WO1996032504A3 - Solid phase sequencing of biopolymers - Google Patents

Solid phase sequencing of biopolymers Download PDF

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Publication number
WO1996032504A3
WO1996032504A3 PCT/US1996/005136 US9605136W WO9632504A3 WO 1996032504 A3 WO1996032504 A3 WO 1996032504A3 US 9605136 W US9605136 W US 9605136W WO 9632504 A3 WO9632504 A3 WO 9632504A3
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WO
WIPO (PCT)
Prior art keywords
probes
nucleic acid
target
nucleic acids
determined
Prior art date
Application number
PCT/US1996/005136
Other languages
French (fr)
Other versions
WO1996032504A2 (en
Inventor
Charles R Cantor
Hubert Koster
Cassandra L Smith
Dong-Jing Fu
Original Assignee
Univ Boston
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US08/614,151 external-priority patent/US6436635B1/en
Application filed by Univ Boston filed Critical Univ Boston
Priority to EP96912743A priority Critical patent/EP0830460A1/en
Priority to AU55446/96A priority patent/AU5544696A/en
Priority to JP8531243A priority patent/JPH11503611A/en
Publication of WO1996032504A2 publication Critical patent/WO1996032504A2/en
Publication of WO1996032504A3 publication Critical patent/WO1996032504A3/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6872—Methods for sequencing involving mass spectrometry
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

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  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)

Abstract

This invention relates to methods for detecting and sequencing target nucleic acid sequences, and double-stranded nucleic acid sequences, to nucleic acid probes, to mass modified nucleic acid probes, to arrays of probes useful in these methods and to kits and systems which contain these probes. Useful methods involve hybridizing the nucleic acids or nucleic acids which represent complementary or homologous sequences of the target to an array of nucleic acid probes. These probes comprise a single-stranded portion, an optional double-stranded portion and a variable sequence within the single-stranded portion. The molecular weights of the hybridized nucleic acids of the set can be determined by mass spectroscopy, and the sequence of the target determined from the molecular weights of the fragments. Nucleic acids whose sequences can be determined include DNA or RNA in biological samples such as patient biopsies and environmental samples. Probes may be fixed to a solid support such as a hybridization chip to facilitate automated molecular weight analysis and identification of the target sequence.
PCT/US1996/005136 1995-04-11 1996-04-10 Solid phase sequencing of biopolymers WO1996032504A2 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
EP96912743A EP0830460A1 (en) 1995-04-11 1996-04-10 Solid phase sequencing of biopolymers
AU55446/96A AU5544696A (en) 1995-04-11 1996-04-10 Solid phase sequencing of biopolymers
JP8531243A JPH11503611A (en) 1995-04-11 1996-04-10 Solid-phase sequencing of biopolymers

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US41999495A 1995-04-11 1995-04-11
US42000995A 1995-04-11 1995-04-11
US08/420,009 1995-04-11
US08/419,994 1995-04-11
US08/614,151 US6436635B1 (en) 1992-11-06 1996-03-12 Solid phase sequencing of double-stranded nucleic acids
US08/614,151 1996-03-12

Publications (2)

Publication Number Publication Date
WO1996032504A2 WO1996032504A2 (en) 1996-10-17
WO1996032504A3 true WO1996032504A3 (en) 1996-11-14

Family

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Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US1996/005136 WO1996032504A2 (en) 1995-04-11 1996-04-10 Solid phase sequencing of biopolymers

Country Status (5)

Country Link
EP (1) EP0830460A1 (en)
JP (1) JPH11503611A (en)
AU (1) AU5544696A (en)
CA (1) CA2218188A1 (en)
WO (1) WO1996032504A2 (en)

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USRE44693E1 (en) 1996-11-06 2014-01-07 Sequenom, Inc. Beads bound to a solid support and to nucleic acids
US8993271B2 (en) 1997-04-01 2015-03-31 Illumina, Inc. Method of nucleic acid amplification
US8999266B2 (en) 2000-10-30 2015-04-07 Agena Bioscience, Inc. Method and apparatus for delivery of submicroliter volumes onto a substrate
US9034798B2 (en) 2003-01-16 2015-05-19 Caprotec Bioanalytics Gmbh Capture compounds, collections thereof and methods for analyzing the proteome and complex compositions
US9249456B2 (en) 2004-03-26 2016-02-02 Agena Bioscience, Inc. Base specific cleavage of methylation-specific amplification products in combination with mass analysis
US9394565B2 (en) 2003-09-05 2016-07-19 Agena Bioscience, Inc. Allele-specific sequence variation analysis
US9512478B2 (en) 2007-02-02 2016-12-06 Illumina Cambridge Limited Methods for indexing samples and sequencing multiple polynucleotide templates

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Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
USRE44693E1 (en) 1996-11-06 2014-01-07 Sequenom, Inc. Beads bound to a solid support and to nucleic acids
US8993271B2 (en) 1997-04-01 2015-03-31 Illumina, Inc. Method of nucleic acid amplification
US8999266B2 (en) 2000-10-30 2015-04-07 Agena Bioscience, Inc. Method and apparatus for delivery of submicroliter volumes onto a substrate
US9034798B2 (en) 2003-01-16 2015-05-19 Caprotec Bioanalytics Gmbh Capture compounds, collections thereof and methods for analyzing the proteome and complex compositions
US9394565B2 (en) 2003-09-05 2016-07-19 Agena Bioscience, Inc. Allele-specific sequence variation analysis
US9249456B2 (en) 2004-03-26 2016-02-02 Agena Bioscience, Inc. Base specific cleavage of methylation-specific amplification products in combination with mass analysis
US9512478B2 (en) 2007-02-02 2016-12-06 Illumina Cambridge Limited Methods for indexing samples and sequencing multiple polynucleotide templates

Also Published As

Publication number Publication date
EP0830460A1 (en) 1998-03-25
CA2218188A1 (en) 1996-10-17
JPH11503611A (en) 1999-03-30
AU5544696A (en) 1996-10-30
WO1996032504A2 (en) 1996-10-17

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