CN1248702A - PCR microarray probe circulating detection type biological chip - Google Patents
PCR microarray probe circulating detection type biological chip Download PDFInfo
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- CN1248702A CN1248702A CN99114416A CN99114416A CN1248702A CN 1248702 A CN1248702 A CN 1248702A CN 99114416 A CN99114416 A CN 99114416A CN 99114416 A CN99114416 A CN 99114416A CN 1248702 A CN1248702 A CN 1248702A
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Abstract
The invented PCR microarray probe circulating detection type biochip relates to a new scheme of PCR microarray probe hybrid detection type biochip, specially it is a new type biochip which adopts gas or liquid reciprocating flow mode and multi-temperature zone PCR gene selective amplification and combines with solid-phase microprobe array technology to make gene diagnosis. It is characterized by that PCR circulation process and probe hybrid detection are designed in a PCR microarray probe chip, and the four microreactors of denaturation, annealing, elongation and microarray probe hybridization of PCR are formed into a reciprocating or encircling circulating system, and the temperatures of denaturation, annealing, elongation and hybridization in the circulating system are independently and thermostaticly controlled. Several PCR microarray probe type chip systems can be integrated on the same chip.
Description
PCR microarray probe circulating detection type biological chip of the present invention relates to is new departure of the detection type biochip that combines with probe of a kind of PCR, especially adopt liquid circulating type or the amplification of reciprocating type many temperature provinces of type of flow polymerase chain reaction gene Selection, the new bio chip that carries out gene diagnosis in conjunction with solid phase microprobe array technology.
Biochip mainly is meant by plane Micrometer-Nanometer Processing Technology and supermolecule self-assembling technique, in microanalysis unit and the system that the solid chip surface makes up.Biochip can integrate many difference in functionality devices, for example, the pre-service of biological sample, the extraction of inhereditary material, the amplification of specific gene fragment, biological probe array and Capillary Electrophoresis form whole microfluid system, with realize to compound, protein, nucleic acid, cell and other biological components accurately, fast, the screening or the detection of large information capacity.Genetic chip is a most important class biochip, and it the is integrated gene probe of dense arrangement in a large number can be analyzed a large amount of genes at short notice, makes people can promptly read and analyze the program of life.
Biochip has extremely important meaning on biological detection, medical test, drug screening and gene sequencing.For example in biology, along with molecular biological continuous development, since the Human Genome Project particularly highly visible was implemented, the data of related nucleic acid, protein sequence and structure were exponential increase.And the most challenging work of next century is exactly after the Human Genome Project is finished, and promptly at the back era gene, how we use a large amount of biomolecule information services in human society, and makes medical science, treatment produce basic revolution.In medical science, " the subordinate phase medical science on system, organ, tissue, the cell level " transforms to " on the gene level; DNA → RNA → protein → protein and nucleic acid interaction, and the phase III medical science on they and the environmental interaction level ".This gene diagnosis of carrying out on molecular level and gene therapy will be familiar with the root that disease produces at all, and will be hopeful basic understanding and treat the major disease that comprises cancer.The fundamental change of these biology, medical science, a mensuration and the analysis that basic prerequisite is a gene order.Can carry out gene sequencing and analysis effectively apace, will have influence on the enforcement of the Human Genome Project, thereby influence further developing of biology, medical science.The method that adopted of tradition gene sequencing comprises a series of numerous and diverse steps such as chemical reaction, gel electrophoresis, and these method spended times are longer, and operates complicated, especially time-consuming and be not suitable for portability and check order fast aspect large scale sequencing.Traditional gene order surveying method is being carried out in the improved process, is that the biochip technology of representative arises at the historic moment with the genetic chip.Biochip technology is with many discontinuous analytic process related in the life science, and as specimen preparation, chemical reaction and analyzing and testing etc. are by adopting microelectronics, technologies such as micromechanics are integrated in the chip, make it serialization, integrated, microminiaturization and robotization.The strong means that provide are obtained and analyzed to the maturation of this technology and use and will bring a revolution in medical diagnosis on disease and the life science association areas such as treatment, new drug development, judicial expertise, food and environment of next century for biological information.
PCR (polymerase chain reaction, polymerase chain reaction) is as the method for a kind of selectivity outer-gene amplification, owing to just can make DNA cloning 10 through 25～35 after taking turns circulation
6Doubly, in scientific research and medical test, be used widely for many years.But, forbidden being used for clinical diagnosis by health ministry from June, 98 because there are defectives such as false positive in PCR.Trace it to its cause, the labile factor that many experiment conditions in the first PCR process (primer design and selection, material mixture ratio, reaction time, temperature, cycle period etc.) cause causes producing the mistake amplification of PCR.It two is that the follow-up electrophoretic detection of PCR process only can be judged the fragment that whether obtains length-specific, and can't determine its concrete sequence.Its three, PCR reaction is two discrete processes with detecting, complex operation and increased the chance of polluting.Therefore, for testing conditions and equipment limited in, infirmary, the accuracy of the detection of PCR has been subjected to very big influence.In addition, current pcr amplification process has very high requirement for technical level of operators and quality.
Biological (gene) chip is an international research focus in recent years always, and advances just with surprising rapidity.Existing in the world many companies such as the U.S. enter the biochip field, work out PCR and the mutually integrated biochip of DNA array.These systems are PCR micro reaction pool of preparation on chip usually, by controlling the temperature cycles of little reaction, carries out the amplification of gene.In the gene introduced cross pond after then will increasing,, detect with the hybridization of solid phase micro probe array.Affymetrix company then further is prepared into the microfluid pipeline to the PCR micro reaction pool.But the chip that is used for scientific research and medical test at present is one or several individual devices mostly.Although the existing report that round pcr and chip detection are integrated, but be characterized in that whole PCR process carries out in a micro reaction pool, thereby, need be to the cooling that heats up repeatedly of the same position of device, this can't carry out dynamic tracking and real-time quantitative analysis to PCR result.And, prolonged the working time because the cooling that heats up needs the regular hour.
The objective of the invention is to exist weak point that a kind of PCR microarray probe circulating detection type biological chip is provided at present round pcr and chip detection, this is a kind of PCR of control reaction solution carries out circulating type or reciprocating type mobile amplification in the different temperatures zone new departure, and round pcr and gene microarray probe technique be integrated, constitute an integrated-type biochip, both simplified operation steps, shorten the PCR time, raise the efficiency, the reaction system and the external world can be carried out tight effectively isolation again, and make pcr amplification one probe hybridization testing process integrated, with the sex change in the PCR circulation, annealing, extension process and micro probe array chip constitute an integral body, can be with sex change, annealing, the temperature of extending and hybridizing four steps is controlled at steady temperature respectively, thereby can avoid repeatedly intensification temperature-fall period and because the influence that the error of temperature control is brought.
The PCR microarray probe circulating detection type biological chip takes following scheme to realize: the PCR microarray probe circulating detection type biological chip be with PCR cyclic process and probe hybridization detection design in a PCR micro probe array chip, the sex change annealing of PCR, extend four microreactors with the micro probe array hybridization reaction, constitute a reciprocating type or circulating type circulation system, thereby follow the tracks of each time of PCR round-robin efficient very easily, sex change in the above-mentioned PCR microarray probe circulating detection type biological chip circulating system, annealing, extend, separately temperature of hybridization is independent thermostatically controlled, integrated a plurality of different PCR micro probe array cake core systems that can be used for measuring on same chip.Sex change, annealing, to extend each microreactor can be various forms, as little groove, microtubule, little pond etc.Micro probe array can be low-density or high density, single function or the multifunctional array formula probe that the preparation of point quadrat method is synthesized or passed through to original position.Annealing, extend each microreactor and can be merged into one.After the reaction of PCR microarray probe circulating detection type biological chip is finished, detect hybridization signal and provide testing result.
The present invention proposes a kind of PCR of control reaction solution carry out in the different temperatures zone around or new departure of reciprocating type mobile amplification, and round pcr and gene microarray probe technique be integrated, constitute an integrated-type biochip, wherein microarray can be high density or the preparation of low-density, point sample or original position synthetic, single function or multi-functional.Both the simplified operation step shortened the PCR time, raised the efficiency, the reaction system and the external world can be carried out tight effective isolation again, and make pcr amplification-probe hybridization testing process chip integrated, need not carry out electrophoretic analysis, but directly detect hybridization signal and provide testing result.Because probe hybridization has specificity, thereby can get rid of electrophoresis and can't get rid of false-positive defective.The more important thing is, sex change, annealing, extension process and micro probe array chip in the PCR circulation are constituted an integral body, the temperature of sex change, annealing, extension and four steps of hybridization steady temperature can be controlled at respectively, thereby repeatedly intensification temperature-fall period and because the influence that the error of temperature control is brought can be avoided.Owing to adopted circulating type or reciprocating type mobile pcr amplification technology and hybridization to detect integrated technique, the size of each core assembly blade unit reduces greatly, thereby can be integrated in tens groups or core assembly blade unit up to a hundred on the chip board, can carry out the detection of multiple biological sample simultaneously.Because the present invention constitutes a reciprocating type circulating system with PCR process and micro probe array chip, not only can be in the circulation of PCR repeatedly back testing result, more can follow the tracks of very easily and detect each round-robin efficient of PCR, thereby obtain linear PCR result, and carry out dynamic quantitative test, really can reach quick, accurate, robotization, pollution-free.
The PCR microarray probe circulating detection type chip that the present invention proposes can have multiple design proposal, and the present invention is further illustrated below with reference to accompanying drawing.
Fig. 1 is the circulating PCR microarray probe circulating detection type of a present invention chip synoptic diagram.
Fig. 2 is one of the reciprocating type mobile PCR microarray probe circulating detection type chip of a present invention front view.
Fig. 3 is one of the reciprocating type mobile PCR microarray probe circulating detection type chip of a present invention left view.
Fig. 4 is two synoptic diagram of the reciprocating type mobile PCR microarray probe circulating detection type chip of the present invention.
Fig. 5 is three synoptic diagram of the reciprocating type mobile PCR microarray probe circulating detection type chip of the present invention.
Illustrate below.
With reference to accompanying drawing, the PCR microarray probe circulating detection type biological chip be with PCR cyclic process and probe hybridization detection design in a PCR micro probe array chip, the sex change annealing of PCR, extend four microreactors with the micro probe array hybridization reaction, constitute a reciprocating type or circulating type circulation system, thereby follow the tracks of each time of PCR round-robin efficient very easily, sex change in the above-mentioned PCR microarray probe circulating detection type biological chip circulating system, annealing, extend, separately temperature of hybridization is independent thermostatically controlled, integrated a plurality of different PCR micro probe array cake core systems that can be used for measuring on same chip.Sex change, annealing, to extend each microreactor can be various forms, as little groove, microtubule, little pond etc.Micro probe array can be low-density or high density, single function or the multifunctional array formula probe that the preparation of point quadrat method is synthesized or passed through to original position.Annealing, extend each microreactor and can be merged into one.After the reaction of PCR microarray probe circulating detection type biological chip is finished, detect hybridization signal and provide testing result.
With reference to accompanying drawing 1, the circulating type PCR microarray probe circulating detection type chip that the present invention proposes, the sex change of PCR process is carried out in the T1 micro-fluid reactor, anneals and extends among microreactor T2 and the T3 and carry out, and T4 is a micro probe array.Micro probe array can be low-density or high density, single function or the multi-functional array probe that the preparation of point sample method is synthesized or passed through to original position.V1 and V2 are T-valve.Above-mentioned each element (T1, T2, T3, T4, V1, V2) constitutes a PCR-microarray probe circulating detection type chip chip-1, can form chip chip board more than by a plurality of chip-1.Become integrated a plurality of different sample P CR micro probe array cake core systems that can be used for measuring on same chip.
With reference to accompanying drawing 2,3, the reciprocating type mobile PCR micro probe array that the present invention proposes detects one of cake core.Fig. 2 is a front view, and Fig. 3 is a left view, has little groove 1,2,3,4 on substrate A ... n, this communicates with adjacent little groove with-micropore respectively at groove two ends slightly, and substrate A is divided into 4 humidity province T1, T2, T3, T4.Correspond respectively to the temperature of sex change, annealing, extension and the hybridization reaction of PCR process.Each little groove all has micro probe array in the T4 district, have four grooves vertical with above-mentioned little groove at the reverse side of substrate A.Sex change, annealing, extension, each microreactor can be various types, as little groove, microtubule, little pond etc. one of them.1,2,3,4 ... all be furnished with the little iron block that two fritters and respective groove are coincide and can be free to slide therein again among the n.This two little iron blocks surface is covered with a hydrophobic organic polymer thin film.Between the two little iron blocks of the little groove of the prior injection of PCR reaction solution, cover sealing with a transparent membrane then, the substrate A of little groove and the transparent material formation chip that substrate A goes up covering are arranged.During use, sample a, b, c, d ... n penetrates film by syringe or other injector and injects the PCR reaction solution, is fixed with slide then.Behind the jog mixing, can begin PCR reaction, at first carry out sex change, drive little iron block in little groove by magnet N then and move on to the T2 district rapidly together with reaction system solution and anneal, move on to the T3 district again and extend in the T1 district; Move on to beginning second circulation in T1 district after the extension rapidly, or move on to the T4 district earlier and carry out moving on to T1 again behind the hybridization reaction and begin second circulation.So continue cyclic process, up to obtaining all results.
With reference to accompanying drawing 4, the reciprocating type mobile PCR micro probe array that the present invention proposes detects two of cake core.Be not to be that with accompanying drawing 2,3 design differences driving in little groove little iron block and then driving PCR reaction liquid by magnet carries out PCR and circulate, but drive PCR solution 1 by pressure differential by pilot-gas F1, F2,2 ... therefore n to-and-fro movement in little groove does not need magnet.The principle of all the other structures is with accompanying drawing 2,3.
With reference to accompanying drawing 5, the reciprocating type mobile PCR-micro probe array that the present invention proposes detects three of cake core, be little groove 1 on the chip with accompanying drawing 2,3 differences, 2 ... the n two ends communicate with groove no longer respectively, but in addition with little groove with above-mentioned 1,2 ... each groove two ends of n independently link up.So both kept the PCR system to be in a pressure balance all the time, and be convenient to magnet N and drive little iron block and drive the PCR reaction liquid, isolated fully each other again, do not polluted mutually.Remaining design is with accompanying drawing 2,3.
Embodiment 1 (linear quantitative analysis): with reference to accompanying drawing 1, the use of the PCR microarray probe circulating detection type biological chip of hepatitis type B virus.To import among the T1 by F1 by easy steps pre-service gained dna profiling and PCR reactant liquor, 94 ℃ of sex change 45 seconds, flow into rapidly then among the T2 in 45 ℃ of annealing 60 seconds, extended 2 minutes in 72 ℃ at T3 then, 1 enter the hybridization of T4 and micro probe array through V1 along the path again, detect this PCR cycle efficieny.Go into T1 through V2 by path 3 then and begin second PCR circulation.So, can obtain each PCR round-robin efficient, and carry out the quantitative test monitoring.30 times circulation back liquid is derived by export mouth F2 through V2.Detect hybridization signal and provide the result.
Embodiment 2 (not doing the linear quantitative analysis): referring to accompanying drawing 1, the use of the PCR microarray probe circulating detection type biological chip of hepatitis type B virus.It is (mixed with the PCR reactant liquor after pre-service to get patient's blood sample, import among the T1 by F1, through (94 ℃ of following flow process T1,45 seconds) → T2 (45 ℃, 60 seconds) → T3 (72 ℃, 2 minutes) → V1 → passage 2 → T1, after carrying out 30 circulations, reaction liquid is hybridized with micro probe array in V1, passage 1 importing T4, and the hybridization back is detected hybridization signal and is also provided the result by export mouth F2 tapping.
Embodiment 3 (linear quantitative analysis): referring to accompanying drawing 2,3, the use of the PCR microarray probe circulating detection type biological chip of multi-functional multiple hepatitis virus.One group of pre-service gained patients serum is seen through little groove 1 that diaphragm seal injects accompanying drawing 2,3 PCR microarray probe circulating detection type biological chips respectively, 2,3, in the PCR solution between the two little iron blocks among the n, compress with glass plate then, and glass plate and entire chip are fixed together the jog mixing with clip.With magnet N sample is moved on to T1 district (94 ℃) sex change 45 seconds by controller C5, move on to T2 (45 ℃) district annealing 60 seconds then rapidly, move on to T3 district (72 ℃) then and extended 2 minutes, move on to the hybridization of T4 district and micro probe array again.Detect the PCR cycle efficieny.Move on to second PCR circulation of T1 district beginning subsequently, so circulate 30 times.Can obtain each PCR round-robin efficient, and carry out the quantitative test monitoring.Detect hybridization signal and provide the result.
Embodiment 4 (not doing the linear quantitative analysis).Referring to accompanying drawing 4, the PCR microarray probe circulating detection type biological chip of highdensity hepatitis type B virus detects simple point mutation.Get patient's blood sample (after pre-service), 1,2, n sees through film and injects the little groove 1 of Fig. 2,2 ... in the PCR solution between two little iron blocks among the n, compress with glass plate, and glass plate and entire chip are fixed together, again chip is embedded on 4 heating elements in the PCR instrument that designs voluntarily with clip.With magnet N sample is moved on to T1 district (94 ℃) sex change 45 seconds by controller then, move on to T2 district (45 ℃) annealing 60 seconds again, move on to T3 district (72 ℃) again and extended 2 minutes, move on to the T1 district then rapidly, begin second PCR circulation, after 30 PCR circulations, move on to the hybridization of T4 district and micro probe array.Detect hybridization signal and provide the result.
Embodiment 5,6 is similar to embodiment 3,4 respectively, but reaction liquid move through regulation and control little groove 1,2 ... the pressure differential at n two ends is controlled (referring to accompanying drawing 4).
Embodiment 7,8.Operation steps is with embodiment 3,4, but uses the chip of structure shown in Figure 5 instead.
The medium and small black patch of accompanying drawing
Be little iron block, shade
Be the probe region.
Claims (4)
1. PCR microarray probe circulating detection type biological chip, it is characterized in that 1) with PCR cyclic process and probe hybridization detection design in a PCR micro probe array chip, 2) sex change of PCR, annealing, extend reciprocating type or circulating type circulation system of four microreactors formations with the micro probe array hybridization reaction, thereby follow the tracks of each time of PCR round-robin efficient very easily, 3) sex change in the above-mentioned PCR microarray probe circulating detection type biological chip circulating system, annealing, extend, hybridization temperature separately is independent thermostatically controlled, 4) and integrated a plurality of PCR micro probe array cake core systems that can be used for measuring different samples on same chip.
2. according to the PCR microarray probe circulating detection type biological chip of claim 1, it is characterized in that sex change, annealing, extend each microreactor can be one of little groove, microtubule, little pond form.
3. according to the PCR microarray probe circulating detection type biological chip of claim 1, it is characterized in that used micro probe array can be that original position is synthetic or by the preparation of point quadrat method, low-density or high density, single function or multi-functional array probe.
4. according to the PCR microarray probe circulating detection type biological chip of claim 1, it is characterized in that annealing, two microreactors of extension can be merged into one.
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| Application Number | Priority Date | Filing Date | Title |
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| CN 99114416 CN1117282C (en) | 1999-09-03 | 1999-09-03 | PCR microarray probe circulating detection type biological chip |
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| CN 99114416 CN1117282C (en) | 1999-09-03 | 1999-09-03 | PCR microarray probe circulating detection type biological chip |
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| CN1117282C CN1117282C (en) | 2003-08-06 |
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Cited By (9)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2002002794A2 (en) * | 2000-07-04 | 2002-01-10 | Capital Biochip Company Ltd. | Integrated microarray devices |
| WO2003019189A1 (en) * | 2001-08-29 | 2003-03-06 | Wei Cao | Homogeneous phase gene microarray |
| EP1442136A1 (en) * | 2001-11-10 | 2004-08-04 | Samsung Electronics Co., Ltd. | Apparatus for circulating carrier fluid |
| US7338760B2 (en) | 2001-10-26 | 2008-03-04 | Ntu Ventures Private Limited | Sample preparation integrated chip |
| WO2009156895A1 (en) | 2008-06-23 | 2009-12-30 | Koninklijke Philips Electronics N.V. | Amplification of nucleic acids using temperature zones |
| CN1987430B (en) * | 2006-12-20 | 2011-01-12 | 东华大学 | Integrated multifunction chip instrument |
| US8273529B2 (en) * | 2006-02-08 | 2012-09-25 | Canon Kabushiki Kaisha | Method for hybridizing nucleic acids and hybridization apparatus |
| CN101868722B (en) * | 2007-10-12 | 2014-11-12 | 比格科技私人有限公司 | Micro chip |
| CN112899152A (en) * | 2021-02-02 | 2021-06-04 | 中国科学院苏州纳米技术与纳米仿生研究所 | Micro-fluidic chip for rapid amplification and detection of nucleic acid, detection method and system |
-
1999
- 1999-09-03 CN CN 99114416 patent/CN1117282C/en not_active Expired - Fee Related
Cited By (17)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2002002794A3 (en) * | 2000-07-04 | 2002-08-15 | Capital Biochip Co Ltd | Integrated microarray devices |
| US6703203B2 (en) | 2000-07-04 | 2004-03-09 | Capital Biochip Company, Ltd. | Integrated microarray devices |
| US6998236B2 (en) | 2000-07-04 | 2006-02-14 | Capitalbio Corporation | Methods for detecting interaction between a test moiety and a plurality of target moieties |
| WO2002002794A2 (en) * | 2000-07-04 | 2002-01-10 | Capital Biochip Company Ltd. | Integrated microarray devices |
| WO2003019189A1 (en) * | 2001-08-29 | 2003-03-06 | Wei Cao | Homogeneous phase gene microarray |
| US7338760B2 (en) | 2001-10-26 | 2008-03-04 | Ntu Ventures Private Limited | Sample preparation integrated chip |
| EP1442136A4 (en) * | 2001-11-10 | 2010-10-20 | Samsung Electronics Co Ltd | Apparatus for circulating carrier fluid |
| EP1442136A1 (en) * | 2001-11-10 | 2004-08-04 | Samsung Electronics Co., Ltd. | Apparatus for circulating carrier fluid |
| US7329535B2 (en) | 2001-11-10 | 2008-02-12 | Samsung Electronics Co., Ltd. | Apparatus for circulating carrier fluid |
| US8273529B2 (en) * | 2006-02-08 | 2012-09-25 | Canon Kabushiki Kaisha | Method for hybridizing nucleic acids and hybridization apparatus |
| CN1987430B (en) * | 2006-12-20 | 2011-01-12 | 东华大学 | Integrated multifunction chip instrument |
| CN101868722B (en) * | 2007-10-12 | 2014-11-12 | 比格科技私人有限公司 | Micro chip |
| CN102076869A (en) * | 2008-06-23 | 2011-05-25 | 皇家飞利浦电子股份有限公司 | Amplification of nucleic acids using temperature zones |
| WO2009156895A1 (en) | 2008-06-23 | 2009-12-30 | Koninklijke Philips Electronics N.V. | Amplification of nucleic acids using temperature zones |
| CN105441538A (en) * | 2008-06-23 | 2016-03-30 | 皇家飞利浦电子股份有限公司 | Amplification of nucleic acids using a plurality of temperature zones |
| CN112899152A (en) * | 2021-02-02 | 2021-06-04 | 中国科学院苏州纳米技术与纳米仿生研究所 | Micro-fluidic chip for rapid amplification and detection of nucleic acid, detection method and system |
| CN112899152B (en) * | 2021-02-02 | 2023-11-17 | 中国科学院苏州纳米技术与纳米仿生研究所 | Microfluidic chip for rapid amplification and detection of nucleic acid, detection method and system |
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