57906 (zdl7fll.rl Soares fetal heart NbHH19W Homo sapiens cDNA clone 340941 5') and W57907 (zdl7fll.sl Soares fetal heart NbHH19W Homo sapiens cDNA clone 340941 3M Based upon sequence similarity, da228_6 proteins and each similar protein or peptide may share at least some activity.
Clone "du410 5"
A polynucleotide of the present invention has been identified as clone "du410_5". du410_5 was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. du410_5 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "du410_5 protein").
The nucleotide sequence of du410_5 as presently determined is reported in SEQ ID NO:5. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the du410_5 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:6. The EcoRI/NotI restriction fragment obtainable from the deposit containing clone du410_5 should be approximately 2400 bp.
The nucleotide sequence disclosed herein for du410_5 was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. du410_5 demonstrated at least some similarity with sequences identified as N44315 (EST51pl9 WATMl Homo sapiens cDNA clone 51pl9) and N66980
(yz58d04.sl Homo sapiens cDNA clone 287239 3'). The predicted amino acid sequence disclosed herein for du410_5 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol. The predicted du410_5 protein demonstrated at least some similarity to sequences identified as U67604 (PI 15 protein [Methanococcus jannaschii]). Based upon sequence similarity, du410_5 proteins and each similar protein or peptide may share at least some activity.
Clone "eh80 1" A polynucleotide of the present invention has been identified as clone "eh80_l". eh80_l was isolated from a human adult blood (peripheral blood mononuclear cells treated with granulocyte-colony stimulating factor in vivo) cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. eh80_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "eh80_l protein").
The nucleotide sequence of eh80_l as presently determined is reported in SEQ ID NO:7. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the eh80_l protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:8. Another potential eh80_l reading frame and predicted amino acid sequence is encoded by basepairs 41 to 1659 of SEQ ID NO:7 and is reported in SEQ ID NO:25. A frameshift in the nucleotide sequence of SEQ ID NO:5 between about nucleotide 41 to about nucleotide 614 could join together portions of the overlapping reading frames of SEQ ID NO:8 and SEQ ID NO:25.
The EcoRI/NotI restriction fragment obtainable from the deposit containing clone eh80_l should be approximately 2000 bp.
The nucleotide sequence disclosed herein for eh80_l was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. eh80_l demonstrated at least some similarity with sequences identified as AA012957 (ze27b03.rl Soares retina N2b4HR Homo sapiens cDNA clone 360173 5'), AA019878 (ze63b03.sl Soares retina N2b4HR Homo sapiens cDNA clone 363629 3'), AA505456 (nh84c07.sl NCI_CGAP_Brl.l Homo sapiens cDNA clone IMAGE 965196), Q60246 (Human brain Expressed Sequence Tag EST02242), R16603 (yf43c04.rl Homo sapiens cDNA clone 1296065'), and T85469 (yd82f05.rl Homo sapiens cDNA clone
114753 5'). The predicted amino acid sequence disclosed herein for eh80_l was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol. The predicted eh80_l protein demonstrated at least some similarity to sequences identified as U40747 (FBP 11 [Mus musculus]). Based upon sequence similarity, eh80_l proteins and each similar protein or peptide may share at least some activity. The TopPredll computer program predicts two potential transmembrane domains within the amino acid sequence of SEQ ID NO:8, one centered around amino acid 107 and another around amino acid 131.
Clone "er369 1"
A polynucleotide of the present invention has been identified as clone "er369_l". er369_l was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. er369_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "er369_l protein").
The nucleotide sequence of er369_l as presently determined is reported in SEQ ID NO:9. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the er369_l protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:10. Amino acids 17 to 29 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 30, or are a transmembrane domain. The EcoRI/NotI restriction fragment obtainable from the deposit containing clone er369_l should be approximately 1500 bp.
The nucleotide sequence disclosed herein for er369_l was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. er369_l demonstrated at least some similarity with sequences identified as H12227 (yml2gl0.rl Homo sapiens cDNA clone 47729 5'), H70978 (yr73g06.rl Homo sapiens cDNA clone 210970 5'), M79179 (EST01327 Homo sapiens cDNA clone HHCPOδl), Q61324 (Human brain Expressed Sequence Tag EST01327), and R53554 (yg84e04.sl Homo sapiens cDNA clone 398543' similar to contains Alu repetitive element). Based upon sequence similarity, er369_l proteins and each similar protein or peptide may share at least some activity. The nucleotide sequence of er369_l indicates that it may contain an Alu repetitive element. Clone "fh!23 5"
A polynucleotide of the present invention has been identified as clone "fhl23_5". fhl23_5 was isolated from a human fetal brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. fhl23_5 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fhl23_5 protein").
The nucleotide sequence of fhl23_5 as presently determined is reported in SEQ ID NO:ll. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the fhl23_5 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:12. Amino acids 694 to 706 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 707, or are a transmembrane domain. The EcoRI/NotI restriction fragment obtainable from the deposit containing clone fhl23_5 should be approximately 2800 bp.
The nucleotide sequence disclosed herein for fhl23_5 was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. fhl23_5 demonstrated at least some similarity with sequences identified as AA815253 (ai64d02.sl Soares testis NHT Homo sapiens cDNA clone 1375587 3'), AA855689 (vw71h04.rl Stratagene mouse heart (#937316) Mus musculus cDNA clone 12604395'), and W80785 (zd83d07.sl Soares fetal heart NbHH19W Homo sapiens cDNA clone 347245 3). The predicted amino acid sequence disclosed herein for fhl23_5 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol. The predicted fhl23_5 protein demonstrated at least some similarity to sequences identified as D80005 (KIAA0183 [Homo sapiens]). Based upon sequence similarity, fhl23_5 proteins and each similar protein or peptide may share at least some activity. The TopPredll computer program predicts five additional possible transmembrane domains within the fhl23_5 protein sequence.
Clone "fm60 1"
A polynucleotide of the present invention has been identified as clone "fm60_l". fm60_l was isolated from a human adult brain cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. fm60_l is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fm60_l protein"). The nucleotide sequence of fm60_l as presently determined is reported in SEQ ID
NO:13. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the fm60_l protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:14.
The EcoRI/NotI restriction fragment obtainable from the deposit containing clone fm60_l should be approximately 2200 bp.
The nucleotide sequence disclosed herein for fm60_l was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. fm60_l demonstrated at least some similarity with sequences identified as AA155574 (zo70a01.sl Stratagene pancreas (#937208) Homo sapiens cDNA clone 592200 3'), AF015147 (Homo sapiens clone HS19.1 Alu-Ya5 sequence), N86095 (J6377F Fetal heart, Lambda ZAP Express Homo sapiens cDNA clone J63775' similar to REPETITIVE ELEMENT ALU), U14567 (***ALU WARNING Human Alu-J subfamily consensus sequence), and Z82199 (Human DNA sequence from clone J316D5). Based upon sequence similarity, fm60_l proteins and each similar protein or peptide may share at least some activity. The TopPredll computer program predicts a potential transmembrane domain within the fm60_l protein sequence centered around amino acid 50 of SEQ ID NO:14. The nucleotide sequence of fm60_l indicates that it may contain one or more of the following repetitive elements: Alu, LI.
Clone "fr473 2"
A polynucleotide of the present invention has been identified as clone "fr473_2". fr473_2 was isolated from a human adult placenta cDNA library using methods which are selective for cDNAs encoding secreted proteins (see U.S. Pat. No. 5,536,637), or was identified as encoding a secreted or transmembrane protein on the basis of computer analysis of the amino acid sequence of the encoded protein. fr473_2 is a full-length clone, including the entire coding sequence of a secreted protein (also referred to herein as "fr473_2 protein").
The nucleotide sequence of fr473_2 as presently determined is reported in SEQ ID NO:15. What applicants presently believe to be the proper reading frame and the predicted amino acid sequence of the fr473_2 protein corresponding to the foregoing nucleotide sequence is reported in SEQ ID NO:16. Amino acids 25 to 37 are a predicted leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 38, or are a transmembrane domain. Amino acids 62 to 74 are another possible leader/signal sequence, with the predicted mature amino acid sequence beginning at amino acid 75, or are a transmembrane domain.
The EcoRI/NotI restriction fragment obtainable from the deposit containing clone fr473_2 should be approximately 605 bp.
The nucleotide sequence disclosed herein for fr473_2 was searched against the GenBank and GeneSeq nucleotide sequence databases using BLASTN/BLASTX and FASTA search protocols. fr473_2 demonstrated at least some similarity with sequences identified as AA479559 (zu42a02.rl Soares ovary tumor NbHOT Homo sapiens cDNA clone 740618 5' similar to WP:F49C12.12 CE03372), H46855 (yol8g04.rl Homo sapiens cDNA clone 178326 5'), T24372 (Human gene signature HUMGS06404), W31692 (zb93d01.rl Soares parathyroid tumor NbHPA Homo sapiens cDNA clone 320353 5'), and Z32877 (H. sapiens partial cDNA sequence; clone HEA41P; single read). The predicted amino acid sequence disclosed herein for fr473_2 was searched against the GenPept and GeneSeq amino acid sequence databases using the BLASTX search protocol. The predicted fr473_2 protein demonstrated at least some similarity to sequences identified as Z68227 (F49C12.12 [Caenorhabditis elegans]). Based upon sequence similarity, fr473_2 proteins and each similar protein or peptide may share at least some activity.
Deposit of Clones
Clones ci25_4, da228_6, du410_5, eh80_l, er369_l, fhl23_5, fm60_l, and fr473_2 were deposited on April 25, 1997 with the American Type Culture Collection (10801
University Boulevard, Manassas, Virginia 20110-2209 U.S.A.) as an original deposit under the Budapest Treaty and were given the accession number ATCC 98415, from which each clone comprising a particular polynucleotide is obtainable. All restrictions on the availability to the public of the deposited material will be irrevocably removed upon the granting of the patent, except for the requirements specified in 37 C.F.R. § 1.808(b), and the term of the deposit will comply with 37 C.F.R. § 1.806.
Each clone has been transfected into separate bacterial cells (E. coli) in this composite deposit. Each clone can be removed from the vector in which it was deposited by performing an EcoRI/NotI digestion (5' site, EcoRI; 3' site, NotI) to produce the appropriate fragment for such clone. Each clone was deposited in either the pED6 or pNOTs vector depicted in Figures 1A and IB, respectively. The pED6dpc2 vector ("pED6") was derived from pEDόdpcl by insertion of a new polylinker to facilitate cDNA cloning (Kaufman et al, 1991, Nucleic Acids Res. 19: 4485-4490); the pNOTs vector was derived from pMT2 (Kaufman et al, 1989, Mol. Cell Biol. 9: 946-958) by deletion of the DHFR sequences, insertion of a new polylinker, and insertion of the M13 origin of replication in the Clal site. In some instances, the deposited clone can become "flipped" (i.e., in the reverse orientation) in the deposited isolate. In such instances, the cDNA insert can still be isolated by digestion with EcoRI and Notl. However, NotI will then produce the 5' site and EcoRI will produce the 3' site for placement of the cDNA in proper orientation for expression in a suitable vector. The cDNA may also be expressed from the vectors in which they were deposited.
Bacterial cells containing a particular clone can be obtained from the composite deposit as follows:
An oligonucleotide probe or probes should be designed to the sequence that is known for that particular clone. This sequence can be derived from the sequences provided herein, or from a combination of those sequences. The sequence of an oligonucleotide probe that was used to isolate or to sequence each full-length clone is identified below, and should be most reliable in isolating the clone of interest.
Clone Probe Sequence ci25_4 SEQ ID NO:17 da228_6 SEQ ID NO:18 du410_5 SEQ ID NO:19 eh80_l SEQ ID NO:20 er369_l SEQ ID NO:21 fhl23_5 SEQ ID NO:22 fm60_l SEQ ID NO:23 fr473_2 SEQ ID NO:24
In the sequences listed above which include an N at position 2, that position is occupied in preferred probes/primers by a biotinylated phosphoaramidite residue rather than a nucleotide (such as , for example, that produced by use of biotin phosphoramidite (1- dimethoxytrityloxy-2-(N-biotinyl-4-aminobutyl)-propyl-3-0-(2-cyanoethyl)-(N,N- diisopropyl)-phosphoramadite) (Glen Research, cat. no. 10-1953)).
The design of the oligonucleotide probe should preferably follow these parameters: (a) It should be designed to an area of the sequence which has the fewest ambiguous bases ("N's"), if any; (b) It should be designed to have a Tm of approx. 80 ° C (assuming 2° for each A or T and 4 degrees for each G or C). The oligonucleotide should preferably be labeled with g-32P ATP (specific activity 6000 Ci/mmole) and T4 polynucleotide kinase using commonly employed techniques for labeling oligonucleotides. Other labeling techniques can also be used. Unincorporated label should preferably be removed by gel filtration chromatography or other established methods. The amount of radioactivity incorporated into the probe should be quantitated by measurement in a scintillation counter. Preferably, specific activity of the resulting probe should be approximately 4e+6 dpm/pmole.
The bacterial culture containing the pool of full-length clones should preferably be thawed and 100 μl of the stock used to inoculate a sterile culture flask containing 25 ml of sterile L-broth containing ampicillin at 100 μg/ml. The culture should preferably be grown to saturation at 37°C, and the saturated culture should preferably be diluted in fresh L-broth. Aliquots of these dilutions should preferably be plated to determine the dilution and volume which will yield approximately 5000 distinct and well-separated colonies on solid bacteriological media containing L-broth containing ampicillin at 100 μg/ml and agar at 1.5% in a 150 mm petri dish when grown overnight at 37°C. Other known methods of obtaining distinct, well-separated colonies can also be employed. Standard colony hybridization procedures should then be used to transfer the colonies to nitrocellulose filters and lyse, denature and bake them.
The filter is then preferably incubated at 65°C for 1 hour with gentle agitation in 6X SSC (20X stock is 175.3 g NaCl/liter, 88.2 g Na citrate /liter, adjusted to pH 7.0 with NaOH) containing 0.5% SDS, 100 μg/ml of yeast RNA, and 10 mM EDTA (approximately 10 mL per 150 mm filter). Preferably, the probe is then added to the hybridization mix at a concentration greater than or equal to le+6 dpm/mL. The filter is then preferably incubated at 65°C with gentle agitation overnight. The filter is then preferably washed in 500 mL of 2X SSC/0.5% SDS at room temperature without agitation, preferably followed by 500 mL of 2X SSC/0.1% SDS at room temperature with gentle shaking for 15 minutes. A third wash with 0.1X SSC/0.5% SDS at 65°C for 30 minutes to 1 hour is optional. The filter is then preferably dried and subjected to autoradiography for sufficient time to visualize the positives on the X-ray film. Other known hybridization methods can also be employed. The positive colonies are picked, grown in culture, and plasmid DNA isolated using standard procedures. The clones can then be verified by restriction analysis, hybridization analysis, or DNA sequencing.
Fragments of the proteins of the present invention which are capable of exhibiting biological activity are also encompassed by the present invention. Fragments of the protein may be in linear form or they may be cyclized using known methods, for example, as described in H.U. Saragovi, et al, Bio /Technology 10, 773-778 (1992) and in R.S. McDowell, et al, J. Amer. Chem. Soc. 114, 9245-9253 (1992), both of which are incorporated herein by reference. Such fragments may be fused to carrier molecules such as immunoglobulins for many purposes, including increasing the valency of protein binding sites. For example, fragments of the protein may be fused through "linker" sequences to the Fc portion of an immunoglobulin. For a bivalent form of the protein, such a fusion could be to the Fc portion of an IgG molecule. Other immunoglobulin isotypes may also be used to generate such fusions. For example, a protein - IgM fusion would generate a decavalent form of the protein of the invention. The present invention also provides both full-length and mature forms of the disclosed proteins. The full-length form of the such proteins is identified in the sequence listing by translation of the nucleotide sequence of each disclosed clone. The mature form(s) of such protein may be obtained by expression of the disclosed full-length polynucleotide (preferably those deposited with ATCC) in a suitable mammalian cell or other host cell. The sequence(s) of the mature form(s) of the protein may also be determinable from the amino acid sequence of the full-length form.
The present invention also provides genes corresponding to the polynucleotide sequences disclosed herein. "Corresponding genes" are the regions of the genome that are transcribed to produce the mRNAs from which cDNA polynucleotide sequences are derived and may include contiguous regions of the genome necessary for the regulated expression of such genes. Corresponding genes may therefore include but are not limited to coding sequences, 5' and 3' untranslated regions, alternatively spliced exons, introns, promoters, enhancers, and silencer or suppressor elements. The corresponding genes can be isolated in accordance with known methods using the sequence information disclosed herein. Such methods include the preparation of probes or primers from the disclosed sequence information for identification and /or amplification of genes in appropriate genomic libraries or other sources of genomic materials. An "isolated gene" is a gene that has been separated from the adjacent coding sequences, if any, present in the genome of the organism from which the gene was isolated.
Organisms that have enhanced, reduced, or modified expression of the gene(s) corresponding to the polynucleotide sequences disclosed herein are provided. The desired change in gene expression can be achieved through the use of antisense polynucleotides or ribozymes that bind and/or cleave the mRNA transcribed from the gene (Albert and Morris, 1994, Trends Pharmacol. Sci. 15(7): 250-254; Lavarosky et al, 1997, Biochem. Mol. Med. 62(1): 11-22; and Hampel, 1998, Prog. Nucleic Acid Res. Mol. Biol 58: 1- 39; all of which are incorporated by reference herein). Transgenic animals that have multiple copies of the gene(s) corresponding to the polynucleotide sequences disclosed herein, preferably produced by transformation of cells with genetic constructs that are stably maintained within the transformed cells and their progeny, are provided. Transgenic animals that have modified genetic control regions that increase or reduce gene expression levels, or that change temporal or spatial patterns of gene expression, are also provided (see European Patent No. 0 649 464 Bl, incorporated by reference herein). In addition, organisms are provided in which the gene(s) corresponding to the polynucleotide sequences disclosed herein have been partially or completely inactivated, through insertion of extraneous sequences into the corresponding gene(s) or through deletion of all or part of the corresponding gene(s). Partial or complete gene inactivation can be accomplished through insertion, preferably followed by imprecise excision, of transposable elements (Plasterk, 1992, Bioessays 14(9): 629-633; Zwaal et al, 1993, Proc. Natl Acad. Sci. USA 90(16): 7431-7435; Clark et al, 1994, Proc. Natl. Acad. Sci. USA 91(2): 719-722; all of which are incorporated by reference herein), or through homologous recombination, preferably detected by positive/negative genetic selection strategies (Mansour et al, 1988, Nature 336: 348-352; U.S. Patent Nos. 5,464,764; 5,487,992; 5,627,059; 5,631,153; 5,614, 396; 5,616,491; and 5,679,523; all of which are incorporated by reference herein). These organisms with altered gene expression are preferably eukaryotes and more preferably are mammals. Such organisms are useful for the development of non-human models for the study of disorders involving the corresponding gene(s), and for the development of assay systems for the identification of molecules that interact with the protein product(s) of the corresponding gene(s). Where the protein of the present invention is membrane-bound (e.g., is a receptor), the present invention also provides for soluble forms of such protein. In such forms part or all of the intracellular and transmembrane domains of the protein are deleted such that the protein is fully secreted from the cell in which it is expressed. The intracellular and transmembrane domains of proteins of the invention can be identified in accordance with known techniques for determination of such domains from sequence information.
Proteins and protein fragments of the present invention include proteins with amino acid sequence lengths that are at least 25%(more preferably at least 50%, and most preferably at least 75%) of the length of a disclosed protein and have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% or 95% identity) with that disclosed protein, where sequence identity is determined by comparing the amino acid sequences of the proteins when aligned so as to maximize overlap and identity while minimizing sequence gaps. Also included in the present invention are proteins and protein fragments that contain a segment preferably comprising 8 or more (more preferably 20 or more, most preferably 30 or more) contiguous amino acids that shares at least 75% sequence identity (more preferably, at least 85% identity; most preferably at least 95% identity) with any such segment of any of the disclosed proteins.
Species homologues of the disclosed polynucleotides and proteins are also provided by the present invention. As used herein, a "species homologue" is a protein or polynucleotide with a different species of origin from that of a given protein or polynucleotide, but with significant sequence similarity to the given protein or polynucleotide. Preferably, polynucleotide species homologues have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% identity) with the given polynucleotide, and protein species homologues have at least 30% sequence identity (more preferably, at least 45% identity; most preferably at least 60% identity) with the given protein, where sequence identity is determined by comparing the nucleotide sequences of the polynucleotides or the amino acid sequences of the proteins when aligned so as to maximize overlap and identity while minimizing sequence gaps. Species homologues may be isolated and identified by making suitable probes or primers from the sequences provided herein and screening a suitable nucleic acid source from the desired species. Preferably, species homologues are those isolated from mammalian species. Most preferably, species homologues are those isolated from certain mammalian species such as, for example, Pan troglodytes, Gorilla gorilla, Pongo pygmaeus, Hylobates co color, Macaca mulatta, Papio papio, Papio hamadryas, Cercopithecus aethiops, Cebus capucinus, Aotus trivirgatus, Sanguinus oedipus, Microcebus murinus, Mus musculns, Rattus norvegicus, Cricetulus griseus, Felts catus, Mustela vison, Canis famϊliaris, Oryctolagiis cuniculus, Bos taurus, Ovis aries, Sus scrofa, and Equus caballus, for which genetic maps have been created allowing the identification of syntenic relationships between the genomic organization of genes in one species and the genomic organization of the related genes in another species (O'Brien and Seuanez, 1988, Ann. Rev. Genet. 22: 323-351; O'Brien et al, 1993, Nature Genetics 3:103-112; Johansson et al, 1995, Genomics 25: 682-690; Lyons et al, 1997, Nature Genetics 15: 47-56; O'Brien et al, 1997, Trends in Genetics 13(10): 393-399; Carver and Stubbs, 1997, Genome Research 7:1123-1137; all of which are incorporated by reference herein).
The invention also encompasses allelic variants of the disclosed polynucleotides or proteins; that is, naturally-occurring alternative forms of the isolated polynucleotides which also encode proteins which are identical or have significantly similar sequences to those encoded by the disclosed polynucleotides. Preferably, allelic variants have at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% identity) with the given polynucleotide, where sequence identity is determined by comparing the nucleotide sequences of the polynucleotides when aligned so as to maximize overlap and identity while minimizing sequence gaps. Allelic variants may be isolated and identified by making suitable probes or primers from the sequences provided herein and screening a suitable nucleic acid source from individuals of the appropriate species.
The invention also includes polynucleotides with sequences complementary to those of the polynucleotides disclosed herein.
The present invention also includes polynucleotides that hybridize under reduced stringency conditions, more preferably stringent conditions, and most preferably highly stringent conditions, to polynucleotides described herein. Examples of stringency conditions are shown in the table below: highly stringent conditions are those that are at least as stringent as, for example, conditions A-F; stringent conditions are at least as stringent as, for example, conditions G-L; and reduced stringency conditions are at least as stringent as, for example, conditions M-R.
Figure imgf000032_0001
* The hybrid length is that anticipated for the hybridized regιon(s) of the hybridizing polynucleotides When hybridizing a polynucleotide to a target polynucleotide of unknown sequence, the hybrid length is assumed to be that of the hybridizing polynucleotide When polynucleotides of known sequence are hybridized, the hybrid length can be determined by aligning the sequences of the polynucleotides and identifying the region or regions of optimal sequence complementarity
* SSPE (lxSSPE is 0 15M NaCl, lOmM NaH2P04, and 1 25mM EDTA, pH 74) can be substituted for SSC (lxSSC is 0 15M NaCl and 15mM sodium citrate) in the hybridization and wash buffers, washes are performed for 15 minutes after hybridization is complete
*TB - TR The hybridization temperature for hybrids anticipated to be less than 50 base pairs in length should be 5-10°C less than the melting temperature (Tm) of the hybrid, where Tm is determined according to the following equations For hybrids less than 18 base pairs in length, Tm(°C) = 2(# of A + T bases) + 4(# of G + C bases) For hybrids between 18 and 49 base pairs in length, Tm(°C) = 81 5 + 16 6(log]0[Na+]) + 041(%G+C) - (600/N), where N is the number of bases in the hybrid, and [Na+] is the concentration of sodium ions in the hybridization buffer ([Na+] for lxSSC = 0 165 M) Additional examples of stringency conditions for polynucleotide hybridization are provided in Sambrook, J., E.F. Fritsch, and T. Maniatis, 1989, Molecular Cloning: A
Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, chapters 9 and 11, and Current Protocols in Molecular Biology, 1995, F.M. Ausubel et al., eds., John Wiley & Sons, Inc., sections 2.10 and 6.3-6.4, incorporated herein by reference.
Preferably, each such hybridizing polynucleotide has a length that is at least 25%(more preferably at least 50%, and most preferably at least 75%) of the length of the polynucleotide of the present invention to which it hybridizes, and has at least 60% sequence identity (more preferably, at least 75% identity; most preferably at least 90% or 95% identity) with the polynucleotide of the present invention to which it hybridizes, where sequence identity is determined by comparing the sequences of the hybridizing polynucleotides when aligned so as to maximize overlap and identity while minimizing sequence gaps.
The isolated polynucleotide of the invention may be operably linked to an expression control sequence such as the pMT2 or pED expression vectors disclosed in Kaufman et al, Nucleic Acids Res. 19, 4485-4490 (1991), in order to produce the protein recombinantly. Many suitable expression control sequences are known in the art. General methods of expressing recombinant proteins are also known and are exemplified in R. Kaufman, Methods in Enzymology 185, 537-566 (1990). As defined herein "operably linked" means that the isolated polynucleotide of the invention and an expression control sequence are situated within a vector or cell in such a way that the protein is expressed by a host cell which has been transformed (transfected) with the ligated polynucleotide/expression control sequence.
A number of types of cells may act as suitable host cells for expression of the protein. Mammalian host cells include, for example, monkey COS cells, Chinese Hamster
Ovary (CHO) cells, human kidney 293 cells, human epidermal A431 cells, human Colo205 cells, 3T3 cells, CV-1 cells, other transformed primate cell lines, normal diploid cells, cell strains derived from in vitro culture of primary tissue, primary explants, HeLa cells, mouse L cells, BHK, HL-60, U937, HaK or Jurkat cells. Alternatively, it may be possible to produce the protein in lower eukaryotes such as yeast or in prokaryotes such as bacteria. Potentially suitable yeast strains include Saccharomyces cerevisiae, Schizosaccharomyces pombe, Kluyveromyces strains, Candida, or any yeast strain capable of expressing heterologous proteins. Potentially suitable bacterial strains include Escherichia coli, Bacillus subtilis, Salmonella typhimurium, or any bacterial strain capable of expressing heterologous proteins. If the protein is made in yeast or bacteria, it may be necessary to modify the protein produced therein, for example by phosphorylation or glycosylation of the appropriate sites, in order to obtain the functional protein. Such covalent attachments may be accomplished using known chemical or enzymatic methods.
The protein may also be produced by operably linking the isolated polynucleotide of the invention to suitable control sequences in one or more insect expression vectors, and employing an insect expression system. Materials and methods for baculovirus/insect cell expression systems are commercially available in kit form from, e.g., Invitrogen, San Diego, California, U.S.A. (the MaxBac® kit), and such methods are well known in the art, as described in Summers and Smith, Texas Agricultural Experiment Station Bulletin No. 1555 (1987), incorporated herein by reference. As used herein, an insect cell capable of expressing a polynucleotide of the present invention is "transformed." The protein of the invention may be prepared by culturing transformed host cells under culture conditions suitable to express the recombinant protein. The resulting expressed protein may then be purified from such culture (i.e., from culture medium or cell extracts) using known purification processes, such as gel filtration and ion exchange chromatography. The purification of the protein may also include an affinity column containing agents which will bind to the protein; one or more column steps over such affinity resins as concanavalin A-agarose, heparin-toyopearl® or Cibacrom blue 3GA Sepharose®; one or more steps involving hydrophobic interaction chromatography using such resins as phenyl ether, butyl ether, or propyl ether; or immunoaffinity chromatography. Alternatively, the protein of the invention may also be expressed in a form which will facilitate purification. For example, it may be expressed as a fusion protein, such as those of maltose binding protein (MBP), glutathione-S-transferase (GST) or thioredoxin (TRX). Kits for expression and purification of such fusion proteins are commercially available from New England BioLab (Beverly, MA), Pharmacia (Piscataway, NJ) and InVitrogen, respectively. The protein can also be tagged with an epitope and subsequently purified by using a specific antibody directed to such epitope. One such epitope ("Flag") is commercially available from Kodak (New Haven, CT).
Finally, one or more reverse-phase high performance liquid chromatography (RP- HPLC) steps employing hydrophobic RP-HPLC media, e.g., silica gel having pendant methyl or other aliphatic groups, can be employed to further purify the protein. Some or all of the foregoing purification steps, in various combinations, can also be employed to provide a substantially homogeneous isolated recombinant protein. The protein thus purified is substantially free of other mammalian proteins and is defined in accordance with the present invention as an "isolated protein."
The protein of the invention may also be expressed as a product of transgenic animals, e.g., as a component of the milk of transgenic cows, goats, pigs, or sheep which are characterized by somatic or germ cells containing a nucleotide sequence encoding the protein. The protein may also be produced by known conventional chemical synthesis.
Methods for constructing the proteins of the present invention by synthetic means are known to those skilled in the art. The synthetically-constructed protein sequences, by virtue of sharing primary, secondary or tertiary structural and/or conformational characteristics with proteins may possess biological properties in common therewith, including protein activity. Thus, they may be employed as biologically active or immunological substitutes for natural, purified proteins in screening of therapeutic compounds and in immunological processes for the development of antibodies.
The proteins provided herein also include proteins characterized by amino acid sequences similar to those of purified proteins but into which modification are naturally provided or deliberately engineered. For example, modifications in the peptide or DNA sequences can be made by those skilled in the art using known techniques. Modifications of interest in the protein sequences may include the alteration, substitution, replacement, insertion or deletion of a selected amino acid residue in the coding sequence. For example, one or more of the cysteine residues may be deleted or replaced with another amino acid to alter the conformation of the molecule. Techniques for such alteration, substitution, replacement, insertion or deletion are well known to those skilled in the art (see, e.g., U.S. Patent No.4,518,584). Preferably, such alteration, substitution, replacement, insertion or deletion retains the desired activity of the protein.
Other fragments and derivatives of the sequences of proteins which would be expected to retain protein activity in whole or in part and may thus be useful for screening or other immunological methodologies may also be easily made by those skilled in the art given the disclosures herein. Such modifications are believed to be encompassed by the present invention. USES AND BIOLOGICAL ACTIVITY
The polynucleotides and proteins of the present invention are expected to exhibit one or more of the uses or biological activities (including those associated with assays cited herein) identified below. Uses or activities described for proteins of the present invention may be provided by administration or use of such proteins or by administration or use of polynucleotides encoding such proteins (such as, for example, in gene therapies or vectors suitable for introduction of DNA).
Research Uses and Utilities The polynucleotides provided by the present invention can be used by the research community for various purposes. The polynucleotides can be used to express recombinant protein for analysis, characterization or therapeutic use; as markers for tissues in which the corresponding protein is preferentially expressed (either constitutively or at a particular stage of tissue differentiation or development or in disease states); as molecular weight markers on Southern gels; as chromosome markers or tags (when labeled) to identify chromosomes or to map related gene positions; to compare with endogenous DNA sequences in patients to identify potential genetic disorders; as probes to hybridize and thus discover novel, related DNA sequences; as a source of information to derive PCR primers for genetic fingerprinting; as a probe to "subtract-out" known sequences in the process of discovering other novel polynucleotides; for selecting and making oligomers for attachment to a "gene chip" or other support, including for examination of expression patterns; to raise anti-protein antibodies using DNA immunization techniques; and as an antigen to raise anti-DNA antibodies or elicit another immune response. Where the polynucleotide encodes a protein which binds or potentially binds to another protein (such as, for example, in a receptor-ligand interaction), the polynucleotide can also be used in interaction trap assays (such as, for example, those described in Gyuris et al, 1993, Cell 75: 791-803 and in Rossi et al, 1997, Proc. Natl. Acad. Sci. USA 94: 8405-8410, all of which are incorporated by reference herein) to identify polynucleotides encoding the other protein with which binding occurs or to identify inhibitors of the binding interaction.
The proteins provided by the present invention can similarly be used in assay to determine biological activity, including in a panel of multiple proteins for high- throughput screening; to raise antibodies or to elicit another immune response; as a reagent (including the labeled reagent) in assays designed to quantitatively determine levels of the protein (or its receptor) in biological fluids; as markers for tissues in which the corresponding protein is preferentially expressed (either constitutively or at a particular stage of tissue differentiation or development or in a disease state); and, of course, to isolate correlative receptors or ligands. Where the protein binds or potentially binds to another protein (such as, for example, in a receptor-ligand interaction), the protein can be used to identify the other protein with which binding occurs or to identify inhibitors of the binding interaction. Proteins involved in these binding interactions can also be used to screen for peptide or small molecule inhibitors or agonists of the binding interaction. Any or all of these research utilities are capable of being developed into reagent grade or kit format for commercialization as research products.
Methods for performing the uses listed above are well known to those skilled in the art. References disclosing such methods include without limitation "Molecular Cloning: A Laboratory Manual", 2d ed., Cold Spring Harbor Laboratory Press, Sambrook, J., E.F. Fritsch and T. Maniatis eds., 1989, and "Methods in Enzymology: Guide to Molecular Cloning Techniques", Academic Press, Berger, S.L. and A.R. Kimmel eds., 1987.
Nutritional Uses
Polynucleotides and proteins of the present invention can also be used as nutritional sources or supplements. Such uses include without limitation use as a protein or amino acid supplement, use as a carbon source, use as a nitrogen source and use as a source of carbohydrate. In such cases the protein or polynucleotide of the invention can be added to the feed of a particular organism or can be administered as a separate solid or liquid preparation, such as in the form of powder, pills, solutions, suspensions or capsules. In the case of microorganisms, the protein or polynucleotide of the invention can be added to the medium in or on which the microorganism is cultured.
Cytokine and Cell Proliferation /Differentiation Activity
A protein of the present invention may exhibit cytokine, cell proliferation (either inducing or inhibiting) or cell differentiation (either inducing or inhibiting) activity or may induce production of other cytokines in certain cell populations. Many protein factors discovered to date, including all known cytokines, have exhibited activity in one or more factor dependent cell proliferation assays, and hence the assays serve as a convenient confirmation of cytokine activity. The activity of a protein of the present invention is evidenced by any one of a number of routine factor dependent cell proliferation assays for cell lines including, without limitation, 32D, DA2, DA1G, T10, B9, B9/11, BaF3, MC9/G, M+ (preB M+), 2E8, RB5, DAI, 123, T1165, HT2, CTLL2, TF-1, Mo7e and CMK.
The activity of a protein of the invention may, among other means, be measured by the following methods:
Assays for T-cell or thymocyte proliferation include without limitation those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley- Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function 3.1-3.19; Chapter 7, Immunologic studies in Humans); Takai et al., J. Immunol. 137:3494-3500, 1986; Bertagnolli et al., J. Immunol. 145:1706-1712, 1990; Bertagnolli et al., Cellular Immunology 133:327-341, 1991; Bertagnolli, et al., J. Immunol. 149:3778-3783, 1992; Bowman et al., J. Immunol. 152: 1756-1761, 1994. Assays for cytokine production and /or proliferation of spleen cells, lymph node cells or thymocytes include, without limitation, those described in: Polyclonal T cell stimulation, Kruisbeek, A.M. and Shevach, E.M. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 3.12.1-3.12.14, John Wiley and Sons, Toronto. 1994; and Measurement of mouse and human Interferon γ, Schreiber, R.D. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 6.8.1-6.8.8, John Wiley and Sons, Toronto. 1994.
Assays for proliferation and differentiation of hematopoietic and lymphopoietic cells include, without limitation, those described in: Measurement of Human and Murine
Interleukin 2 and Interleukin 4, Bottomly, K., Davis, L.S. and Lipsky, P.E. In Current
Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 6.3.1-6.3.12, John Wiley and Sons, Toronto. 1991; deVries et al., J. Exp. Med. 173:1205-1211, 1991; Moreau et al., Nature
336:690-692, 1988; Greenberger et al., Proc. Natl. Acad. Sci. U.S.A. 80:2931-2938, 1983; Measurement of mouse and human interleukin 6 - Nordan, R. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 6.6.1-6.6.5, John Wiley and Sons, Toronto. 1991; Smith et al., Proc. Natl. Acad. Sci. U.S.A. 83:1857-1861, 1986; Measurement of human Interleukin 11 - Bennett, F., Giannotti, J., Clark, S.C. and Turner, K. J. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 6.15.1 John Wiley and Sons, Toronto. 1991; Measurement of mouse and human Interleukin 9 - Ciarletta, A., Giannotti, J., Clark, S.C. and Turner, K.J. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 6.13.1, John Wiley and Sons, Toronto. 1991. Assays for T-cell clone responses to antigens (which will identify, among others, proteins that affect APC-T cell interactions as well as direct T-cell effects by measuring proliferation and cytokine production) include, without limitation, those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function; Chapter 6, Cytokines and their cellular receptors; Chapter 7, Immunologic studies in Humans); Weinberger et al., Proc. Natl. Acad. Sci. USA 77:6091-6095, 1980; Weinberger et al., Eur. J. Immun. 11:405-411, 1981; Takai et al., J. Immunol. 137:3494-3500, 1986; Takai et al, J. Immunol. 140:508-512, 1988.
Immune Stimulating or Suppressing Activity
A protein of the present invention may also exhibit immune stimulating or immune suppressing activity, including without limitation the activities for which assays are described herein. A protein may be useful in the treatment of various immune deficiencies and disorders (including severe combined immunodeficiency (SOD)), e.g., in regulating (up or down) growth and proliferation of T and /or B lymphocytes, as well as effecting the cytolytic activity of NK cells and other cell populations. These immune deficiencies may be genetic or be caused by viral (e.g., HIV) as well as bacterial or fungal infections, or may result from autoimmune disorders. More specifically, infectious diseases causes by viral, bacterial, fungal or other infection may be treatable using a protein of the present invention, including infections by HIV, hepatitis viruses, herpesviruses, mycobacteria, Leishmania spp., malaria spp. and various fungal infections such as candidiasis. Of course, in this regard, a protein of the present invention may also be useful where a boost to the immune system generally may be desirable, i.e., in the treatment of cancer.
Autoimmune disorders which may be treated using a protein of the present invention include, for example, connective tissue disease, multiple sclerosis, systemic lupus erythematosus, rheumatoid arthritis, autoimmune pulmonary inflammation, Guillain-Barre syndrome, autoimmune thyroiditis, insulin dependent diabetes mellitis, myasthenia gravis, graft-versus-host disease and autoimmune inflammatory eye disease. Such a protein of the present invention may also to be useful in the treatment of allergic reactions and conditions, such as asthma (particularly allergic asthma) or other respiratory problems. Other conditions, in which immune suppression is desired (including, for example, organ transplantation), may also be treatable using a protein of the present invention.
Using the proteins of the invention it may also be possible to immune responses, in a number of ways. Down regulation may be in the form of inhibiting or blocking an immune response already in progress or may involve preventing the induction of an immune response. The functions of activated T cells may be inhibited by suppressing T cell responses or by inducing specific tolerance in T cells, or both. Immunosuppression of T cell responses is generally an active, non-antigen-specific, process which requires continuous exposure of the T cells to the suppressive agent. Tolerance, which involves inducing non-responsiveness or anergy in T cells, is distinguishable from immunosuppression in that it is generally antigen-specific and persists after exposure to the tolerizing agent has ceased. Operationally, tolerance can be demonstrated by the lack of a T cell response upon reexposure to specific antigen in the absence of the tolerizing agent. Down regulating or preventing one or more antigen functions (including without limitation B lymphocyte antigen functions (such as , for example, B7)), e.g., preventing high level lymphokine synthesis by activated T cells, will be useful in situations of tissue, skin and organ transplantation and in graft-versus-host disease (GVHD). For example, blockage of T cell function should result in reduced tissue destruction in tissue transplantation. Typically, in tissue transplants, rejection of the transplant is initiated through its recognition as foreign by T cells, followed by an immune reaction that destroys the transplant. The administration of a molecule which inhibits or blocks interaction of a B7 lymphocyte antigen with its natural ligand(s) on immune cells (such as a soluble, monomeric form of a peptide having B7-2 activity alone or in conjunction with a monomeric form of a peptide having an activity of another B lymphocyte antigen (e.g., B7-
1, B7-3) or blocking antibody), prior to transplantation can lead to the binding of the molecule to the natural ligand(s) on the immune cells without transmitting the corresponding costimulatory signal. Blocking B lymphocyte antigen function in this matter prevents cytokine synthesis by immune cells, such as T cells, and thus acts as an immunosuppressant. Moreover, the lack of costimulation may also be sufficient to anergize the T cells, thereby inducing tolerance in a subject. Induction of long-term tolerance by B lymphocyte antigen-blocking reagents may avoid the necessity of repeated administration of these blocking reagents. To achieve sufficient immunosuppression or tolerance in a subject, it may also be necessary to block the function of a combination of
B lymphocyte antigens.
The efficacy of particular blocking reagents in preventing organ transplant rejection or GVHD can be assessed using animal models that are predictive of efficacy in humans. Examples of appropriate systems which can be used include allogeneic cardiac grafts in rats and xenogeneic pancreatic islet cell grafts in mice, both of which have been used to examine the immunosuppressive effects of CTLA4Ig fusion proteins in vivo as described in Lenschow et al, Science 257:789-792 (1992) and Turka et al, Proc. Natl. Acad.
Sci USA, 89:11102-11105 (1992). In addition, murine models of GVHD (see Paul ed., Fundamental Immunology, Raven Press, New York, 1989, pp. 846-847) can be used to determine the effect of blocking B lymphocyte antigen function in vivo on the development of that disease.
Blocking antigen function may also be therapeutically useful for treating autoimmune diseases. Many autoimmune disorders are the result of inappropriate activation of T cells that are reactive against self tissue and which promote the production of cytokines and autoantibodies involved in the pathology of the diseases. Preventing the activation of autoreactive T cells may reduce or eliminate disease symptoms.
Administration of reagents which block costimulation of T cells by disrupting receptor igand interactions of B lymphocyte antigens can be used to inhibit T cell activation and prevent production of autoantibodies or T cell-derived cytokines which may be involved in the disease process. Additionally, blocking reagents may induce antigen-specific tolerance of autoreactive T cells which could lead to long-term relief from the disease. The efficacy of blocking reagents in preventing or alleviating autoimmune disorders can be determined using a number of well-characterized animal models of human autoimmune diseases. Examples include murine experimental autoimmune encephalitis, systemic lupus erythmatosis in MRL /Ipr/lpr mice or NZB hybrid mice, murine autoimmune collagen arthritis, diabetes mellitus in NOD mice and BB rats, and murine experimental myasthenia gravis (see Paul ed., Fundamental Immunology, Raven Press, New York, 1989, pp. 840-856). Upregulation of an antigen function (preferably a B lymphocyte antigen function), as a means of up regulating immune responses, may also be useful in therapy. Upregulation of immune responses may be in the form of enhancing an existing immune response or eliciting an initial immune response. For example, enhancing an immune response through stimulating B lymphocyte antigen function may be useful in cases of viral infection. In addition, systemic viral diseases such as influenza, the common cold, and encephalitis might be alleviated by the administration of stimulatory forms of B lymphocyte antigens systemically.
Alternatively, anti-viral immune responses may be enhanced in an infected patient by removing T cells from the patient, costimulating the T cells in vitro with viral antigen- pulsed APCs either expressing a peptide of the present invention or together with a stimulatory form of a soluble peptide of the present invention and reintroducing the in vitro activated T cells into the patient. Another method of enhancing anti-viral immune responses would be to isolate infected cells from a patient, transfect them with a nucleic acid encoding a protein of the present invention as described herein such that the cells express all or a portion of the protein on their surface, and reintroduce the transfected cells into the patient. The infected cells would now be capable of delivering a costimulatory signal to, and thereby activate, T cells in vivo.
In another application, up regulation or enhancement of antigen function (preferably B lymphocyte antigen function) may be useful in the induction of tumor immunity. Tumor cells (e.g., sarcoma, melanoma, lymphoma, leukemia, neuroblastoma, carcinoma) transfected with a nucleic acid encoding at least one peptide of the present invention can be administered to a subject to overcome tumor-specific tolerance in the subject. If desired, the tumor cell can be transfected to express a combination of peptides. For example, tumor cells obtained from a patient can be transfected ex vivo with an expression vector directing the expression of a peptide having B7-2-like activity alone, or in conjunction with a peptide having B7-l-like activity and/or B7-3-like activity. The transfected tumor cells are returned to the patient to result in expression of the peptides on the surface of the transfected cell. Alternatively, gene therapy techniques can be used to target a tumor cell for transfection in vivo.
The presence of the peptide of the present invention having the activity of a B lymphocyte antigen(s) on the surface of the tumor cell provides the necessary costimulation signal to T cells to induce a T cell mediated immune response against the transfected tumor cells. In addition, tumor cells which lack MHC class I or MHC class II molecules, or which fail to reexpress sufficient amounts of MHC class I or MHC class II molecules, can be transfected with nucleic acid encoding all or a portion of (e.g., a cytoplasmic-domain truncated portion) of an MHC class I α chain protein and β2 microglobulin protein or an MHC class II chain protein and an MHC class II β chain protein to thereby express MHC class I or MHC class II proteins on the cell surface. Expression of the appropriate class I or class II MHC in conjunction with a peptide having the activity of a B lymphocyte antigen (e.g., B7-1, B7-2, B7-3) induces a T cell mediated immune response against the transfected tumor cell. Optionally, a gene encoding an antisense construct which blocks expression of an MHC class II associated protein, such as the invariant chain, can also be cotransfected with a DNA encoding a peptide having the activity of a B lymphocyte antigen to promote presentation of tumor associated antigens and induce tumor specific immunity. Thus, the induction of a T cell mediated immune response in a human subject may be sufficient to overcome tumor-specific tolerance in the subject. The activity of a protein of the invention may, among other means, be measured by the following methods:
Suitable assays for thymocyte or splenocyte cytotoxicity include, without limitation, those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function 3.1- 3.19; Chapter 7, Immunologic studies in Humans); Herrmann et al., Proc. Natl. Acad. Sci. USA 78:2488-2492, 1981; Herrmann et al., J. Immunol. 128:1968-1974, 1982; Handa et al., J. Immunol. 135:1564-1572, 1985; Takai et al., J. Immunol. 137:3494-3500, 1986; Takai et al., J. Immunol. 140:508-512, 1988; Herrmann et al., Proc. Natl. Acad. Sci. USA 78:2488-2492, 1981; Herrmann et al., J. Immunol. 128:1968-1974, 1982; Handa et al., J. Immunol.
135:1564-1572, 1985; Takai et al., J. Immunol. 137:3494-3500, 1986; Bowmanet al., J.
Virology 61:1992-1998; Takai et al., J. Immunol. 140:508-512, 1988; Bertagnolli et al.,
Cellular Immunology 133:327-341, 1991; Brown et al., J. Immunol. 153:3079-3092, 1994.
Assays for T-cell-dependent immunoglobulin responses and isotype switching (which will identify, among others, proteins that modulate T-cell dependent antibody responses and that affect Thl /Th2 profiles) include, without limitation, those described in: Maliszewski, J. Immunol. 144:3028-3033, 1990; and Assays for B cell function: In vitro antibody production, Mond, J.J. and Brunswick, M. In Current Protocols in Immunology. J.E.e.a. Coligan eds. Vol 1 pp. 3.8.1-3.8.16, John Wiley and Sons, Toronto. 1994. Mixed lymphocyte reaction (MLR) assays (which will identify, among others, proteins that generate predominantly Thl and CTL responses) include, without limitation, those described in: Current Protocols in Immunology, Ed by J. E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W Strober, Pub. Greene Publishing Associates and Wiley- Interscience (Chapter 3, In Vitro assays for Mouse Lymphocyte Function 3.1-3.19; Chapter 7, Immunologic studies in Humans); Takai et al., J. Immunol. 137:3494-3500, 1986; Takai et al., J. Immunol. 140:508-512, 1988; Bertagnolli et al., J. Immunol. 149:3778-3783, 1992.
Dendritic cell-dependent assays (which will identify, among others, proteins expressed by dendritic cells that activate naive T-cells) include, without limitation, those described in: Guery et al., J. Immunol. 134:536-544, 1995; Inaba et al., Journal of Experimental Medicine 173:549-559, 1991; Macatonia et al., Journal of Immunology 154:5071-5079, 1995; Porgador et al., Journal of Experimental Medicine 182:255-260, 1995; Nair et al., Journal of Virology 67:4062-4069, 1993; Huang et al., Science 264:961-965, 1994; Macatonia et al., Journal of Experimental Medicine 169:1255-1264, 1989; Bhardwaj et al., Journal of Clinical Investigation 94:797-807, 1994; and Inaba et al., Journal of Experimental Medicine 172:631-640, 1990.
Assays for lymphocyte survival /apoptosis (which will identify, among others, proteins that prevent apoptosis after superantigen induction and proteins that regulate lymphocyte homeostasis) include, without limitation, those described in: Darzynkiewicz et al., Cytometry 13:795-808, 1992; Gorczyca et al., Leukemia 7:659-670, 1993; Gorczyca et al., Cancer Research 53:1945-1951, 1993; Itoh et al., Cell 66:233-243, 1991; Zacharchuk, Journal of Immunology 145:4037-4045, 1990; Zamai et al., Cytometry 14:891-897, 1993; Gorczyca et al., International Journal of Oncology 1:639-648, 1992.
Assays for proteins that influence early steps of T-cell commitment and development include, without limitation, those described in: Antica et al., Blood
84:111-117, 1994; Fine et al., Cellular Immunology 155:111-122, 1994; Galy et al., Blood 85:2770-2778, 1995; Toki et al., Proc. Nat. Acad Sci. USA 88:7548-7551, 1991.
Hematopoiesis Regulating Activity A protein of the present invention may be useful in regulation of hematopoiesis and, consequently, in the treatment of myeloid or lymphoid cell deficiencies. Even marginal biological activity in support of colony forming cells or of factor-dependent cell lines indicates involvement in regulating hematopoiesis, e.g. in supporting the growth and proliferation of erythroid progenitor cells alone or in combination with other cytokines, thereby indicating utility, for example, in treating various anemias or for use in conjunction with irradiation /chemotherapy to stimulate the production of erythroid precursors and /or erythroid cells; in supporting the growth and proliferation of myeloid cells such as granulocytes and monocytes/macrophages (i.e., traditional CSF activity) useful, for example, in conjunction with chemotherapy to prevent or treat consequent myelo-suppression; in supporting the growth and proliferation of megakaryocytes and consequently of platelets thereby allowing prevention or treatment of various platelet disorders such as thrombocytopenia, and generally for use in place of or complimentary to platelet transfusions; and /or in supporting the growth and proliferation of hematopoietic stem cells which are capable of maturing to any and all of the above- mentioned hematopoietic cells and therefore find therapeutic utility in various stem cell disorders (such as those usually treated with transplantation, including, without limitation, aplastic anemia and paroxysmal nocturnal hemoglobinuria), as well as in repopulating the stem cell compartment post irradiation /chemotherapy, either in-vivo or ex-vivo (i.e., in conjunction with bone marrow transplantation or with peripheral progenitor cell transplantation (homologous or heterologous)) as normal cells or genetically manipulated for gene therapy.
The activity of a protein of the invention may, among other means, be measured by the following methods: Suitable assays for proliferation and differentiation of various hematopoietic lines are cited above.
Assays for embryonic stem cell differentiation (which will identify, among others, proteins that influence embryonic differentiation hematopoiesis) include, without limitation, those described in: Johansson et al. Cellular Biology 15:141-151, 1995; Keller et al., Molecular and Cellular Biology 13:473-486, 1993; McClanahan et al., Blood 81:2903-2915, 1993.
Assays for stem cell survival and differentiation (which will identify, among others, proteins that regulate lympho-hematopoiesis) include, without limitation, those described in: Methylcellulose colony forming assays, Freshney, M.G. In Culture of Hematopoietic Cells. R.I. Freshney, et al eds. Vol pp. 265-268, Wiley-Liss, Inc., New York,
NY. 1994; Hirayama et al., Proc. Natl. Acad. Sci. USA 89:5907-5911, 1992; Primitive hematopoietic colony forming cells with high proliferative potential, McNiece, I.K. and Briddell, R.A. In Culture of Hematopoietic Cells. R.I. Freshney, et al. eds. Vol pp. 23-39, Wiley-Liss, Inc., New York, NY. 1994; Neben et al., Experimental Hematology 22:353-359, 1994; Cobblestone area forming cell assay, Ploemacher, R.E. In Culture of Hematopoietic
Cells. R.I. Freshney, et al. eds. Vol pp. 1-21, Wiley-Liss, Inc., New York, NY. 1994; Long term bone marrow cultures in the presence of stromal cells, Spooncer, E., Dexter, M. and Allen, T. In Culture of Hematopoietic Cells. R.I. Freshney, et al. eds. Vol pp. 163-179, Wiley-Liss, Inc., New York, NY. 1994; Long term culture initiating cell assay, Sutherland, HJ. In Culture of Hematopoietic Cells. R.I. Freshney, et al. eds. Vol pp. 139-162, Wiley-Liss, Inc., New York, NY. 1994.
Tissue Growth Activity A protein of the present invention also may have utility in compositions used for bone, cartilage, tendon, ligament and /or nerve tissue growth or regeneration, as well as for wound healing and tissue repair and replacement, and in the treatment of burns, incisions and ulcers.
A protein of the present invention, which induces cartilage and /or bone growth in circumstances where bone is not normally formed, has application in the healing of bone fractures and cartilage damage or defects in humans and other animals. Such a preparation employing a protein of the invention may have prophylactic use in closed as well as open fracture reduction and also in the improved fixation of artificial joints. De novo bone formation induced by an osteogenic agent contributes to the repair of congenital, trauma induced, or oncologic resection induced craniofacial defects, and also is useful in cosmetic plastic surgery.
A protein of this invention may also be used in the treatment of periodontal disease, and in other tooth repair processes. Such agents may provide an environment to attract bone-forming cells, stimulate growth of bone-forming cells or induce differentiation of progenitors of bone-forming cells. A protein of the invention may also be useful in the treatment of osteoporosis or osteoarthritis, such as through stimulation of bone and /or cartilage repair or by blocking inflammation or processes of tissue destruction (collagenase activity, osteoclast activity, etc.) mediated by inflammatory processes. Another category of tissue regeneration activity that may be attributable to the protein of the present invention is tendon /ligament formation. A protein of the present invention, which induces tendon /ligament-like tissue or other tissue formation in circumstances where such tissue is not normally formed, has application in the healing of tendon or ligament tears, deformities and other tendon or ligament defects in humans and other animals. Such a preparation employing a tendon/ligament-like tissue inducing protein may have prophylactic use in preventing damage to tendon or ligament tissue, as well as use in the improved fixation of tendon or ligament to bone or other tissues, and in repairing defects to tendon or ligament tissue. De novo tendon/ligament-like tissue formation induced by a composition of the present invention contributes to the repair of congenital, trauma induced, or other tendon or ligament defects of other origin, and is also useful in cosmetic plastic surgery for attachment or repair of tendons or ligaments. The compositions of the present invention may provide an environment to attract tendon- or ligament-forming cells, stimulate growth of tendon- or ligament-forming cells, induce differentiation of progenitors of tendon- or ligament-forming cells, or induce growth of tendon/ligament cells or progenitors ex vivo for return in vivo to effect tissue repair. The compositions of the invention may also be useful in the treatment of tendinitis, carpal tunnel syndrome and other tendon or ligament defects. The compositions may also include an appropriate matrix and /or sequestering agent as a carrier as is well known in the art.
The protein of the present invention may also be useful for proliferation of neural cells and for regeneration of nerve and brain tissue, i.e. for the treatment of central and peripheral nervous system diseases and neuropathies, as well as mechanical and traumatic disorders, which involve degeneration, death or trauma to neural cells or nerve tissue. More specifically, a protein may be used in the treatment of diseases of the peripheral nervous system, such as peripheral nerve injuries, peripheral neuropathy and localized neuropathies, and central nervous system diseases, such as Alzheimer's, Parkinson's disease, Huntington's disease, amyotrophic lateral sclerosis, and Shy-Drager syndrome. Further conditions which may be treated in accordance with the present invention include mechanical and traumatic disorders, such as spinal cord disorders, head trauma and cerebrovascular diseases such as stroke. Peripheral neuropathies resulting from chemotherapy or other medical therapies may also be treatable using a protein of the invention.
Proteins of the invention may also be useful to promote better or faster closure of non-healing woimds, including without limitation pressure ulcers, ulcers associated with vascular insufficiency, surgical and traumatic wounds, and the like.
It is expected that a protein of the present invention may also exhibit activity for generation or regeneration of other tissues, such as organs (including, for example, pancreas, liver, intestine, kidney, skin, endothelium), muscle (smooth, skeletal or cardiac) and vascular (including vascular endothelium) tissue, or for promoting the growth of cells comprising such tissues. Part of the desired effects may be by inhibition or modulation of fibrotic scarring to allow normal tissue to regenerate. A protein of the invention may also exhibit angiogenic activity. A protein of the present invention may also be useful for gut protection or regeneration and treatment of lung or liver fibrosis, reperfusion injury in various tissues, and conditions resulting from systemic cytokine damage.
A protein of the present invention may also be useful for promoting or inhibiting differentiation of tissues described above from precursor tissues or cells; or for inhibiting the growth of tissues described above.
The activity of a protein of the invention may, among other means, be measured by the following methods:
Assays for tissue generation activity include, without limitation, those described in: International Patent Publication No. W095/ 16035 (bone, cartilage, tendon); International Patent Publication No. W095/ 05846 (nerve, neuronal); International Patent Publication No. WO91/07491 (skin, endothelium ).
Assays for wound healing activity include, without limitation, those described in: Winter, Epidermal Wound Healing, pps. 71-112 (Maibach, HI and Rovee, DT, eds.), Year Book Medical Publishers, Inc., Chicago, as modified by Eaglstein and Mertz, J. Invest. Dermatol 71:382-84 (1978).
Activin/Inhibin Activity
A protein of the present invention may also exhibit activin- or inhibin-related activities. Inhibins are characterized by their ability to inhibit the release of follicle stimulating hormone (FSH), while activins and are characterized by their ability to stimulate the release of follicle stimulating hormone (FSH). Thus, a protein of the present invention, alone or in heterodimers with a member of the inhibin α family, may be useful as a contraceptive based on the ability of inhibins to decrease fertility in female mammals and decrease spermatogenesis in male mammals. Administration of sufficient amounts of other inhibins can induce infertility in these mammals. Alternatively, the protein of the invention, as a homodimer or as a heterodimer with other protein subunits of the inhibin- β group, may be useful as a fertility inducing therapeutic, based upon the ability of activin molecules in stimulating FSH release from cells of the anterior pituitary. See, for example, United States Patent 4,798,885. A protein of the invention may also be useful for advancement of the onset of fertility in sexually immature mammals, so as to increase the lifetime reproductive performance of domestic animals such as cows, sheep and pigs.
The activity of a protein of the invention may, among other means, be measured by the following methods: Assays for activin/inhibin activity include, without limitation, those described in: Vale et al., Endocrinology 91:562-572, 1972; Ling et al., Nature 321:779-782, 1986; Vale et al., Nature 321:776-779, 1986; Mason et al., Nature 318:659-663, 1985; Forage et al., Proc. Natl. Acad. Sci. USA 83:3091-3095, 1986.
Chemotactic/Chemokinetic Activity
A protein of the present invention may have chemotactic or chemokinetic activity (e.g., act as a chemokine) for mammalian cells, including, for example, monocytes, fibroblasts, neutrophils, T-cells, mast cells, eosinophils, epithelial and /or endothelial cells. Chemotactic and chemokinetic proteins can be used to mobilize or attract a desired cell population to a desired site of action. Chemotactic or chemokinetic proteins provide particular advantages in treatment of wounds and other trauma to tissues, as well as in treatment of localized infections. For example, attraction of lymphocytes, monocytes or neutrophils to tumors or sites of infection may result in improved immune responses against the tumor or infecting agent.
A protein or peptide has chemotactic activity for a particular cell population if it can stimulate, directly or indirectly, the directed orientation or movement of such cell population. Preferably, the protein or peptide has the ability to directly stimulate directed movement of cells. Whether a particular protein has chemotactic activity for a population of cells can be readily determined by employing such protein or peptide in any known assay for cell chemotaxis.
The activity of a protein of the invention may, among other means, be measured by the following methods:
Assays for chemotactic activity (which will identify proteins that induce or prevent chemotaxis) consist of assays that measure the ability of a protein to induce the migration of cells across a membrane as well as the ability of a protein to induce the adhesion of one cell population to another cell population. Suitable assays for movement and adhesion include, without limitation, those described in: Current Protocols in Immunology, Ed by J.E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W.Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 6.12, Measurement of alpha and beta Chemokines 6.12.1-6.12.28; Taub et al. J. Clin. Invest. 95:1370-1376, 1995; Lind et al. APMIS 103:140-146, 1995; Muller et al Eur. J. Immunol. 25: 1744-1748; Gruber et al. J. of Immunol. 152:5860-5867, 1994; Johnston et al. J. of Immunol. 153: 1762-1768, 1994. Hemostatic and Thrombolytic Activity
A protein of the invention may also exhibit hemostatic or thrombolytic activity. As a result, such a protein is expected to be useful in treatment of various coagulation disorders (including hereditary disorders, such as hemophilias) or to enhance coagulation and other hemostatic events in treating wounds resulting from trauma, surgery or other causes. A protein of the invention may also be useful for dissolving or inhibiting formation of thromboses and for treatment and prevention of conditions resulting therefrom (such as, for example, infarction of cardiac and central nervous system vessels (e.g., stroke). The activity of a protein of the invention may, among other means, be measured by the following methods:
Assay for hemostatic and thrombolytic activity include, without limitation, those described in: Linet et al., J. Clin. Pharmacol. 26:131-140, 1986; Burdick et al., Thrombosis Res.45:413-419, 1987; Humphrey et al., Fibrinolysis 5:71-79 (1991); Schaub, Prostaglandins 35:467-474, 1988.
Receptor /Ligand Activity
A protein of the present invention may also demonstrate activity as receptors, receptor ligands or inhibitors or agonists of receptor /ligand interactions. Examples of such receptors and ligands include, without limitation, cytokine receptors and their ligands, receptor kinases and their ligands, receptor phosphatases and their ligands, receptors involved in cell-cell interactions and their ligands (including without limitation, cellular adhesion molecules (such as selectins, integrins and their ligands) and receptor/ligand pairs involved in antigen presentation, antigen recognition and development of cellular and humoral immune responses). Receptors and ligands are also useful for screening of potential peptide or small molecule inhibitors of the relevant receptor/ligand interaction. A protein of the present invention (including, without limitation, fragments of receptors and ligands) may themselves be useful as inhibitors of receptor/ligand interactions. The activity of a protein of the invention may, among other means, be measured by the following methods:
Suitable assays for receptor-ligand activity include without limitation those described imCurrent Protocols in Immunology, Ed by J.E. Coligan, A.M. Kruisbeek, D.H. Margulies, E.M. Shevach, W.Strober, Pub. Greene Publishing Associates and Wiley-Interscience (Chapter 7.28, Measurement of Cellular Adhesion under static conditions 7.28.1-7.28.22), Takai et al., Proc. Natl. Acad. Sci. USA 84:6864-6868, 1987; Bierer et al., J. Exp. Med. 168:1145-1156, 1988; Rosenstein et al., J. Exp. Med. 169:149-160 1989; Stoltenborg et al., J. Immunol. Methods 175:59-68, 1994; Stitt et al., Cell 80:661-670, 1995.
Anti-Inflammatory Activity
Proteins of the present invention may also exhibit anti-inflammatory activity. The anti-inflammatory activity may be achieved by providing a stimulus to cells involved in the inflammatory response, by inhibiting or promoting cell-cell interactions (such as, for example, cell adhesion), by inhibiting or promoting chemotaxis of cells involved in the inflammatory process, inhibiting or promoting cell extravasation, or by stimulating or suppressing production of other factors which more directly inhibit or promote an inflammatory response. Proteins exhibiting such activities can be used to treat inflammatory conditions including chronic or acute conditions), including without limitation inflammation associated with infection (such as septic shock, sepsis or systemic inflammatory response syndrome (SIRS)), ischemia-reperfusion injury, endotoxin lethality, arthritis, complement-mediated hyperacute rejection, nephritis, cytokine or chemokine-induced lung injury, inflammatory bowel disease, Crohn's disease or resulting from over production of cytokines such as TNF or IL-1. Proteins of the invention may also be useful to treat anaphylaxis and hypersensitivity to an antigenic substance or material.
Cadherin /Tumor Invasion Suppressor Activity
Cadherins are calcium-dependent adhesion molecules that appear to play major roles during development, particularly in defining specific cell types. Loss or alteration of normal cadherin expression can lead to changes in cell adhesion properties linked to tumor growth and metastasis. Cadherin malfunction is also implicated in other human diseases, such as pemphigus vulgaris and pemphigus foliaceus (auto-immune blistering skin diseases), Crohn's disease, and some developmental abnormalities. The cadherin superfamily includes well over forty members, each with a distinct pattern of expression. All members of the superfamily have in common conserved extracellular repeats (cadherin domains), but structural differences are found in other parts of the molecule. The cadherin domains bind calcium to form their tertiary structure and thus calcium is required to mediate their adhesion. Only a few amino acids in the first cadherin domain provide the basis for homophilic adhesion; modification of this recognition site can change the specificity of a cadherin so that instead of recognizing only itself, the mutant molecule can now also bind to a different cadherin. In addition, some cadherins engage in heterophilic adhesion with other cadherins. E-cadherin, one member of the cadherin superfamily, is expressed in epithelial cell types. Pathologically, if E-cadherin expression is lost in a tumor, the malignant cells become invasive and the cancer metastasizes. Transfection of cancer cell lines with polynucleotides expressing E-cadherin has reversed cancer-associated changes by returning altered cell shapes to normal, restoring cells' adhesiveness to each other and to their substrate, decreasing the cell growth rate, and drastically reducing anchorage- independent cell growth. Thus, reintroducing E-cadherin expression reverts carcinomas to a less advanced stage. It is likely that other cadherins have the same invasion suppressor role in carcinomas derived from other tissue types. Therefore, proteins of the present invention with cadherin activity, and polynucleotides of the present invention encoding such proteins, can be used to treat cancer. Introducing such proteins or polynucleotides into cancer cells can reduce or eliminate the cancerous changes observed in these cells by providing normal cadherin expression.
Cancer cells have also been shown to express cadherins of a different tissue type than their origin, thus allowing these cells to invade and metastasize in a different tissue in the body. Proteins of the present invention with cadherin activity, and polynucleotides of the present invention encoding such proteins, can be substituted in these cells for the inappropriately expressed cadherins, restoring normal cell adhesive properties and reducing or eliminating the tendency of the cells to metastasize.
Additionally, proteins of the present invention with cadherin activity, and polynucleotides of the present invention encoding such proteins, can used to generate antibodies recognizing and binding to cadherins. Such antibodies can be used to block the adhesion of inappropriately expressed tumor-cell cadherins, preventing the cells from forming a tumor elsewhere. Such an anti-cadherin antibody can also be used as a marker for the grade, pathological type, and prognosis of a cancer, i.e. the more progressed the cancer, the less cadherin expression there will be, and this decrease in cadherin expression can be detected by the use of a cadherin-binding antibody.
Fragments of proteins of the present invention with cadherin activity, preferably a polypeptide comprising a decapeptide of the cadherin recognition site, and polynucleotides of the present invention encoding such protein fragments, can also be used to block cadherin function by binding to cadherins and preventing them from binding in ways that produce undesirable effects. Additionally, fragments of proteins of the present invention with cadherin activity, preferably truncated soluble cadherin fragments which have been found to be stable in the circulation of cancer patients, and polynucleotides encoding such protein fragments, can be used to disturb proper cell-cell adhesion.
Assays for cadherin adhesive and invasive suppressor activity include, without limitation, those described in: Hortsch et al. J Biol Chem 270 (32): 18809-18817, 1995; Miyaki et al. Oncogene 11: 2547-2552, 1995; Ozawa et al. Cell 63: 1033-1038, 1990.
Tumor Inhibition Activity
In addition to the activities described above for immunological treatment or prevention of tumors, a protein of the invention may exhibit other anti-tumor activities. A protein may inhibit tumor growth directly or indirectly (such as, for example, via ADCC). A protein may exhibit its tumor inhibitory activity by acting on tumor tissue or tumor precursor tissue, by inhibiting formation of tissues necessary to support tumor growth (such as, for example, by inhibiting angiogenesis), by causing production of other factors, agents or cell types which inhibit tumor growth, or by suppressing, eliminating or inhibiting factors, agents or cell types which promote tumor growth.
Other Activities
A protein of the invention may also exhibit one or more of the following additional activities or effects: inhibiting the growth, infection or function of, or killing, infectious agents, including, without limitation, bacteria, viruses, fungi and other parasites; effecting (suppressing or enhancing) bodily characteristics, including, without limitation, height, weight, hair color, eye color, skin, fat to lean ratio or other tissue pigmentation, or organ or body part size or shape (such as, for example, breast augmentation or diminution, change in bone form or shape); effecting biorhythms or caricadic cycles or rhythms; effecting the fertility of male or female subjects; effecting the metabolism, catabolism, anabolism, processing, utilization, storage or elimination of dietary fat, lipid, protein, carbohydrate, vitamins, minerals, cofactors or other nutritional factors or component(s); effecting behavioral characteristics, including, without limitation, appetite, libido, stress, cognition (including cognitive disorders), depression (including depressive disorders) and violent behaviors; providing analgesic effects or other pain reducing effects; promoting differentiation and growth of embryonic stem cells in lineages other than hematopoietic lineages; hormonal or endocrine activity; in the case of enzymes, correcting deficiencies of the enzyme and treating deficiency-related diseases; treatment of hyperproliferative disorders (such as, for example, psoriasis); immunoglobulin-like activity (such as, for example, the ability to bind antigens or complement); and the ability to act as an antigen in a vaccine composition to raise an immune response against such protein or another material or entity which is cross-reactive with such protein.
ADMINISTRATION AND DOSING A protein of the present invention (from whatever source derived, including without limitation from recombinant and non-recombinant sources) may be used in a pharmaceutical composition when combined with a pharmaceutically acceptable carrier. Such a composition may also contain (in addition to protein and a carrier) diluents, fillers, salts, buffers, stabilizers, solubilizers, and other materials well known in the art. The term "pharmaceutically acceptable" means a non-toxic material that does not interfere with the effectiveness of the biological activity of the active ingredient(s). The characteristics of the carrier will depend on the route of administration. The pharmaceutical composition of the invention may also contain cytokines, lymphokines, or other hematopoietic factors such as M-CSF, GM-CSF, TNF, IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-11, IL-12, IL-13, IL-14, IL-15, IFN, TNFO, TNFl, TNF2, G-CSF, Meg-CSF, thrombopoietin, stem cell factor, and erythropoietin. The pharmaceutical composition may further contain other agents which either enhance the activity of the protein or compliment its activity or use in treatment. Such additional factors and/or agents may be included in the pharmaceutical composition to produce a synergistic effect with protein of the invention, or to minimize side effects. Conversely, protein of the present invention may be included in formulations of the particular cytokine, lymphokine, other hematopoietic factor, thrombolytic or anti-thrombotic factor, or anti-inflammatory agent to minimize side effects of the cytokine, lymphokine, other hematopoietic factor, thrombolytic or anti-thrombotic factor, or anti-inflammatory agent. A protein of the present invention may be active in multimers (e.g., heterodimers or homodimers) or complexes with itself or other proteins. As a result, pharmaceutical compositions of the invention may comprise a protein of the invention in such multimeric or complexed form. The pharmaceutical composition of the invention may be in the form of a complex of the protein(s) of present invention along with protein or peptide antigens. The protein and/or peptide antigen will deliver a stimulatory signal to both B and T lymphocytes. B lymphocytes will respond to antigen through their surface immunoglobulin receptor. T lymphocytes will respond to antigen through the T cell receptor (TCR) following presentation of the antigen by MHC proteins. MHC and structurally related proteins including those encoded by class I and class II MHC genes on host cells will serve to present the peptide antigen(s) to T lymphocytes. The antigen components could also be supplied as purified MHC-peptide complexes alone or with co-stimulatory molecules that can directly signal T cells. Alternatively antibodies able to bind surface immunolgobulin and other molecules on B cells as well as antibodies able to bind the TCR and other molecules on T cells can be combined with the pharmaceutical composition of the invention.
The pharmaceutical composition of the invention may be in the form of a liposome in which protein of the present invention is combined, in addition to other pharmaceutically acceptable carriers, with amphipathic agents such as lipids which exist in aggregated form as micelles, insoluble monolayers, liquid crystals, or lamellar layers in aqueous solution. Suitable lipids for liposomal formulation include, without limitation, monoglycerides, diglycerides, sulfatides, lysolecithin, phospholipids, saponin, bile acids, and the like. Preparation of such liposomal formulations is within the level of skill in the art, as disclosed, for example, in U.S. Patent No. 4,235,871; U.S. Patent No. 4,501,728; U.S. Patent No. 4,837,028; and U.S. Patent No. 4,737,323, all of which are incorporated herein by reference.
As used herein, the term "therapeutically effective amount" means the total amount of each active component of the pharmaceutical composition or method that is sufficient to show a meaningful patient benefit, i.e., treatment, healing, prevention or amelioration of the relevant medical condition, or an increase in rate of treatment, healing, prevention or amelioration of such conditions. When applied to an individual active ingredient, administered alone, the term refers to that ingredient alone. When applied to a combination, the term refers to combined amounts of the active ingredients that result in the therapeutic effect, whether administered in combination, serially or simultaneously.
In practicing the method of treatment or use of the present invention, a therapeutically effective amount of protein of the present invention is administered to a mammal having a condition to be treated. Protein of the present invention may be administered in accordance with the method of the invention either alone or in combination with other therapies such as treatments employing cytokines, lymphokines or other hematopoietic factors. When co-administered with one or more cytokines, lymphokines or other hematopoietic factors, protein of the present invention may be administered either simultaneously with the cytokine(s), lymphokine(s), other hematopoietic factor(s), thrombolytic or anti-thrombotic factors, or sequentially. If administered sequentially, the attending physician will decide on the appropriate sequence of administering protein of the present invention in combination with cytokine(s), lymphokine(s), other hematopoietic factor(s), thrombolytic or anti-thrombotic factors.
Administration of protein of the present invention used in the pharmaceutical composition or to practice the method of the present invention can be carried out in a variety of conventional ways, such as oral ingestion, inhalation, topical application or cutaneous, subcutaneous, intraperitoneal, parenteral or intravenous injection. Intravenous administration to the patient is preferred.
When a therapeutically effective amount of protein of the present invention is administered orally, protein of the present invention will be in the form of a tablet, capsule, powder, solution or elixir. When administered in tablet form, the pharmaceutical composition of the invention may additionally contain a solid carrier such as a gelatin or an adjuvant. The tablet, capsule, and powder contain from about 5 to 95% protein of the present invention, and preferably from about 25 to 90% protein of the present invention. When administered in liquid form, a liquid carrier such as water, petroleum, oils of animal or plant origin such as peanut oil, mineral oil, soybean oil, or sesame oil, or synthetic oils may be added. The liquid form of the pharmaceutical composition may further contain physiological saline solution, dextrose or other saccharide solution, or glycols such as ethylene glycol, propylene glycol or polyethylene glycol. When administered in liquid form, the pharmaceutical composition contains from about 0.5 to 90% by weight of protein of the present invention, and preferably from about 1 to 50% protein of the present invention. When a therapeutically effective amount of protein of the present invention is administered by intravenous, cutaneous or subcutaneous injection, protein of the present invention will be in the form of a pyrogen-free, parenterally acceptable aqueous solution. The preparation of such parenterally acceptable protein solutions, having due regard to pH, isotonicity, stability, and the like, is within the skill in the art. A preferred pharmaceutical composition for intravenous, cutaneous, or subcutaneous injection should contain, in addition to protein of the present invention, an isotonic vehicle such as Sodium Chloride Injection, Ringer's Injection, Dextrose Injection, Dextrose and Sodium Chloride Injection, Lactated Ringer's Injection, or other vehicle as known in the art. The pharmaceutical composition of the present invention may also contain stabilizers, preservatives, buffers, antioxidants, or other additives known to those of skill in the art. The amount of protein of the present invention in the pharmaceutical composition of the present invention will depend upon the nature and severity of the condition being treated, and on the nature of prior treatments which the patient has undergone. Ultimately, the attending physician will decide the amount of protein of the present invention with which to treat each individual patient. Initially, the attending physician will administer low doses of protein of the present invention and observe the patient's response. Larger doses of protein of the present invention may be administered until the optimal therapeutic effect is obtained for the patient, and at that point the dosage is not increased further. It is contemplated that the various pharmaceutical compositions used to practice the method of the present invention should contain about 0.01 μg to about 100 mg (preferably about O.lng to about 10 mg, more preferably about 0.1 μg to about 1 mg) of protein of the present invention per kg body weight.
The duration of intravenous therapy using the pharmaceutical composition of the present invention will vary, depending on the severity of the disease being treated and the condition and potential idiosyncratic response of each individual patient. It is contemplated that the duration of each application of the protein of the present invention will be in the range of 12 to 24 hours of continuous intravenous administration. Ultimately the attending physician will decide on the appropriate duration of intravenous therapy using the pharmaceutical composition of the present invention.
Protein of the invention may also be used to immunize animals to obtain polyclonal and monoclonal antibodies which specifically react with the protein. Such antibodies may be obtained using either the entire protein or fragments thereof as an immunogen. The peptide immunogens additionally may contain a cysteine residue at the carboxyl terminus, and are conjugated to a hapten such as keyhole limpet hemocyanin
(KLH). Methods for synthesizing such peptides are known in the art, for example, as in R.P. Merrifield, J. Amer.Chem.Soc. 85, 2149-2154 (1963); J.L. Krstenansky, et al, FEBS Lett. 211, 10 (1987). Monoclonal antibodies binding to the protein of the invention may be useful diagnostic agents for the immunodetection of the protein. Neutralizing monoclonal antibodies binding to the protein may also be useful therapeutics for both conditions associated with the protein and also in the treatment of some forms of cancer where abnormal expression of the protein is involved. In the case of cancerous cells or leukemic cells, neutralizing monoclonal antibodies against the protein may be useful in detecting and preventing the metastatic spread of the cancerous cells, which may be mediated by the protein.
For compositions of the present invention which are useful for bone, cartilage, tendon or ligament regeneration, the therapeutic method includes administering the composition topically, systematically, or locally as an implant or device. When administered, the therapeutic composition for use in this invention is, of course, in a pyrogen-free, physiologically acceptable form. Further, the composition may desirably be encapsulated or injected in a viscous form for delivery to the site of bone, cartilage or tissue damage. Topical administration may be suitable for wound healing and tissue repair. Therapeutically useful agents other than a protein of the invention which may also optionally be included in the composition as described above, may alternatively or additionally, be administered simultaneously or sequentially with the composition in the methods of the invention. Preferably for bone and /or cartilage formation, the composition would include a matrix capable of delivering the protein-containing composition to the site of bone and /or cartilage damage, providing a structure for the developing bone and cartilage and optimally capable of being resorbed into the body.
Such matrices may be formed of materials presently in use for other implanted medical applications.
The choice of matrix material is based on biocompatibility, biodegradability, mechanical properties, cosmetic appearance and interface properties. The particular application of the compositions will define the appropriate formulation. Potential matrices for the compositions may be biodegradable and chemically defined calcium sulfate, tricalciumphosphate, hydroxyapatite, polylactic acid, polyglycolic acid and polyanhydrides. Other potential materials are biodegradable and biologically well- defined, such as bone or dermal collagen. Further matrices are comprised of pure proteins or extracellular matrix components. Other potential matrices are nonbiodegradable and chemically defined, such as sintered hydroxapatite, bioglass, aluminates, or other ceramics. Matrices may be comprised of combinations of any of the above mentioned types of material, such as polylactic acid and hydroxyapatite or collagen and tricalciumphosphate. The bioceramics may be altered in composition, such as in calcium- aluπiinate-phosphate and processing to alter pore size, particle size, particle shape, and biodegradability.
Presently preferred is a 50:50 (mole weight) copolymer of lactic acid and glycolic acid in the form of porous particles having diameters ranging from 150 to 800 microns. In some applications, it will be useful to utilize a sequestering agent, such as carboxymethyl cellulose or autologous blood clot, to prevent the protein compositions from disassociating from the matrix.
A preferred family of sequestering agents is cellulosic materials such as alkylcelluloses (including hydroxyalkylcelluloses), including methylcellulose, ethylcellulose, hydroxyethylcellulose, hydroxypropylcellulose, hydroxypropyl- methylcellulose, and carboxymethylcellulose, the most preferred being cationic salts of carboxymethylcellulose (CMC). Other preferred sequestering agents include hyaluronic acid, sodium alginate, poly(ethylene glycol), polyoxyethylene oxide, carboxyvinyl polymer and poly(vinyl alcohol). The amount of sequestering agent useful herein is 0.5-20 wt%, preferably 1-10 wt% based on total formulation weight, which represents the amount necessary to prevent desorbtion of the protein from the polymer matrix and to provide appropriate handling of the composition, yet not so much that the progenitor cells are prevented from infiltrating the matrix, thereby providing the protein the opportunity to assist the osteogenic activity of the progenitor cells. In further compositions, proteins of the invention may be combined with other agents beneficial to the treatment of the bone and /or cartilage defect, wound, or tissue in question. These agents include various growth factors such as epidermal growth factor (EGF), platelet derived growth factor (PDGF), transforming growth factors (TGF- and TGF-β), and insulin-like growth factor (IGF). The therapeutic compositions are also presently valuable for veterinary applications. Particularly domestic animals and thoroughbred horses, in addition to humans, are desired patients for such treatment with proteins of the present invention. The dosage regimen of a protein-containing pharmaceutical composition to be used in tissue regeneration will be determined by the attending physician considering various factors which modify the action of the proteins, e.g., amount of tissue weight desired to be formed, the site of damage, the condition of the damaged tissue, the size of a wound, type of damaged tissue (e.g., bone), the patient's age, sex, and diet, the severity of any infection, time of administration and other clinical factors. The dosage may vary with the type of matrix used in the reconstitution and with inclusion of other proteins in the pharmaceutical composition. For example, the addition of other known growth factors, such as IGF I (insulin like growth factor I), to the final composition, may also effect the dosage. Progress can be monitored by periodic assessment of tissue /bone growth and /or repair, for example, X-rays, histomorphometric determinations and tetracycline labeling.
Polynucleotides of the present invention can also be used for gene therapy. Such polynucleotides can be introduced either in vivo or ex vivo into cells for expression in a mammalian subject. Polynucleotides of the invention may also be administered by other known methods for introduction of nucleic acid into a cell or organism (including, without limitation, in the form of viral vectors or naked DNA).
Cells may also be cultured ex vivo in the presence of proteins of the present invention in order to proliferate or to produce a desired effect on or activity in such cells. Treated cells can then be introduced in vivo for therapeutic purposes.
Patent and literature references cited herein are incorporated by reference as if fully set forth.
SEQUENCE LISTING
(1) GENERAL INFORMATION:
(i) APPLICANT: Jacobs, Kenneth McCoy, John M. LaVallie, Edward R. Racie, Lisa A. Merberg, David Treacy, Maurice Spaulding, Vikki Agostino, Michael J.
(ii) TITLE OF INVENTION: SECRETED PROTEINS AND POLYNUCLEOTIDES ENCODING THEM
(iii) NUMBER OF SEQUENCES: 25
(iv) CORRESPONDENCE ADDRESS:
(A) ADDRESSEE: Genetics Institute, Inc.
(B) STREET: 87 CambridgePark Drive
(C) CITY: Cambridge
(D) STATE: MA
(E) COUNTRY: U.S.A.
(F) ZIP: 02140
(v) COMPUTER READABLE FORM:
(A) MEDIUM TYPE: Floppy disk
(B) COMPUTER: IBM PC compatible
(C) OPERATING SYSTEM: PC-DOS/MS-DOS
(D) SOFTWARE: PatentIn Release #1.0, Version #1.30
(vi) CURRENT APPLICATION DATA:
(A) APPLICATION NUMBER:
(B) FILING DATE:
(C) CLASSIFICATION:
(viii) ATTORNEY/AGENT INFORMATION:
(A) NAME: Sprunger, Suzanne A.
(B) REGISTRATION NUMBER: 41,323
(ix) TELECOMMUNICATION INFORMATION:
(A) TELEPHONE: (617) 498-8284
(B) TELEFAX: (617) 876-5851
(2) INFORMATION FOR SEQ ID NO : 1 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1480 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 1 :
AGGCGCCCTC CCTTCCTGAG GAGCTGTTGG CCTGGGTGGG CAGGAACTGC AGTATGGCCA 60
TGGGCTGAGC AGGCTGAGCA CCTCAGCCTT TAGGGCTTAT GGCCAGGGGA CACTGTATGA 120
CTCTCCTCTC CTGCAGGTGT CTATCCACCT GGGGTATGGC ATCTACCGAC CTGTCTCCCT 180
GGGGTCACAT GCTTTGTTTC CATTCTTGTC CTGGCTGGAC CAGCCACTGT GGGACCAACA 240
CCCCTCCCAC ACTCCCCCAG ACTGCTCGTC TATCACCAGG ATCGCTTTGT ACTTTGTGCA 300
AAAGGGTCTG GCTGTCCCTT GCTGTTTTCA TCTCTGCCAA GCCTATTGTG CCTCTGGCTG 360
CTGTATGTGT GCGCGTGCAC GTGTGTGTGT TTCATCTGTT CATTCACTGC ACAAGATATT 420
TATTGAGTGC CCACTACGTG CCAGGCACTG TTGCTGAGTT CCTGTGGGTG TGTCTCTCGA 480
TGCCACTCCT GCTTCTCTGG GGGCCTCTTT CTGTGCTTCT CTTTGTCCCC AAATTGCTAC 540
CTCTTTGTCA GTCTGGGTGT CTCAGGTTCT GTGTGTCCTT GTGTGCATTT CTGTCTCTCT 600
CTGTCCTCGT CTCTCTGCAA GGCCCTCTAT TTCTCTCTTT CTTGGTGTCT GTCCTTTGCC 660
CCCTGTGCCC TCTGGATTCT CTGGGTCTAT GTAGGCCCCT GGTCTGCCCT GGGCTCATCA 720
GCCTTCCTGA CCTCCTCCTG CCCTCCCCTT CACTCCCTCC CTGGCTCTGC CAGTCGGTTC 780
CCACGGAGCC ATTTTTAGCT CTGATCAGCA TGGGAATGTG CCTCGGCCTC CAAGGGGCTT 840
TGTCCTGGTG CCCCCGCCCC TGGTCCCAAC CTGATCCCAC GAGGGAGTTG GGACAGGAGG 900
ATTGATGGTG CTCCCCTTCC TGCCAGCGTC AGAGGCCCTG GAGAGGGGCT GTCCATGGCA 960
GCTGGTCTTT ATTCCTCCCT CATGAGCACA GGGTCGGGGG GTCCCCATTC TTGGAAGAGG 1020
TTGAGAAGAC TCCTGGGCTT CAGCCTCTCC CACCCAGCCC TGCCCCTCAC CTGCCTGCCC 1080
TCCCCTCCCC CACTCTATAC TAGGGACTGG ATCTCAGCCT CTGATCAGTT TCACAAAGTT 1140
TGTTCCCTAA GGAAATCAAA TCCCATTGTC ACCTAACTCT GAAGATCTAA ATAGCCCTTG 1200
GATCAGTACG GGAACCCCAA ATCCCACAGG GCCAGATGTG GAGTCTGTGT CTGCCCCCGT 1260
CTTCTCTCCA TCCTCAAAGC CCCCACTTCT CTCCAGGCTG TTTCTTTTTT TATGACTGTA 1320
AACATAGATA GTGCTTTATT TTGTTAATAA TAAGATAATG ATGAGTAACT TAACCAGCAC 1380
ATTTCTCCTG TTTACACTCG GGGGATTTTT TTGTTTTCTG ATGACATAAT AAAGACAGAT 1440 CATTTCAGAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 1480
(2) INFORMATION FOR SEQ ID NO : 2 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 268 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 2 :
Met Ala Arg Gly His Cys Met Thr Leu Leu Ser Cys Arg Cys Leu Ser 1 5 10 15
Thr Trp Gly Met Ala Ser Thr Asp Leu Ser Pro Trp Gly His Met Leu 20 25 30
Cys Phe His Ser Cys Pro Gly Trp Thr Ser His Cys Gly Thr Asn Thr 35 40 45
Pro Pro Thr Leu Pro Gin Thr Ala Arg Leu Ser Pro Gly Ser Leu Cys 50 55 60
Thr Leu Cys Lys Arg Val Trp Leu Ser Leu Ala Val Phe lie Ser Ala 65 70 75 80
Lys Pro lie Val Pro Leu Ala Ala Val Cys Val Arg Val His Val Cys 85 90 95
Val Phe His Leu Phe lie His Cys Thr Arg Tyr Leu Leu Ser Ala His 100 105 110
Tyr Val Pro Gly Thr Val Ala Glu Phe Leu Trp Val Cys Leu Ser Met 115 120 125
Pro Leu Leu Leu Leu Trp Gly Pro Leu Ser Val Leu Leu Phe Val Pro 130 135 140
Lys Leu Leu Pro Leu Cys Gin Ser Gly Cys Leu Arg Phe Cys Val Ser 145 150 155 160
Leu Cys Ala Phe Leu Ser Leu Ser Val Leu Val Ser Leu Gin Gly Pro 165 170 175
Leu Phe Leu Ser Phe Leu Val Ser Val Leu Cys Pro Leu Cys Pro Leu 180 185 190
Asp Ser Leu Gly Leu Cys Arg Pro Leu Val Cys Pro Gly Leu lie Ser 195 200 205 Leu Pro Asp Leu Leu Leu Pro Ser Pro Ser Leu Pro Pro Trp Leu Cys 210 215 220
Gin Ser Val Pro Thr Glu Pro Phe Leu Ala Leu lie Ser Met Gly Met 225 230 235 240
Cys Leu Gly Leu Gin Gly Ala Leu Ser Trp Cys Pro Arg Pro Trp Ser 245 250 255
Gin Pro Asp Pro Thr Arg Glu Leu Gly Gin Glu Asp 260 265
(2) INFORMATION FOR SEQ ID NO : 3 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1436 base pairs
(B) TYPE: nucleic acid
( C ) STRANDEDNESS : double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 3 :
CCCGGCGGCT CCTGGAACCC CGGTTCGCGG CGATGCCAGC CACCCCAGCG AAGCCGCCGC 60
AGTTCAGTGC TTGGATAATT TGAAAGTACA ATAGTTGGTT TCCCTGTCCA CCCGCCCCAC 120
TTCGCTTGCC ATCACAGCAC GCCTATCGGA TGTGAGAGGA GAAGTCCCGC TGCTCGGGCA 180
CTGTCTATAT ACGCCTAACA CCTACATATA TTTTAAAAAC ATTAAATATA ATTAACAATC 240
AAAAGAAAGA GGAGAAAGGA AGGGAAGCAT TACTGGGTTA CTATGCACTT GCGACTGATT 300
TCTTGGCTTT TTATCATTTT GAACTTTATG GAATACATCG GCAGCCAAAA CGCCTCCCGG 360
GGAAGGCGCC AGCGAAGAAT GCATCCTAAC GTTAGTCAAG GCTGCCAAGG AGGCTGTGCA 420
ACATGCTCAG ATTACAATGG ATGTTTGTCA TGTAAGCCCA GACTATTTTT TGCTCTGGAA 480
AGAATTGGCA TGAAGCAGAT TGGAGTATGT CTCTCTTCAT GTCCAAGTGG ATATTATGGA 540
ACTCGATATC CAGATATAAA TAAGTGTACA AAATGCAAAG CTGACTGTGA TACCTGTTTC 600
AACAAAAATT TCTGCACAAA ATGTAAAAGT GGATTTTACT TACACCTTGG AAAGTGCCTT 660
GACAATTGCC CAGAAGGGTT GGAAGCCAAC AACCATACTA TGGAGTGTGT CAGTATTGTG 720
CACTGTGAGG TCAGTGAATG GAATCCTTGG AGTCCATGCA CGAAGAAGGG AAAAACATGT 780
GGCTTCAAAA GAGGGACTGA AACACGGGTC CGAGAAATAA TACAGCATCC TTCAGCAAAG 840 GGTAACCTGT GTCCCCCAAC AAATGAGACA AGAAAGTGTA CAGTGCAAAG GAAGAAGTGT 900
CAGAAGGGAG AACGAGGAAA AAAAGGAAGG GAGAGGAAAA GAAAAAAACC TAATAAAGGA 960
GAAAGTAAAG AAGCAATACC TGACAGCAAA AGTCTGGAAT CCAGCAAAGA AATCCCAGAG 1020
CAACGAGAAA ACAAACAGCA GCAGAAGAAG CGAAAAGTCC AAGATAAACA GAAATCGGGG 1080
ATTGAAGTCA CCCTAGCTGA AGGCCTCACC AGTGTTTCAC AGAGGACACA GCCCACCCCT 1140
TGCAGGAGGA GGTATCTCTG AGTGTGCAGC ACAGAATCGC ATGACCCACC TTAACCTTCC 1200
TGTTGTCATG GAAGGATGCA CGGCTGCTCT GTCCACTGTG ATTCCTAGCC CTCTCAAGAT 1260
CACTGCTTTC TGAAGAATTT GCAATGACTC TGGCTTCTGG CTGCTTATCT CTGGACACCC 1320
GTTCTCCACC AGTTGTACAG TTCATGTAAT CTACTTGGCT TAATTGATTT TCCACTTCTC 1380
TCTTCCTCTT CTAAGATATA AACATTTTAA ATGATTTAAA AAAAAAAAAA AAAAAA 1436 (2) INFORMATION FOR SEQ ID NO : 4 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 292 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 4 :
Met His Leu Arg Leu lie Ser Trp Leu Phe lie lie Leu Asn Phe Met 1 5 10 15
Glu Tyr lie Gly Ser Gin Asn Ala Ser Arg Gly Arg Arg Gin Arg Arg 20 25 30
Met His Pro Asn Val Ser Gin Gly Cys Gin Gly Gly Cys Ala Thr Cys 35 40 45
Ser Asp Tyr Asn Gly Cys Leu Ser Cys Lys Pro Arg Leu Phe Phe Ala 50 55 60
Leu Glu Arg lie Gly Met Lys Gin lie Gly Val Cys Leu Ser Ser Cys 65 70 75 80
Pro Ser Gly Tyr Tyr Gly Thr Arg Tyr Pro Asp lie Asn Lys Cys Thr 85 90 95
Lys Cys Lys Ala Asp Cys Asp Thr Cys Phe Asn Lys Asn Phe Cys Thr 100 105 110 Lys Cys Lys Ser Gly Phe Tyr Leu His Leu Gly Lys Cys Leu Asp Asn 115 120 125
Cys Pro Glu Gly Leu Glu Ala Asn Asn His Thr Met Glu Cys Val Ser 130 135 140 lie Val His Cys Glu Val Ser Glu Trp Asn Pro Trp Ser Pro Cys Thr 145 150 155 160
Lys Lys Gly Lys Thr Cys Gly Phe Lys Arg Gly Thr Glu Thr Arg Val 165 170 175
Arg Glu lie lie Gin His Pro Ser Ala Lys Gly Asn Leu Cys Pro Pro 180 185 190
Thr Asn Glu Thr Arg Lys Cys Thr Val Gin Arg Lys Lys Cys Gin Lys 195 200 205
Gly Glu Arg Gly Lys Lys Gly Arg Glu Arg Lys Arg Lys Lys Pro Asn 210 215 220
Lys Gly Glu Ser Lys Glu Ala lie Pro Asp Ser Lys Ser Leu Glu Ser 225 230 235 240
Ser Lys Glu lie Pro Glu Gin Arg Glu Asn Lys Gin Gin Gin Lys Lys 245 250 255
Arg Lys Val Gin Asp Lys Gin Lys Ser Gly lie Glu Val Thr Leu Ala 260 265 270
Glu Gly Leu Thr Ser Val Ser Gin Arg Thr Gin Pro Thr Pro Cys Arg 275 280 285
Arg Arg Tyr Leu 290
( 2 ) INFORMATION FOR SEQ ID NO : 5 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 2322 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 5 : GGTTAAGAGC AGATTAGAAC AGAAATCAGG AGAACTTGGG AAGAAGATCA CTGAGTTAAC 60 ATTGAAAAAT CAGACACTAC AAAAGGAAAT TGAAAAAGTT TATTTGGATA ATAAGCTCCT 120 CAAGGAGCAA GCACATAACT TAACAATTGA AATGAAAAAT CATTATGTTC CTTTAAAAGT 180
AAGTGAAGAC ATGAAAAAGT CACATGATGC AATTATTGAT GATCTTAATA GAAAGCTTTT 240
AGATGTAACA CAAAAATATA CAGAAAAGAA GTTGGAAATG GAGAAATTGC TACTGGAAAA 300
TGACAGCTTA AGTAAGGATG TAAGCCGCCT AGAAACTGTG TTTGTACCTC CTGAGAAACA 360
TGAAAAAGAG ATAATAGCTC TGAAATCCAA TATTGTTGAA CTTAAGAAAC AGCTGTCTGA 420
ACTTAAGAAA AAATGTGGTG AAGACCAGGA GAAAATACAC GCTCTCACAT CTGAAAACAC 480
TAACTTGAAG AAGATGATGA GTAATCAGTA TGTGCCAGTT AAAACCCATG AAGAGGTTAA 540
AATGACACTG AATGACACGT TAGCCAAAAC TAACAGAGAA TTATTAGATG TGAAGAAAAA 600
ATTTGAAGAT ATAAATCAGG AATTTGTAAA AATAAAAGAT AAGAATGAAA TATTAAAAAG 660
AAACCTGGAA AACACTCAGA ACCAAATAAA AGCTGAGTAC ATCAGCCTGG CAGAGCACGA 720
GGCAAAGATG AGCTCGCTAA GTCAGAGCAT GAGAAAGGTG CAGGATAGTA ATGCTGAAAT 780
CTTGGCCAAC TACAGAAAAG GCCAAGAAGA GATTGTGACA CTGCATGCCG AAATTAAAGC 840
CCAGAAGAAG GAGCTCGACA CAATACAAGA ATGCATTAAG GTAAAATATG CCCCAATTGT 900
CAGCTTTGAG GAGTGCGAGA GAAAATTTAA AGCAACAGAG AAAGAACTAA AAGACCAGTT 960
ATCAGAGCAG ACACAAAAGT ATAGTGTCAG TGAAGAAGAA GTCAAGAAAA ACAAGCAAGA 1020
GAATGACAAG TTAAAGAAGG AGATTTTTAC CCTTCAGAAA GATTTGAGAG ATAAGACAGT 1080
TCTCATTGAG AAGTCTCATG AAATGGAAAG AGCATTAAGC AGAAAAACAG ACGAGCTAAA 1140
CAAACAGTTA AAAGACTTGT CACAGAAATA CACGGAAGTA AAGAATGTGA AAGAGAAGCT 1200
AGTAGAAGAA AATGCCAAAC AGACTTCTGA GATACTTGCA GTGCAAAATC TTTTGCAAAA 1260
ACAACATGTT CCATTGGAAC AGGTTGAGGC TCTGAAAAAA TCTCTTAATG GCACAATTGA 1320
AAATCTAAAG GAAGAACTGA AGAGTATGCA AAGGTGTTAC GAGAAAGAGC AGCAGACAGT 1380
GACCAAACTG CATCAATTGT TGGAGAATCA AAAGAACTCT TCTGTACCCC TGGCAGAGCA 1440
TTTGCAGATT AAAGAAGCAT TTGAGAAAGA AGTTGGAATC ATAAAAGCCA GCTTGAGAGA 1500
AAAGGAAGAA GAAAGCCAAA ACAAAATGGA AGAAGTCTCC AAACTTCAGT CGGAGGTTCA 1560
GAATACTAAA CAAGCATTAA AAAAATTAGA GACTAGAGAG GTAGTTGACT TGTCTAAATA 1620
TAAAGCAACA AAAAGTGATT TGGAGACACA GATTTCTAGC TTAAATGAAA AATTGGCCAA 1680
TCTGAATAGA AAGTATGAGG AAGTATGTGA GGAAGTTTTG CATGCCAAAA AGAAGGAAAT 1740
ATCTGCAAAA GATGAGAAGG AATTACTGCA TTTCAGCATT GAGCAAGAAA TTAAGGATCA 1800 GAAGGAACGA TGTGATAAGT CCTTAACAAC AATCACAGAG TTACAAAGAA GAATACAAGA 1860
ATCTGCTAAA CAAATAGAAG CAAAAGATAA TAAGATAACT GAACTGCTTA ATGATGTGGA 1920
AAGATTAAAA CAGGCACTCA ATGGCCTTTC CCAACTCACC TACACAAGTG GGAACCCCAC 1980
CAAGAGGCAG AGCCAGCTGA TTGACACTCT GCAGCACCAA GTGAAATCTC TGGAGCAACA 2040
GCTGGCCGAT GCTGACAGAC AGCACCAAGA AGTAATTGCA ATTTATCGGA CACACCTTCT 2100
TAGTGCTGCA CAGGGTCACA TGGATGAAGA TGTTCAGGAG GCTCTGCTCC AGATCATACA 2160
AATGCGGCAG GGGCTTGTGT GCTAGCCGTT AGCACTGACT GCCAGTATCT GTTTTATCTT 2220
GCTGGTGCTG AACATTCTTT GTGCAACTCC ATGGTCTTTC TGGGCCTTAC TGTGCTGGTA 2280
TAATTAAAAT AAAATATATT TTGTTCTAAA AAAAAAAAAA AA 2322 (2) INFORMATION FOR SEQ ID NO: 6:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 677 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 6 :
Met Lys Asn His Tyr Val Pro Leu Lys Val Ser Glu Asp Met Lys Lys 1 5 10 15
Ser His Asp Ala lie lie Asp Asp Leu Asn Arg Lys Leu Leu Asp Val 20 25 30
Thr Gin Lys Tyr Thr Glu Lys Lys Leu Glu Met Glu Lys Leu Leu Leu 35 40 45
Glu Asn Asp Ser Leu Ser Lys Asp Val Ser Arg Leu Glu Thr Val Phe 50 55 60
Val Pro Pro Glu Lys His Glu Lys Glu lie lie Ala Leu Lys Ser Asn 65 70 75 80 lie Val Glu Leu Lys Lys Gin Leu Ser Glu Leu Lys Lys Lys Cys Gly 85 90 95
Glu Asp Gin Glu Lys lie His Ala Leu Thr Ser Glu Asn Thr Asn Leu 100 105 110
Lys Lys Met Met Ser Asn Gin Tyr Val Pro Val Lys Thr His Glu Glu 115 120 125
Val Lys Met Thr Leu Asn Asp Thr Leu Ala Lys Thr Asn Arg Glu Leu 130 135 140
Leu Asp Val Lys Lys Lys Phe Glu Asp lie Asn Gin Glu Phe Val Lys 145 150 155 160 lie Lys Asp Lys Asn Glu lie Leu Lys Arg Asn Leu Glu Asn Thr Gin 165 170 175
Asn Gin lie Lys Ala Glu Tyr lie Ser Leu Ala Glu His Glu Ala Lys 180 185 190
Met Ser Ser Leu Ser Gin Ser Met Arg Lys Val Gin Asp Ser Asn Ala 195 200 205
Glu lie Leu Ala Asn Tyr Arg Lys Gly Gin Glu Glu lie Val Thr Leu 210 215 220
His Ala Glu lie Lys Ala Gin Lys Lys Glu Leu Asp Thr lie Gin Glu 225 230 235 240
Cys lie Lys Val Lys Tyr Ala Pro lie Val Ser Phe Glu Glu Cys Glu 245 250 255
Arg Lys Phe Lys Ala Thr Glu Lys Glu Leu Lys Asp Gin Leu Ser Glu 260 265 270
Gin Thr Gin Lys Tyr Ser Val Ser Glu Glu Glu Val Lys Lys Asn Lys 275 280 285
Gin Glu Asn Asp Lys Leu Lys Lys Glu lie Phe Thr Leu Gin Lys Asp 290 295 300
Leu Arg Asp Lys Thr Val Leu lie Glu Lys Ser His Glu Met Glu Arg 305 310 315 320
Ala Leu Ser Arg Lys Thr Asp Glu Leu Asn Lys Gin Leu Lys Asp Leu 325 330 335
Ser Gin Lys Tyr Thr Glu Val Lys Asn Val Lys Glu Lys Leu Val Glu 340 345 350
Glu Asn Ala Lys Gin Thr Ser Glu lie Leu Ala Val Gin Asn Leu Leu 355 360 365
Gin Lys Gin His Val Pro Leu Glu Gin Val Glu Ala Leu Lys Lys Ser 370 375 380
Leu Asn Gly Thr lie Glu Asn Leu Lys Glu Glu Leu Lys Ser Met Gin 385 390 395 400
Arg Cys Tyr Glu Lys Glu Gin Gin Thr Val Thr Lys Leu His Gin Leu 405 410 415 Leu Glu Asn Gin Lys Asn Ser Ser Val Pro Leu Ala Glu His Leu Gin 420 425 430 lie Lys Glu Ala Phe Glu Lys Glu Val Gly lie lie Lys Ala Ser Leu 435 440 445
Arg Glu Lys Glu Glu Glu Ser Gin Asn Lys Met Glu Glu Val Ser Lys 450 455 460
Leu Gin Ser Glu Val Gin Asn Thr Lys Gin Ala Leu Lys Lys Leu Glu 465 470 475 480
Thr Arg Glu Val Val Asp Leu Ser Lys Tyr Lys Ala Thr Lys Ser Asp 485 490 495
Leu Glu Thr Gin lie Ser Ser Leu Asn Glu Lys Leu Ala Asn Leu Asn 500 505 510
Arg Lys Tyr Glu Glu Val Cys Glu Glu Val Leu His Ala Lys Lys Lys 515 520 525
Glu lie Ser Ala Lys Asp Glu Lys Glu Leu Leu His Phe Ser lie Glu 530 535 540
Gin Glu lie Lys Asp Gin Lys Glu Arg Cys Asp Lys Ser Leu Thr Thr 545 550 555 560 lie Thr Glu Leu Gin Arg Arg lie Gin Glu Ser Ala Lys Gin lie Glu 565 570 575
Ala Lys Asp Asn Lys lie Thr Glu Leu Leu Asn Asp Val Glu Arg Leu 580 585 590
Lys Gin Ala Leu Asn Gly Leu Ser Gin Leu Thr Tyr Thr Ser Gly Asn 595 600 605
Pro Thr Lys Arg Gin Ser Gin Leu lie Asp Thr Leu Gin His Gin Val 610 615 620
Lys Ser Leu Glu Gin Gin Leu Ala Asp Ala Asp Arg Gin His Gin Glu 625 630 635 640
Val lie Ala lie Tyr Arg Thr His Leu Leu Ser Ala Ala Gin Gly His 645 650 655
Met Asp Glu Asp Val Gin Glu Ala Leu Leu Gin lie lie Gin Met Arg 660 665 670
Gin Gly Leu Val Cys 675 NFORMATION FOR SEQ ID NO : 7 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 2041 base pairs (B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 7 :
TCTCCCCCCT CCCCGACACA CACTCACAGG CCGGGCATTG ATGGTAATGT ATGCGAGGAA 60
ACAGCAGAGA CTCAGTGATG GCTGTCACGA CCGGAGGGGG GACTCGCAGC CTTACCAGGC 120
ACTTAAGTAT TCATCGAAGA GTCACCCCAG TAGCGGTGAT CACAGACATG AAAAGATGCG 180
AGACGCCGGA GATCCTTCAC CACCAAATAA AATGTTGCGG AGATCTGATA GTCCTGAAAA 240
CAAATACAGT GACAGCACAG GTCACAGTAA GGCCAAAAAT GTGCATACTC ACAGAGTTAG 300
AGAGAGGGAT GGTGGGACCA GTTACTCTCC ACAAGAAAAT TCACACAACC ACAGTGCTCT 360
TCATAGTTCA AATTCACATT CTTCTAATCC AAGCAATAAC CCAAGCAAAA CTTCAGATGC 420
ACCTTATGAT TCTGCAGATG ACTGGTCTGA GCATATTAGC TCTTCTGGGA AAAAGTACTA 480
CTACAATTGT CGAACAGAAG TTTCACAATG GGAAAAACCA AAAGAGTGGC TTGAAAGAGA 540
ACAGAGACAA AAAGAAGCAA ACAAGATGGC AGTCAACAGC TTCCCAAAAG ATAGGGATTA 600
CAGAAGAGAG GTGATGCAAG CAACAGCCAC TAGTGGGTTT GCCAGTGGAA AATCTACATC 660
AGGAGACAAA CCCGTATCAC ATTCTTGCAC AACTCCTTCC ACGTCTTCTG CCTCTGGACT 720
GAACCCCACA TCTGCACCTC CAACATCTGC TTCAGCGGTC CCTGTTTCTC CTGTTCCACA 780
GTCGCCAATA CCTCCCTTAC TTCAGGACCC AAATCTTCTT AGACAATTGC TTCCTGCTTT 840
GCAAGCCACG CTGCAGCTTA ATAATTCTAA TGTGGACATA TCTAAAATAA ATGAAGTTCT 900
TACAGCAGCT GTGACACAAG CCTCACTGCA GTCTATAATT CATAAGTTTC TTACTGCTGG 960
ACCATCTGCT TTCAACATAA CGTCTCTGAT TTCTCAAGCT GCTCAGCTCT CTACACAAGC 1020
CCAGCCATCT AATCAGTCTC CGATGTCTTT AACATCTGAT GCGTCATCCC CAAGATCATA 1080
TGTTTCTCCA AGAATAAGCA CACCTCAAAC TAACACAGTC CCTATCAAAC CTTTGATCAG 1140
TACTCCTCCT GTTTCATCAC AGCCAAAGGT TAGTACTCCA GTAGTTAAGC AAGGACCAGT 1200
GTCACAGTCA GCCACACAGC AGCCTGTAAC TGCTGACAAG CAGCAAGGTC ATGAACCTGT 1260
CTCTCCTCGA AGTCTTCAGC GCTCAAGCCA GAGAAGTCCA TCACCTGGTC CCAATCATAC 1320 TTCTAATAGT AGTAATGCAT CAAATGCAAC AGTTGTACCA CAGAATTCTT CTGCCCGATC 1380
CACGTGTTCA TTAACGCCTG CACTAGCAGC ACACTTCAGT GAAAATCTCA TAAAACACGT 1440
TCAAGGATGG CCTGCAGATC ATGCAGAGAA GCAGGCATCA AGATTACGCG AAGAAGCGCA 1500
TAACATGGGA ACTATTCACA TGTCCGAAAT TTGTACTGAA TTAAAAAATT TAAGATCTTT 1560
AGTCCGAGTA TGTGAAATTC AAGCAACTTT GCGAGAGCAA AGGATACTAT TTTTGAGACA 1620
ACAAATTAAG GAACTTGAAA AGCTAAAAAA TCAGAATTCC TTCATGGTGT GAAGATGTGA 1680
ATAATTGCAC ATGGTTTTGA GAACAGGAAC TGTAAATCTG TTGCCCAATC TTAACATTTT 1740
TGAGCTGCAT TTAAGTAGAC TTTGGACCGT TAAGCTGGGC AAAGGAAATG ACAAGGGGAC 1800
GGGGTCTGTG AGAGTCAATT CAGGGGAAAG ATACAAGATT GATTTGTAAA ACCCTTGAAA 1860
TG AGATTTC TTGTAGATGT ATCCTTCACG TTGTAAATAT GTTTTGTAGA GTGAAGCCAT 1920
GGGAAGCCAT GTGTAACAGA GCTTAGACAT CCAAAACTAA TCAATGCTGA GGTGGCTAAA 1980
TACCTAGCCT TTTACATGTA AACCTGTCTG CAAAATTAGC TTTTTTAAAA AAAAAAAAAA 2040
A 2041 (2) INFORMATION FOR SEQ ID NO : 8 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 187 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 8:
Met Arg Gly Asn Ser Arg Asp Ser Val Met Ala Val Thr Thr Gly Gly 1 5 10 15
Gly Thr Arg Ser Leu Thr Arg His Leu Ser lie His Arg Arg Val Thr 20 25 30
Pro Val Ala Val lie Thr Asp Met Lys Arg Cys Glu Thr Pro Glu He 35 40 45
Leu His His Gin He Lys Cys Cys Gly Asp Leu He Val Leu Lys Thr 50 55 60
Asn Thr Val Thr Ala Gin Val Thr Val Arg Pro Lys Met Cys He Leu 65 70 75 80 Thr Glu Leu Glu Arg Gly Met Val Gly Pro Val Thr Leu His Lys Lys 85 90 95
He His Thr Thr Thr Val Leu Phe He Val Gin He His He Leu Leu 100 105 110
He Gin Ala He Thr Gin Ala Lys Leu Gin Met His Leu Met He Leu 115 120 125
Gin Met Thr Gly Leu Ser He Leu Ala Leu Leu Gly Lys Ser Thr Thr 130 135 140
Thr He Val Glu Gin Lys Phe His Asn Gly Lys Asn Gin Lys Ser Gly 145 150 155 160
Leu Lys Glu Asn Arg Asp Lys Lys Lys Gin Thr Arg Trp Gin Ser Thr 165 170 175
Ala Ser Gin Lys He Gly He Thr Glu Glu Arg 180 185
(2) INFORMATION FOR SEQ ID NO : 9 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1163 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 9 :
GCCCTATCCA CTTAATAGAT GCCAATTCAA AGAGGTTAAA TGATTAGACT AAGGCACCTA 60
ACTTATGTGA GTGTCAGGCT TCAATGCCTG TGTTAGAGCT ACTCCTTCAC ACAAAATAGT 120
TCAGAACATA GAGAAGGACC AAGGTTAATA AATGATTTTC ATCCCAAACA CTAAACATGA 180
TTGATGGGTA GAGGCTGCCC GAAGTACTGT GTAAAGATGG AATCTGAGAT AGAAGAATGC 240
TGTGGTCAAT TAGTAATTCT TGCCCATGGA GGGATTAGTG ACACATGCCT TGTATATTTG 300
TCATCTGTGG CCTAAACTCT GCCCCTGAAG GTTTGTTTTC TAATTCAGAG GTTTAAATTA 360
ATCTAGCCCA CTTAATAAAA CCAGAGATCC TATGGGAAAT TTAGCCTAAG ACAGTGCTGG 420
AAATTGCCAT ATGTTGATAC AAAGAAGTGT TTGGCCACAT TACAGGTCTC AGACTCAACT 480
GCTATGTGTG ACTGCCGCTC TGTGCCTATG TCTTGCTTTT TTGCTGAGTT CCCTATTTCC 540
ATATCTCCAG GTGAATCCAT GAGAAGCGAG AGGGTGGCTG AGAGGCCTGG GCCTCTGGGA 600 TTCCACCTTG CTATCTCTGC TCTTCAACCA TTGTTTTAGA CTCTGAACAC CAGATCCTCA 660
TATCTGAAAG TGATTTGGAG ACCTGGGCAT CAAGTGCTCT TTTAAGAAGG GGCTATCCCA 720
GAGGACTGTT CAAAAGTCTC ATTCAATAGA GATGTTGGAG TCCCAGAACA AAGTTAGGGA 780
GCAAACCAGT AACCTATGCT GGTSGTAACA GAGGATCCTA CAATTACGTT TGTTTTTAAG 840
ACAGGATTTT GCTGTGTTGC CCAGACTGGT CTCAAACTCC TGGGTTCAAG AGATCCATCC 900
TCCCACCTCA GTCTCCTGAA AGCTGGGATG ACAGGCACAT GCCACCACAC CTAGCTCCTT 960
ACAACCATTT ATTTTAACTT ATTTCATTTA TAACTGGTAT CTTTCATTTG TATGTGGCAG 1020
CTAGAGATTT ATATAGGATG GAAGTAATTT ATTTTTAATT TAAATATTTC ATGTTGAACT 1080
GTTTGCCTTG TATGGAACAT TTTACTTGGC CAATTCAAAT AAAAATAAAG TCAGCTTTGT 1140
TTGTGACAAA AAAAAAAAAA AAA 1163 (2) INFORMATION FOR SEQ ID NO: 10:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 43 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 10:
Met Leu He Gin Arg Ser Val Trp Pro His Tyr Arg Ser Gin Thr Gin 1 5 10 15
Leu Leu Cys Val Thr Ala Ala Leu Cys Leu Cys Leu Ala Phe Leu Leu 20 25 30
Ser Ser Leu Phe Pro Tyr Leu Gin Val Asn Pro 35 40
(2) INFORMATION FOR SEQ ID NO: 11:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 3067 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 11: GCGGTGGCTG AGGCGGCTGG GCCTAGGGTG CAGCGGGCGC GTCTGCGGCT GGTGTTGGCG 60
CATCTCTAGA TCCTTTCCCG GAGTTCAGTT ATGGGTGTGA GAGGTTTGCA AGGATTTGTG 120
GGAAGTACCT GCCCACATAT ATGTACAGTA GTAAATTTCA AAGAACTGGC AGAGCACCAC 180
CGAAGCAAGT ATCCTGGATG TACCCCTACC ATTGTGGTTG ATGCCATGTG TTGTCTCAGA 240
TATTGGTATA CTCCAGAATC TTGGATCTGC GGTGGCCAGT GGCGAGAATA CTTTTCTGCT 300
TTGCGAGATT TTGTTAAAAC TTTTACGGCA GCTGGGATCA AGTTGATATT CTTCTTTGAT 360
GGCATGGTGG AGCAGGATAA GAGAGATGAA TGGGTGAAAC GAAGGCTCAA GAACAACAGG 420 GAGATATCCA GGATTTTTCA TTACATCAAG TCACACAAGG AGCAGCCAGG CAGAAATATG 480 TTCTTCATCC CCTCAGGGCT AGCTGTGTTT ACACGATTTG CTCTAAAGAC ACTGGGCCAG 540 GAAACTTTGT GTTCTTTGCA GGAAGCAGAT TATGAGGTAG CTTCCTATGG CCTCCAGCAT 600 AACTGTCTTG GGATTCTGGG GGAAGACACT GATTACCTAA TCTATGACAC TTGTCCCTAC 660 TTTTCAATTA GCGAGCTCTG CCTAGAGAGC CTGGACACCG TCATGCTCTG CAGAGAGAAG 720 CTCTGTGAGA GTCTGGGCCT CTGTGTGGCC GACCTTCCTC TTCTGGCCTG CCTCCTTGGC 780 GACGACATAA TCCCAGAGGG CATGTTTGAA AGCTTTAGGT ACAAATGCTT ATCGTCCTAC 840 ACCTCTGTAA AAGAGAACTT TGACAAAAAA GGTAACATCA TATTAGCTGT GTCAGACCAT 900 ATATCGAAAG TTCTTTACTT GTATCAAGGT GAGAAAAAAT TAGAAGAGAT ATTACCTCTG 960
GGACCAAACA AAGCTCTTTT TTATAAAGGA ATGGCATCAT ATCTTTTACC AGGACAAAAA 1020
TCTCCATGGT TTTTCCAAAA ACCCAAAGGT GTAATAACTT TGGACAAACA AGTAATATCC 1080
ACGAGTTCAG ACGCCGAATC CAGGGAAGAA GTTCCCATGT GTTCAGATGC TGAATCCAGG 1140
CAAGAAGTTC CCATGTGTAC AGGCCCTGAA TCCAGGCGAG AAGTTCCCGT GTATACAGAT 1200
TCTGAACCCA GGCAAGAAGT TCCCATGTGT TCAGACCCTG AACCCAGGCA AGAAGTTCCC 1260
ACATGTACAG GCCCTGAATC CAGGCGAGAA GTTCCCATGT GTTCAGACCC TGAACCCAGG 1320
CAAGAAGTTC CCATGTGTAC AGGCCCTGAA GCCAGGCAAG AAGTTCCCAT GTATACAGAC 1380
TCTGAACCCA GGCAAGAAGT TCCCATGTAT ACAGACTCTG AACCCAGGCA AGAAGTTCCC 1440
ATGTATACAG GCTCTGAACC CAGGCAAGAA GTTCCCATGT ATACAGGCCC TGAATCCAGG 1500
CAAGAAGTTC CCATGTATAC AGGCCCTGAA TCCAGGCAAG AAGTTTTAAT ACGGACAGAC 1560 CCTGAATCTA GGCAAGAAAT TATGTGTACA GGCCATGAAT CCAAACAGGA AGTTCCCATA 1620
TGTACAGATC CTATATCCAA GCAAGAAGAC TCCATGTGTA CACACGCTGA AATCAATCAA 1680
AAATTACCTG TAGCAACAGA TTTTGAATTT AAGCTAGAAG CTCTCATGTG TACAAACCCT 1740
GAAATTAAAC AAGAAGACCC CACAAATGTG GGGCCTGAAG TAAAGCAACA AGTAACCATG 1800
GTTTCAGACA CTGAAATCTT AAAGGTTGCT AGAACACATC ACGTCCAAGC AGAAAGCTAC 1860
CTGGTGTACA ACATCATGAG CAGTGGAGAG ATTGAATGCA GCAACACCCT AGAAGATGAG 1920
CTTGACCAGG CCTTACCCAG CCAGGCCTTC ATTTACCGTC CCATTCGACA GCGGGTCTAC 1980
TCACTCTTAC TGGAGGACTG TCAAGATGTC ACCAGCACCT GCCTAGCTGT CAAGGAGTGG 2040
TTTGTGTATC CTGGGAACCC ACTGAGGCAC CCGGACCTCG TCAGGCCGCT GCAGATGACC 2100
ATTCCAGGGG GAACGCCTAG TTTGAAAATA TTATGGCTGA ACCAAGAGCC AGAAATACAG 2160
GTTCGGCGCT TGGACACACT CCTAGCCTGT TTCAATCTTT CCTCCTCAAG AGAAGAGCTG 2220
CAGGCTGTCG AAAGCCCATT TCAAGCTTTG TGCTGCCTCT TGATCTACCT CTTTGTCCAG 2280
GTGGACACGC TTTGCCTGGA GGATTTGCAT GCGTTTATTG CGCAGGCCTT GTGCCTCCAA 2340
GGAAAATCCA CCTCGCAGCT TGTAAATCTA CAGCCTGATT ACATCAACCC CAGAGCCGTG 2400
CAGCTGGGCT CCCTTCTCGT CCGCGGCCTC ACCACTCTGG TTTTAGTCAA CAGCGCATGT 2460
GGCTTCCCCT GGAAGACGAG TGATTTCATG CCCTGGAATG TATTTGACGG GAAGCTTTTT 2520
CATCAGAAGT ACTTGCAATC TGAAAAGGGT TATGCTGTGG AGGTTCTTTT AGAACAAAAT 2580
GGAGGTGGGG AAGACAGGGC TCCAGCTACC ACAGGACGGG CTCTGGGTAT AGCCGTTCCA 2640
GTCAGGGACA GCCGTGGAGA GACCAGGGAC CAGGAAGCAG ACAGTATGAG CATGACCAGT 2700
GGAGAAGGTA CTAGTCAACC TCCAGAAAGA GTATGGAGAG AAAAAGAGGC ACACCTGGAC 2760
GCAGAGCCCT GCCAGCGCCC TCCTCTGCTG TTGCAGCTGC AAGGAGACCA TGCCTGTGGG 2820
AGCCAGGCCT CGCTTGCATG AAGAAGGAAC GATGCCTTTT TCAATGGTGT CTCCCTCCCA 2880
TTGTGCAGAA GAGCTTTTGT TGGCTTCTCT CCCGAGCTTG TGCCTGATTC TGTGGCCCAA 2940
AACAATCATT GTTAACATCT TCATGTGTTT CATTCTGATC TTTCATTCAT ATATATGATG 3000
CCTAGCTAAT TTCATTTTAA AATAAATGGG AATCTGTTGT AAAAAAAAAA AAAAAAAAAA 3060
AAAAAAA 3067 (2) INFORMATION FOR SEQ ID NO: 12: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 916 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 12:
Met Gly Val Arg Gly Leu Gin Gly Phe Val Gly Ser Thr Cys Pro His 1 5 10 15
He Cys Thr Val Val Asn Phe Lys Glu Leu Ala Glu His His Arg Ser 20 25 30
Lys Tyr Pro Gly Cys Thr Pro Thr He Val Val Asp Ala Met Cys Cys 35 40 45
Leu Arg Tyr Trp Tyr Thr Pro Glu Ser Trp He Cys Gly Gly Gin Trp 50 55 60
Arg Glu Tyr Phe Ser Ala Leu Arg Asp Phe Val Lys Thr Phe Thr Ala 65 70 75 80
Ala Gly He Lys Leu He Phe Phe Phe Asp Gly Met Val Glu Gin Asp 85 90 95
Lys Arg Asp Glu Trp Val Lys Arg Arg Leu Lys Asn Asn Arg Glu He 100 105 110
Ser Arg He Phe His Tyr He Lys Ser His Lys Glu Gin Pro Gly Arg 115 120 125
Asn Met Phe Phe He Pro Ser Gly Leu Ala Val Phe Thr Arg Phe Ala 130 135 140
Leu Lys Thr Leu Gly Gin Glu Thr Leu Cys Ser Leu Gin Glu Ala Asp 145 150 155 160
Tyr Glu Val Ala Ser Tyr Gly Leu Gin His Asn Cys Leu Gly He Leu 165 170 175
Gly Glu Asp Thr Asp Tyr Leu He Tyr Asp Thr Cys Pro Tyr Phe Ser 180 185 190
He Ser Glu Leu Cys Leu Glu Ser Leu Asp Thr Val Met Leu Cys Arg 195 200 205
Glu Lys Leu Cys Glu Ser Leu Gly Leu Cys Val Ala Asp Leu Pro Leu 210 215 220
Leu Ala Cys Leu Leu Gly Asp Asp He He Pro Glu Gly Met Phe Glu 225 230 235 240
Ser Phe Arg Tyr Lys Cys Leu Ser Ser Tyr Thr Ser Val Lys Glu Asn 245 250 ' 255
Phe Asp Lys Lys Gly Asn He He Leu Ala Val Ser Asp His He Ser 260 265 270
Lys Val Leu Tyr Leu Tyr Gin Gly Glu Lys Lys Leu Glu Glu He Leu 275 280 285
Pro Leu Gly Pro Asn Lys Ala Leu Phe Tyr Lys Gly Met Ala Ser Tyr 290 295 300
Leu Leu Pro Gly Gin Lys Ser Pro Trp Phe Phe Gin Lys Pro Lys Gly 305 310 315 320
Val He Thr Leu Asp Lys Gin Val He Ser Thr Ser Ser Asp Ala Glu 325 330 335
Ser Arg Glu Glu Val Pro Met Cys Ser Asp Ala Glu Ser Arg Gin Glu 340 345 350
Val Pro Met Cys Thr Gly Pro Glu Ser Arg Arg Glu Val Pro Val Tyr 355 360 365
Thr Asp Ser Glu Pro Arg Gin Glu Val Pro Met Cys Ser Asp Pro Glu 370 375 380
Pro Arg Gin Glu Val Pro Thr Cys Thr Gly Pro Glu Ser Arg Arg Glu 385 390 395 400
Val Pro Met Cys Ser Asp Pro Glu Pro Arg Gin Glu Val Pro Met Cys 405 410 415
Thr Gly Pro Glu Ala Arg Gin Glu Val Pro Met Tyr Thr Asp Ser Glu 420 425 430
Pro Arg Gin Glu Val Pro Met Tyr Thr Asp Ser Glu Pro Arg Gin Glu 435 440 445
Val Pro Met Tyr Thr Gly Ser Glu Pro Arg Gin Glu Val Pro Met Tyr 450 455 460
Thr Gly Pro Glu Ser Arg Gin Glu Val Pro Met Tyr Thr Gly Pro Glu 465 470 475 480
Ser Arg Gin Glu Val Leu He Arg Thr Asp Pro Glu Ser Arg Gin Glu 485 490 495
He Met Cys Thr Gly His Glu Ser Lys Gin Glu Val Pro He Cys Thr 500 505 510
Asp Pro He Ser Lys Gin Glu Asp Ser Met Cys Thr His Ala Glu He 515 520 525 Asn Gin Lys Leu Pro Val Ala Thr Asp Phe Glu Phe Lys Leu Glu Ala 530 535 540
Leu Met Cys Thr Asn Pro Glu He Lys Gin Glu Asp Pro Thr Asn Val 545 550 555 560
Gly Pro Glu Val Lys Gin Gin Val Thr Met Val Ser Asp Thr Glu He 565 570 575
Leu Lys Val Ala Arg Thr His His Val Gin Ala Glu Ser Tyr Leu Val 580 585 590
Tyr Asn He Met Ser Ser Gly Glu He Glu Cys Ser Asn Thr Leu Glu 595 600 605
Asp Glu Leu Asp Gin Ala Leu Pro Ser Gin Ala Phe He Tyr Arg Pro 610 615 620
He Arg Gin Arg Val Tyr Ser Leu Leu Leu Glu Asp Cys Gin Asp Val 625 630 635 640
Thr Ser Thr Cys Leu Ala Val Lys Glu Trp Phe Val Tyr Pro Gly Asn 645 650 655
Pro Leu Arg His Pro Asp Leu Val Arg Pro Leu Gin Met Thr He Pro 660 665 670
Gly Gly Thr Pro Ser Leu. Lys He Leu Trp Leu Asn Gin Glu Pro Glu 675 680 685
He Gin Val Arg Arg Leu Asp Thr Leu Leu Ala Cys Phe Asn Leu Ser 690 695 700
Ser Ser Arg Glu Glu Leu Gin Ala Val Glu Ser Pro Phe Gin Ala Leu 705 710 715 720
Cys Cys Leu Leu He Tyr Leu Phe Val Gin Val Asp Thr Leu Cys Leu 725 730 735
Glu Asp Leu His Ala Phe He Ala Gin Ala Leu Cys Leu Gin Gly Lys 740 745 750
Ser Thr Ser Gin Leu Val Asn Leu Gin Pro Asp Tyr He Asn Pro Arg 755 760 765
Ala Val Gin Leu Gly Ser Leu Leu Val Arg Gly Leu Thr Thr Leu Val 770 775 780
Leu Val Asn Ser Ala Cys Gly Phe Pro Trp Lys Thr Ser Asp Phe Met 785 790 795 800
Pro Trp Asn Val Phe Asp Gly Lys Leu Phe His Gin Lys Tyr Leu Gin 805 810 815
Ser Glu Lys Gly Tyr Ala Val Glu Val Leu Leu Glu Gin Asn Gly Gly 820 825 830
Gly Glu Asp Arg Ala Pro Ala Thr Thr Gly Arg Ala Leu Gly He Ala 835 840 845
Val Pro Val Arg Asp Ser Arg Gly Glu Thr Arg Asp Gin Glu Ala Asp 850 855 860
Ser Met Ser Met Thr Ser Gly Glu Gly Thr Ser Gin Pro Pro Glu Arg 865 870 875 880
Val Trp Arg Glu Lys Glu Ala His Leu Asp Ala Glu Pro Cys Gin Arg 885 890 895
Pro Pro Leu Leu Leu Gin Leu Gin Gly Asp His Ala Cys Gly Ser Gin 900 905 910
Ala Ser Leu Ala 915
(2) INFORMATION FOR SEQ ID NO: 13:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1914 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 13:
AGCTGTCTGC TCTCCTGGCA GGAATCGCTG AGGGAGGGAA ACGCGGCTCT GAATCAGCCC 60
AGAACGAGCC TTCGGGAAGC TCACCCTCCG ATCTCGGTGT GATTGTTGTG ATTGTTGTGA 120
TTTCCTGTCT CGTTTGCCTT GACCGCCATG TGAAAGAATC TGTTCCCCAG CTAGGTGGGG 180
AAAATTCACA GGTGGGCTGT CTGTAGAGAG AACTGGCTGA TTAAAGGCTT CTCGTCCCGA 240
TTTTGTGATA GCCAAGTGCT TGGCCTGGTC GACGGTCTTT GCTCCTTTAC AAATAAAGTG 300
TTCTGTTTCA GTTCGTCCCA AGTTTTCCAT GAAGGGCAGT GGTTCCCTGA CCTCCCAGGT 360
GCCTGGGCTT CCCCAGGTTC CTGATCTGGG GCTTGGGGCC CTGTGTTTGG GGATCGTGGC 420
ACTGTGTGCA CCAGCCTGGA AGCACTGGGC CAGTCTTGGC CAAGCTTTCC ATCAGGGATG 480
ATTTGATCTT GGTGCTACAG GTCTGTGGTA CGACCATTGT TCCACACCAC ATGTCATTAA 540
TAATGCTTCC CATGCTTCTG CTTGCAAATG ACCAGCCTTC CAAACAGCCA GAGCTGTTTC 600 GAGGTGTTTC TGCAGGCAGG TGCAGGCGTG CCCTCAAATA AGCTTTGCCA ATGGAGTCTC 660
AGCAAGAGCA AAACCTGGTC AGGAAAGACA AAGCCTGGGA ATCCACCCCC ATGCCCTGCA 720
GGTTGGCTGG CCCTGGAGCC ATTTATTATA GTGCTAATCA TGTTTCTAGG CAGGTGCAGA 780
TGGCAAGGGC AGTGTCTTGG TGAGCTTTTT AGCACGAAGA GCCAGGTCTG TCGAAGCCTT 840
TGTGAGAGCT GGAAACGCAG GTGTGCTGGG CATGCGCAGT ATGGGGTTTC GGGCTCAGGG 900
CTTGCCCTTT GGCATCAGAC AGACCTGGCT TCGCATCCTG GATTTGCTTC TGACGTGCAC 960
CCTTCCCTTT GGGTCTCGTG ATGTGAAATG GAGATGTTGT CATTTGTGAG GGCTCCATGA 1020
AGTTTCGTTG AAATGACAAA TACTAATTTC TTCATCTGTG AAATGGAGAT AATAGTGCTG 1080
ACCTCAGAAC AGCTGAGAGG ACTAAATGAA ATGATGTTGG ATGTAGCCAT AAAGAACGAA 1140
GTCAGGCACT GGTGCACGCC TGGAATCCCA GCTCTTGGGA GACCGAGACA GGTGGATTGC 1200
TTGAGCTCAG GAGTTTGAGA CCAGCCTGAG CAACATAGGG AGGTCCAGTC TCTACAAAAA 1260
ATATGAAAAG TAGCTGGGCG TGGTGGCGCA TGCCTGTAGT CCCACTACTT GGAAGGCTTC 1320
GTTGGGAGGA TCACTTGAGC CCAGAAGATT GAGGCTGCAG TAAGCCGTGA TCGTGCCACT 1380
GCATTCCAGC CTGGGCAACA GAGCGAGACA CTGTCTCAAA TAAAAAAGAT GGGAATAGTA 1440
GACACTGGGG GCTCCAGAAG GAGGGAGGGA GGGAGGAAGG GGAGGAAGGG CTGAAATGCT 1500
TTCTATTGGA TACTATCTGG GCATATTACT TCCTGTGGTT CACTGTCTGG GTGACAGGAT 1560
TCATAGAAGC CCAAACTTTA GCACCACGCA GCATACCCTT GTAACAAAGC CGCACACGTA 1620
CGCCCTCAAG CTAAAACAAA AGTGGACCGG GAGGCCGAGG TCGGGGGATC ATGAGGTCAG 1680
GAGTTTGAGA CCAGCCTGGC AGATAACGGT GAAACCCCGT CTCTACTAAA AATACCAAAA 1740
AAAGTTAGCC GGACATGGTG GCAGGTGCCT GTAGTCCCAG CTACTTGGGA GGCTGGGGCA 1800
GAAGAATCGC TTGAACCCAG GAGGCGGAGG TTGCAGTGAG CCGAGATTGC GCCACTGCAC 1860
TCCAGCCTGT GCGACAGAGT GAGACTCCGT CTCAAAAAAA AAAAAAAAAA AAAA 1914 (2) INFORMATION FOR SEQ ID NO: 14:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 137 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 14:
Met Thr Ser Leu Pro Asn Ser Gin Ser Cys Phe Glu Val Phe Leu Gin 1 5 10 15
Ala Gly Ala Gly Val Pro Ser Asn Lys Leu Cys Gin Trp Ser Leu Ser 20 25 30
Lys Ser Lys Thr Trp Ser Gly Lys Thr Lys Pro Gly Asn Pro Pro Pro 35 40 45
Cys Pro Ala Gly Trp Leu Ala Leu Glu Pro Phe He He Val Leu He 50 55 60
Met Phe Leu Gly Arg Cys Arg Trp Gin Gly Gin Cys Leu Gly Glu Leu 65 70 75 80
Phe Ser Thr Lys Ser Gin Val Cys Arg Ser Leu Cys Glu Ser Trp Lys 85 90 95
Arg Arg Cys Ala Gly His Ala Gin Tyr Gly Val Ser Gly Ser Gly Leu 100 105 110
Ala Leu Trp His Gin Thr Asp Leu Ala Ser His Pro Gly Phe Ala Ser 115 120 125
Asp Val His Pro Ser Leu Trp Val Ser 130 135
(2) INFORMATION FOR SEQ ID NO: 15:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 575 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: double
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 15:
CCGACTCCCT TCTTTATGGC GTCGCTCCTG TGCTGTGGGC CGAAGCTGGC CGCCTGCGGC 60
ATCGTCCTCA GCGCCTGGGG AGTGATCATG TTGATAATGC TCGGAATATT TTTCAATGTC 120
CATTCCGCTG TGTTGATTGA GGACGTTCCC TTCACGGAGA AAGATTTTGA GAATGGCCCC 180
CAGAACATAT ACAACCTTTA CGAGCAAGTC AGCTACAACT GTTTCATCGC TGCAGGCCTT 240
TACCTCCTCC TCGGAGGCTT CTCTTTCTGC CAAGTTCGGC TCAATAAGCG CAAGGAATAC 300 ATGGTGCGCT AGGGCCCCGG CGCGTTTCCC CGCTCCAGCC CCTCCTCTAT TTAAAGACTC 360
CCTGCACCGT GTCACCCAGG TCGCGTCCCA CCCTTGCCGG CGCCCTCTGT GGGACTGGGT 420
TTCCCGGGCG AGAGACTGAA TCCCTTCTCC CATCTCTGGC ATCCGGCCCC CGTGGAGAGG 480
GCTGAGGCTG GGGGGCTGTT CCGTCTCTCC ACCCTTCGCT GTGTCCCGTA TCTCAATAAA 540
GAGAATCTGC TCTCTTCAAA AAAAAAAAAA AAAAA 575 (2) INFORMATION FOR SEQ ID NO: 16:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 98 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 16:
Met Ala Ser Leu Leu Cys Cys Gly Pro Lys Leu Ala Ala Cys Gly He 1 5 10 15
Val Leu Ser Ala Trp Gly Val He Met Leu He Met Leu Gly He Phe 20 25 30
Phe Asn Val His Ser Ala Val Leu He Glu Asp Val Pro Phe Thr Glu 35 40 45
Lys Asp Phe Glu Asn Gly Pro Gin Asn He Tyr Asn Leu Tyr Glu Gin 50 55 60
Val Ser Tyr Asn Cys Phe He Ala Ala Gly Leu Tyr Leu Leu Leu Gly 65 70 75 80
Gly Phe Ser Phe Cys Gin Val Arg Leu Asn Lys Arg Lys Glu Tyr Met 85 90 95
Val Arg
(2) INFORMATION FOR SEQ ID NO: 17:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 17: GNAGCCCAGGA GTCTTCTCAA CCTCTTCC 29
(2) INFORMATION FOR SEQ ID NO: 18:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 18: ANCAGTCGCAA GTGCATAGTA ACCCAGTA 29
(2) INFORMATION FOR SEQ ID NO: 19:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 19: TNCTCAGCTTT TATTTGGTTC TGAGTGTT 29
(2) INFORMATION FOR SEQ ID NO: 20:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 20: TNTGCTCAGAC CAGTCATCTG CAGAATCA ' 29
(2) INFORMATION FOR SEQ ID NO: 21:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 21: TNCAGCACTGT CTTAGGCTAA ATTTCCCA 29
(2) INFORMATION FOR SEQ ID NO: 22:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 22: GNATTCGGCGT CTGAACTCGT GGATATTA 29
(2) INFORMATION FOR SEQ ID NO: 23:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide" (xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: ANATGCCCAGA TAGTATCCAA TAGAAAGC 29
(2) INFORMATION FOR SEQ ID NO: 24:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 29 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid
(A) DESCRIPTION: /desc = "oligonucleotide"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 24: CNACAGCACAG GAGCGACGCC ATAAAGAA 29
(2) INFORMATION FOR SEQ ID NO: 25:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 543 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS:
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 25:
Met Val Met Tyr Ala Arg Lys Gin Gin Arg Leu Ser Asp Gly Cys His 1 5 10 15
Asp Arg Arg Gly Asp Ser Gin Pro Tyr Gin Ala Leu Lys Tyr Ser Ser 20 25 30
Lys Ser His Pro Ser Ser Gly Asp His Arg His Glu Lys Met Arg Asp 35 40 45
Ala Gly Asp Pro Ser Pro Pro Asn Lys Met Leu Arg Arg Ser Asp Ser 50 55 60
Pro Glu Asn Lys Tyr Ser Asp Ser Thr Gly His Ser Lys Ala Lys Asn 65 70 75 80
Val His Thr His Arg Val Arg Glu Arg Asp Gly Gly Thr Ser Tyr Ser 85 90 95 Pro Gin Glu Asn Ser His Asn His Ser Ala Leu His Ser Ser Asn Ser 100 105 110
His Ser Ser Asn Pro Ser Asn Asn Pro Ser Lys Thr Ser Asp Ala Pro 115 120 125
Tyr Asp Ser Ala Asp Asp Trp Ser Glu His He Ser Ser Ser Gly Lys 130 135 140
Lys Tyr Tyr Tyr Asn Cys Arg Thr Glu Val Ser Gin Trp Glu Lys Pro 145 150 155 160
Lys Glu Trp Leu Glu Arg Glu Gin Arg Gin Lys Glu Ala Asn Lys Met 165 170 175
Ala Val Asn Ser Phe Pro Lys Asp Arg Asp Tyr Arg Arg Glu Val Met 180 185 190
Gin Ala Thr Ala Thr Ser Gly Phe Ala Ser Gly Lys Ser Thr Ser Gly 195 200 205
Asp Lys Pro Val Ser His Ser Cys Thr Thr Pro Ser Thr Ser Ser Ala 210 215 220
Ser Gly Leu Asn Pro Thr Ser Ala Pro Pro Thr Ser Ala Ser Ala Val 225 230 235 240
Pro Val Ser Pro Val Pro Gin Ser Pro He Pro Pro Leu Leu Gin Asp 245 250 255
Pro Asn Leu Leu Arg Gin Leu Leu Pro Ala Leu Gin Ala Thr Leu Gin 260 265 270
Leu Asn Asn Ser Asn Val Asp He Ser Lys He Asn Glu Val Leu Thr 275 280 285
Ala Ala Val Thr Gin Ala Ser Leu Gin Ser He He His Lys Phe Leu 290 295 300
Thr Ala Gly Pro Ser Ala Phe Asn He Thr Ser Leu He Ser Gin Ala 305 310 315 320
Ala Gin Leu Ser Thr Gin Ala Gin Pro Ser Asn Gin Ser Pro Met Ser 325 330 335
Leu Thr Ser Asp Ala Ser Ser Pro Arg Ser Tyr Val Ser Pro Arg He 340 345 350
Ser Thr Pro Gin Thr Asn Thr Val Pro He Lys Pro Leu He Ser Thr 355 360 365
Pro Pro Val Ser Ser Gin Pro Lys Val Ser Thr Pro Val Val Lys Gin 370 375 380
Gly Pro Val Ser Gin Ser Ala Thr Gin Gin Pro Val Thr Ala Asp Lys 385 390 395 400
Gin Gin Gly His Glu Pro Val Ser Pro Arg Ser Leu Gin Arg Ser Ser 405 410 ' 415
Gin Arg Ser Pro Ser Pro Gly Pro Asn His Thr Ser Asn Ser Ser Asn 420 425 430
Ala Ser Asn Ala Thr Val Val Pro Gin Asn Ser Ser Ala Arg Ser Thr 435 440 445
Cys Ser Leu Thr Pro Ala Leu Ala Ala His Phe Ser Glu Asn Leu He 450 455 460
Lys His Val Gin Gly Trp Pro Ala Asp His Ala Glu Lys Gin Ala Ser 465 470 475 480
Arg Leu Arg Glu Glu Ala His Asn Met Gly Thr He His Met Ser Glu 485 490 495
He Cys Thr Glu Leu Lys Asn Leu Arg Ser Leu Val Arg Val Cys Glu 500 505 510
He Gin Ala Thr Leu Arg Glu Gin Arg He Leu Phe Leu Arg Gin Gin 515 520 525
He Lys Glu Leu Glu Lys Leu Lys Asn Gin Asn Ser Phe Met Val 530 535 540

Claims

What is claimed is:
1. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 99 to nucleotide 902;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 162 to nucleotide 902;
(d) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:l from nucleotide 87 to nucleotide 219;
(e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415;
(f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415;
(g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone ci25_4 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415;
(i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:2;
(j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:2 having biological activity, the fragment comprising the amino acid sequence from amino acid 129 to amino acid 138 of SEQ ID NO:2;
(k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
2. The polynucleotide of claim 1 wherein said polynucleotide is operably linked to at least one expression control sequence.
3. A host cell transformed with the polynucleotide of claim 2.
4. The host cell of claim 3, wherein said cell is a mammalian cell.
5. A process for producing a protein encoded by the polynucleotide of claim 2, which process comprises:
(a) growing a culture of the host cell of claim 3 in a suitable culture medium; and
(b) purifying said protein from the culture.
6. A protein produced according to the process of claim 5.
7. The protein of claim 6 comprising a mature protein.
8. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:2;
(b) fragments of the amino acid sequence of SEQ ID NO:2 comprising the amino acid sequence from amino acid 129 to amino acid 138 of SEQ ID NO:2; and
(c) the amino acid sequence encoded by the cDNA insert of clone ci25_4 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
9. The protein of claim 8, wherein said protein comprises the amino acid sequence of SEQ ID NO:2.
10. A composition comprising the protein of claim 8 and a pharmaceutically acceptable carrier.
11. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:l.
12. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:3;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:3 from nucleotide 283 to nucleotide 1158;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:3 from nucleotide 1 to nucleotide 789;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone da228_6 deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone da228_6 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:4;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:4 having biological activity, the fragment comprising the amino acid sequence from amino acid 141 to amino acid 150 of SEQ ID NO:4;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
13. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:4; (b) the amino acid sequence of SEQ ID NO:4 from amino acid 1 to amino acid 169;
(c) fragments of the amino acid sequence of SEQ ID NO:4 comprising the amino acid sequence from amino acid 141 to amino acid 150 of SEQ ID NO:4; and
(d) the amino acid sequence encoded by the cDNA insert of clone da228_6 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
14. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:3.
15. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5 from nucleotide 152 to nucleotide 2182;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:5 from nucleotide 2 to nucleotide 931;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone du410_5 deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone du410_5 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:6;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:6 having biological activity, the fragment comprising the amino acid sequence from amino acid 333 to amino acid 342 of SEQ ID NO:6; (j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
16. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:6;
(b) the amino acid sequence of SEQ ID NO:6 from amino acid 1 to amino acid 260;
(c) fragments of the amino acid sequence of SEQ ID NO:6 comprising the amino acid sequence from amino acid 333 to amino acid 342 of SEQ ID NO:6; and
(d) the amino acid sequence encoded by the cDNA insert of clone du410_5 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
17. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:5.
18. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:7;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:7 from nucleotide 51 to nucleotide 611;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 7 from nucleotide 1 to nucleotide 525;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone eh80_l deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415; (f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone eh80_l deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:8;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:8 having biological activity, the fragment comprising the amino acid sequence from amino acid 88 to amino acid 97 of SEQ ID NO:8;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
19. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:8;
(b) the amino acid sequence of SEQ ID NO:8 from amino acid 1 to amino acid 158;
(c) fragments of the amino acid sequence of SEQ ID NO:8 comprising the amino acid sequence from amino acid 88 to amino acid 97 of SEQ ID NO:8; and
(d) the amino acid sequence encoded by the cDNA insert of clone eh80_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
20. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:7.
21. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9; (b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9 from nucleotide 431 to nucleotide 559;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9 from nucleotide 518 to nucleotide 559;
(d) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:9 from nucleotide 190 to nucleotide 547;
(e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone er369_l deposited under accession number ATCC 98415;
(f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415;
(g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone er369_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415;
(i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO: 10;
(j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:10 having biological activity, the fragment comprising the amino acid sequence from amino acid 16 to amino acid 25 of SEQ ID NO:10;
(k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
22. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 10;
(b) the amino acid sequence of SEQ ID NO:10 from amino acid 1 to amino acid 39; (c) fragments of the amino acid sequence of SEQ ID NO:10 comprising the amino acid sequence from amino acid 16 to amino acid 25 of SEQ ID NO: 10; and
(d) the amino acid sequence encoded by the cDNA insert of clone er369_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
23. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:9.
24. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:ll;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 11 from nucleotide 91 to nucleotide 2838;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:ll from nucleotide 2209 to nucleotide 2838;
(d) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 11 from nucleotide 839 to nucleotide 1197;
(e) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415;
(f) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415;
(g) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fhl23_5 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415;
(i) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:12;
(j) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO: 12 having biological activity, the fragment comprising the amino acid sequence from amino acid 453 to amino acid 462 of SEQ ID NO:12; (k) a polynucleotide which is an allelic variant of a polynucleotide of (a)-(h) above;
(1) a polynucleotide which encodes a species homologue of the protein of (i) or (j) above ; and
(m) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(j).
25. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO:12;
(b) the amino acid sequence of SEQ ID NO:12 from amino acid 251 to amino acid 369;
(c) fragments of the amino acid sequence of SEQ ID NO:12 comprising the amino acid sequence from amino acid 453 to amino acid 462 of SEQ ID NO:12; and
(d) the amino acid sequence encoded by the cDNA insert of clone fhl23_5 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
26. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:ll.
27. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:13;
(b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:13 from nucleotide 568 to nucleotide 978;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:13 from nucleotide 1084 to nucleotide 1854;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fm60_l deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415; (f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fm60_l deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:14;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO: 14 having biological activity, the fragment comprising the amino acid sequence from amino acid 63 to amino acid 72 of SEQ ID NO:14;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
28. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 14;
(b) fragments of the amino acid sequence of SEQ ID NO: 14 comprising the amino acid sequence from amino acid 63 to amino acid 72 of SEQ ID NO: 14; and
(c) the amino acid sequence encoded by the cDNA insert of clone fm60_l deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
29. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:13.
30. An isolated polynucleotide selected from the group consisting of:
(a) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:15; (b) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:15 from nucleotide 16 to nucleotide 309;
(c) a polynucleotide comprising the nucleotide sequence of SEQ ID NO:15 from nucleotide 127 to nucleotide 309;
(d) a polynucleotide comprising the nucleotide sequence of the full- length protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415;
(e) a polynucleotide encoding the full-length protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415;
(f) a polynucleotide comprising the nucleotide sequence of a mature protein coding sequence of clone fr473_2 deposited under accession number ATCC 98415;
(g) a polynucleotide encoding a mature protein encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415;
(h) a polynucleotide encoding a protein comprising the amino acid sequence of SEQ ID NO:16;
(i) a polynucleotide encoding a protein comprising a fragment of the amino acid sequence of SEQ ID NO:16 having biological activity, the fragment comprising the amino acid sequence from amino acid 44 to amino acid 53 of SEQ ID NO:16;
(j) a polynucleotide which is an allelic variant of a polynucleotide of
(a)-(g) above;
(k) a polynucleotide which encodes a species homologue of the protein of (h) or (i) above ; and
(1) a polynucleotide that hybridizes under stringent conditions to any one of the polynucleotides specified in (a)-(i).
31. A protein comprising an amino acid sequence selected from the group consisting of:
(a) the amino acid sequence of SEQ ID NO: 16;
(b) the amino acid sequence of SEQ ID NO: 16 from amino acid 1 to amino acid 58; (c) fragments of the amino acid sequence of SEQ ID NO: 16 comprising the amino acid sequence from amino acid 44 to amino acid 53 of SEQ ID NO: 16; and
(d) the amino acid sequence encoded by the cDNA insert of clone fr473_2 deposited under accession number ATCC 98415; the protein being substantially free from other mammalian proteins.
32. An isolated gene corresponding to the cDNA sequence of SEQ ID NO:15.
PCT/US1998/008336 1997-04-25 1998-04-24 Secreted proteins and polynucleotides encoding them WO1998049302A1 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
EP98918724A EP0977853A1 (en) 1997-04-25 1998-04-24 Secreted proteins and polynucleotides encoding them
CA002288343A CA2288343A1 (en) 1997-04-25 1998-04-24 Secreted proteins and polynucleotides encoding them
JP54719298A JP2001527403A (en) 1997-04-25 1998-04-24 Secreted proteins and polynucleotides encoding them
AU71598/98A AU7159898A (en) 1997-04-25 1998-04-24 Secreted proteins and polynucleotides encoding them

Applications Claiming Priority (4)

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US84529697A 1997-04-25 1997-04-25
US6512598A 1998-04-23 1998-04-23
US08/845,296 1998-04-23
US09/065,125 1998-04-23

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WO2001077169A2 (en) * 2000-04-05 2001-10-18 Kirin Beer Kabushiki Kaisha Methods and materials relating to stem cell growth factor-like polypeptides and polynucleotides
US6780987B1 (en) * 1999-12-10 2004-08-24 Trustees Of The Tufts College β-cap73 control of normal and abnormal cell migration
US6797271B2 (en) * 1999-03-25 2004-09-28 Genesis Research & Development Corporation Limited Methods for enhancing immune responses by fibroblast growth factor receptor 5 polypeptides
US6824973B2 (en) 2000-02-03 2004-11-30 Kirin Beer Kabushiki Kaisha Method of promoting stem cell proliferation or survival by contacting a cell with a stem cell factor-like polypeptide
US7083791B2 (en) 1999-03-25 2006-08-01 Genesis Research & Development Corporation Limited Methods for enhancing immune responses by fibroblast growth factor receptor 5 polypeptides
US7473528B2 (en) * 1999-01-06 2009-01-06 Genenews Inc. Method for the detection of Chagas disease related gene transcripts in blood
US7951906B2 (en) 2002-12-20 2011-05-31 Enkam Pharmaceuticals A/S Compounds capable of interacting with a cell-surface fibroblast growth factor receptor
US8540989B2 (en) 2007-07-02 2013-09-24 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US8802097B2 (en) 2011-07-15 2014-08-12 Oncomed Pharmaceuticals, Inc. Anti-RSPO1 antibodies
US8921056B2 (en) 2003-10-10 2014-12-30 Deutsches Krebsforschungszentrum Compositions for diagnosis and therapy of diseases associated with aberrant expression of futrins (R-Spondins) and/or Wnt
US8926970B2 (en) 2006-10-20 2015-01-06 Deutsches Krebsforschungszentrum Stiftung des öffentlichen Rechts Rspondin antibodies as inhibiting factors of angiogenesis and vaculogenesis
US9181333B2 (en) 2012-07-13 2015-11-10 Oncomed Pharmaceuticals, Inc. RSPO3 binding agents and uses thereof
US9228020B2 (en) 2006-09-29 2016-01-05 Oncomed Pharmaceuticals, Inc. Compositions and methods for diagnosing and treating cancer
US9480744B2 (en) 2010-09-10 2016-11-01 Oncomed Pharmaceuticals, Inc. Methods for treating melanoma
US10064937B2 (en) 2014-09-16 2018-09-04 Oncomed Pharmaceuticals, Inc. Treatment of dermal fibrosis

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US5536637A (en) * 1993-04-07 1996-07-16 Genetics Institute, Inc. Method of screening for cDNA encoding novel secreted mammalian proteins in yeast
WO1997007198A2 (en) * 1995-08-11 1997-02-27 Genetics Institute, Inc. Dna sequences and secreted proteins encoded thereby

Cited By (31)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7473528B2 (en) * 1999-01-06 2009-01-06 Genenews Inc. Method for the detection of Chagas disease related gene transcripts in blood
US6797271B2 (en) * 1999-03-25 2004-09-28 Genesis Research & Development Corporation Limited Methods for enhancing immune responses by fibroblast growth factor receptor 5 polypeptides
US7083791B2 (en) 1999-03-25 2006-08-01 Genesis Research & Development Corporation Limited Methods for enhancing immune responses by fibroblast growth factor receptor 5 polypeptides
US6780987B1 (en) * 1999-12-10 2004-08-24 Trustees Of The Tufts College β-cap73 control of normal and abnormal cell migration
US6824973B2 (en) 2000-02-03 2004-11-30 Kirin Beer Kabushiki Kaisha Method of promoting stem cell proliferation or survival by contacting a cell with a stem cell factor-like polypeptide
US7319141B2 (en) 2000-02-03 2008-01-15 Kirin Beer Kabushiki Kaisha Stem cell growth factor-like polypeptides
WO2001077169A3 (en) * 2000-04-05 2002-07-04 Kirin Brewery Methods and materials relating to stem cell growth factor-like polypeptides and polynucleotides
WO2001077169A2 (en) * 2000-04-05 2001-10-18 Kirin Beer Kabushiki Kaisha Methods and materials relating to stem cell growth factor-like polypeptides and polynucleotides
US7951906B2 (en) 2002-12-20 2011-05-31 Enkam Pharmaceuticals A/S Compounds capable of interacting with a cell-surface fibroblast growth factor receptor
US8921056B2 (en) 2003-10-10 2014-12-30 Deutsches Krebsforschungszentrum Compositions for diagnosis and therapy of diseases associated with aberrant expression of futrins (R-Spondins) and/or Wnt
US9081011B2 (en) 2003-10-10 2015-07-14 Deutsches Krebsforschungszentrum Compositions for diagnosis and therapy of diseases associated with aberrant expression of futrins (R-spondins) and/or Wnt
US8951745B2 (en) 2003-10-10 2015-02-10 Deutsches Krebsforschungszentrum Compositions for diagnosis and therapy of diseases associated with aberrant expression of futrins (R-Spondins) and/or Wnt
US9228020B2 (en) 2006-09-29 2016-01-05 Oncomed Pharmaceuticals, Inc. Compositions and methods for diagnosing and treating cancer
US9226963B2 (en) 2006-10-20 2016-01-05 Deutsches Krebsforschungszentrum Stiftung Des Offentlichen Rechts Antagonist anti-Rspondin3 antibodies
US8926970B2 (en) 2006-10-20 2015-01-06 Deutsches Krebsforschungszentrum Stiftung des öffentlichen Rechts Rspondin antibodies as inhibiting factors of angiogenesis and vaculogenesis
US10538563B2 (en) 2006-10-20 2020-01-21 Deutsches Krebsforschungszentrum Stiftung Des Offentlichen Rechts Rspondins as modulators of angiogenesis and vasculogenesis
US10273276B2 (en) 2006-10-20 2019-04-30 Deutsches Krebsforschungszentrum Stiftung des öffentlichen Rechts Rspondins as modulators of angiogenesis and vasculogenesis
US8540989B2 (en) 2007-07-02 2013-09-24 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US9717794B2 (en) 2007-07-02 2017-08-01 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US9040044B2 (en) 2007-07-02 2015-05-26 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US9610348B2 (en) 2007-07-02 2017-04-04 Oncomed Pharmaceuticals, Inc Compositions and methods for treating and diagnosing cancer
US8883736B2 (en) 2007-07-02 2014-11-11 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US8628774B2 (en) 2007-07-02 2014-01-14 Oncomed Pharmaceuticals, Inc. Compositions and methods for treating and diagnosing cancer
US9480744B2 (en) 2010-09-10 2016-11-01 Oncomed Pharmaceuticals, Inc. Methods for treating melanoma
US9644034B2 (en) 2011-07-15 2017-05-09 Oncomed Pharmaceuticals, Inc. Anti-RSPO2 antibodies and uses thereof
US9109024B2 (en) 2011-07-15 2015-08-18 Oncomed Pharmaceuticals, Inc. Anti-RSPO1 antibodies and uses thereof
US9109025B2 (en) 2011-07-15 2015-08-18 Oncomed Pharmaceuticals, Inc. Anti-RSPO2 antibodies
US8802097B2 (en) 2011-07-15 2014-08-12 Oncomed Pharmaceuticals, Inc. Anti-RSPO1 antibodies
US9598497B2 (en) 2012-07-13 2017-03-21 Oncomed Pharmaceuticals, Inc. RSPO3 binding agents and uses thereof
US9181333B2 (en) 2012-07-13 2015-11-10 Oncomed Pharmaceuticals, Inc. RSPO3 binding agents and uses thereof
US10064937B2 (en) 2014-09-16 2018-09-04 Oncomed Pharmaceuticals, Inc. Treatment of dermal fibrosis

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