CA2517291A1 - Ortho-substituted aryl and heteroaryl tie-2 modulators and methods of use - Google Patents

Ortho-substituted aryl and heteroaryl tie-2 modulators and methods of use Download PDF

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CA2517291A1
CA2517291A1 CA002517291A CA2517291A CA2517291A1 CA 2517291 A1 CA2517291 A1 CA 2517291A1 CA 002517291 A CA002517291 A CA 002517291A CA 2517291 A CA2517291 A CA 2517291A CA 2517291 A1 CA2517291 A1 CA 2517291A1
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optionally substituted
compound according
co2r3
substituted lower
ring system
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CA2517291C (en
Inventor
Jason Jevious Parks
Lynne Canne Bannen
S. David Brown
Wei Cheng
Atwood Kim Cheung
Lisa Esther Dalrymple
Sergey Epshteyn
Mohamed Abdulkader Ibrahim
Vasu Jammalamadaka
James William Leahy
Gary Lee Lewis
Morrison B. Mac
Larry W. Mann
John M. Nuss
Robin Tammie Noguchi
Brian Hugh Ridgway
Joan C. Sangalang
Kevin Luke Schnepp
Xian Shi
Matthew A. Williams
Wei Xu
Richard Khoury
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Exelixis Inc
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Exelixis, Inc.
Jason Jevious Parks
Lynne Canne Bannen
S. David Brown
Wei Cheng
Atwood Kim Cheung
Lisa Esther Dalrymple
Sergey Epshteyn
Mohamed Abdulkader Ibrahim
Vasu Jammalamadaka
James William Leahy
Gary Lee Lewis
Morrison B. Mac
Larry W. Mann
John M. Nuss
Robin Tammie Noguchi
Brian Hugh Ridgway
Joan C. Sangalang
Kevin Luke Schnepp
Xian Shi
Matthew A. Williams
Wei Xu
Richard Khoury
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Application filed by Exelixis, Inc., Jason Jevious Parks, Lynne Canne Bannen, S. David Brown, Wei Cheng, Atwood Kim Cheung, Lisa Esther Dalrymple, Sergey Epshteyn, Mohamed Abdulkader Ibrahim, Vasu Jammalamadaka, James William Leahy, Gary Lee Lewis, Morrison B. Mac, Larry W. Mann, John M. Nuss, Robin Tammie Noguchi, Brian Hugh Ridgway, Joan C. Sangalang, Kevin Luke Schnepp, Xian Shi, Matthew A. Williams, Wei Xu, Richard Khoury filed Critical Exelixis, Inc.
Publication of CA2517291A1 publication Critical patent/CA2517291A1/en
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    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/496Non-condensed piperazines containing further heterocyclic rings, e.g. rifampin, thiothixene
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
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    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D213/00Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members
    • C07D213/02Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members
    • C07D213/04Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom
    • C07D213/60Heterocyclic compounds containing six-membered rings, not condensed with other rings, with one nitrogen atom as the only ring hetero atom and three or more double bonds between ring members or between ring members and non-ring members having three double bonds between ring members or between ring members and non-ring members having no bond between the ring nitrogen atom and a non-ring member or having only hydrogen or carbon atoms directly attached to the ring nitrogen atom with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
    • C07D213/72Nitrogen atoms
    • C07D213/75Amino or imino radicals, acylated by carboxylic or carbonic acids, or by sulfur or nitrogen analogues thereof, e.g. carbamates
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D239/00Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings
    • C07D239/02Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings
    • C07D239/24Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members
    • C07D239/28Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, directly attached to ring carbon atoms
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    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
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    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/12Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings

Abstract

The present invention provides compounds for modulating protein kinase enzymatic activity for modulating cellular activities such as proliferation, differentiation, programmed cell death, migration and chemoinvasion. Compounds of the invention inhibit, regulate and/or modulate kinases, particularly Tie-2. Methods of using the compounds and pharmaceutical compositions thereof to treat kinase-dependent diseases and conditions are also an aspect of the invention.

Claims (50)

1. A compound for modulating kinase activity of Formula I, or a pharmaceutically acceptable salt, hydrate, or prodrug thereof, wherein, Ar is a five- to six-membered aromatic ring system containing between one and three heteroatoms, said five- to six-membered aromatic ring system substituted with -X and -Y-L-Z, in an ortho relationship to each other, and said five- to six-membered aromatic ring system optionally substituted with up to four R1;
each R1 is independently selected from -H, halogen, -CN, -NO2, -OR3, -N(R3)R3, -s(O)O-2R3' -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, -OC(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl;
optionally two of R1, together with the atoms to which they are attached, form a first ring system fused with Ar, said first ring system substituted with zero to three additional of R1;
X is selected from the following six formulae:
wherein, W is selected from -C(R2)(R2)-, -N(R4)-, -S(O)0-2-, and -O-;
n = 1 or 2;

p=0 or 1;
q is 1 to 3;
M is -OR3 or -N(R3)R4;
each R2 is independently selected from -H, halogen, oxo, -CN, -NH2, -NO2, -OR3, -N(R3)R3, -N(R3)R5, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -N(R3)C(O)N(R3)R3, -C(O)R3, -OC(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl;
two of R2, together with the atoms to which they are attached, can form an optionally substituted three- to seven-membered ring system;
each R3 is independently selected from -H, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl; or two of R3, when taken together with a common nitrogen to which they are attached, form an optionally substituted five- to seven-membered heterocyclyl ring, said optionally substituted five- to seven-membered heterocyclyl ring optionally containing at least one additional heteroatom selected from N, O, S, and P;
each R4 is independently selected from R3, -SO2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, and -C(O)R3;
Y is selected from -CH2-, -O-, -S(O)0-2-, -N(R3)-, and absent;
L is selected from -(CH2)1-3-, -(CH2)1-3N(R3)-, -(CH2)1-3O-, -(CH2)1-3S(O)0-2-and absent;
each of the aforementioned methylenes optionally substituted;
Z is a five- to seven-membered ring system or -R3, said five- to seven-membered ring system optionally substituted with zero to four of R5; and R5 is selected from -H, halogen, -CN, oxo, -NO2, -OR3, -N(R3)R4, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl; and optionally two of R5, together with the atoms to which they are attached, form a second ring system fused with said five- to seven-membered ring system, said second ring system substituted with zero to four of R5.
2. The compound according to claim 1, of formula II, wherein, A and E are each independently N or -C(R1)-; and G is selected from -S(O)0-2-, and -C(R1)=C(R1)-.
3. The compound according to claim 2, wherein Ar is selected from the following formulae.

4. The compound according to claim 3, wherein -Y-L-Z is selected from the following formulae, wherein g is zero to two; D is selected from -C(R5)(R5)-, -O-, -S(O)0-2-, and -N(R4)-; Q is =N- or -C(R5)-, T is selected from absent, -N(R3)-, -S- and -O-; and each methylene between Y and T is optionally substituted; provided that when both Y and T are heteroatoms then g must be two.
5. The compound according to claim 4, wherein Y is -O- or optionally substituted -CH2-.
6. The compound according to claim 5, wherein X is selected from the following formulae.

7. The compound according to claim 6, wherein R4a is selected from -SO2R3, -SO2N(R3)R4, -CO2R3, -C(O)N(R3)R4, and -C(O)R3.
8. The compound according to claim 7, wherein each R2 is independently selected from -H or optionally substituted lower alkyl.
9. The compound according to claim 8, wherein each R2 is independently selected from -H, haloalkyl, -C1-6alkyl-N(R3)R3, -C1-6alkyl-OR3, -C1-6alkyl-CO2R3, and -C1-6alkyl-C(O)N(R3)R3.
10. The compound according to claim 9, wherein R4a is -C(O)N(R3)R3 or-C(O)R3.
11. The compound according to claim 10, wherein -Y-L-Z is selected from the following formulae, wherein Y, T, and g are as described above.
12. The compound according to claim 11, wherein g is one or two.
13. The compound according to claim 12, wherein each R5 is independently selected from -H, halogen, -CN, -NH2, -NO2, -OR3, -N(R3)R4, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, and optionally substituted lower alkyl.
14. The compound according to claim 13, wherein -Y-L-Z is selected from the following formulae.

15. The compound according to claim 14, having formula III, wherein J is N or CH, and B is =N- or =C(R5)-.
16. The compound according to claim 15, wherein R3a is selected from optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl.
17. The compound according to claim 16, wherein R3a is selected from optionally substituted aryl and optionally substituted heteroaryl.
18. The compound according to claim 17, wherein R3a is optionally substituted phenyl.
19. The compound according to claim 18, wherein said optionally substituted phenyl is substituted with at least one of halogen, -CN, -CF3, -NH2, -NO2, -OR3, -N(R3)R3, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, optionally substituted lower alkyl, and optionally substituted aryl.
20. The compound according to claim 19, wherein said optionally substituted phenyl group is substituted with at least one trifluoromethyl group.
21. The compound according to claim 20, wherein said optionally substituted phenyl group is substituted with at least two trifluoromethyl groups
22. The compound according to claim 19, wherein said optionally substituted phenyl group is substituted with at least one lower alkyl group.
23. The compound according to claim 19, wherein R3b is -H.
24. The compound according to claim 23, wherein R4b is selected from R3, -H, -CO2R3, -C(O)N(R3)R4, and -C(O)R3.
25. The compound according to claim 24, wherein Ar is according to the formula below.

26. The compound according to claim 24, wherein Ar is according to the formula below.

27. The compound according to claim 24, wherein Ar is according to the formula below.

28. The compound according to claim 24, wherein Ar is according to the formula below.

29. The compound according to claim 24, wherein Ar is according to the formula below.

30. A compound for modulating kinase activity of Formula IV, or a pharmaceutically acceptable salt, hydrate, or prodrug thereof, wherein, Ar is selected from the following formulae:

each R1 is independently selected from -H, halogen, -CN, -NO2, -OR3, -N(R3)R3, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl;
optionally two of R1, together with the atoms to which they are attached, form a first ring system fused with Ar, said first ring system substituted with zero to three additional of R1;
each R2 is independently selected from -H, halogen, oxo, -CN, -NH2, -NO2, -OR3, -N(R3)R3, -N(R3)R5, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R3, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -N(R3)C(O)N(R3)R3, -C(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl;
two of R2, together with the atoms to which they are attached, can form an optionally substituted three- to seven-membered ring system;
each R3 is independently selected from -H, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl; or two of R3, when taken together with a common nitrogen to which they are attached, form an optionally substituted five- to seven-membered heterocyclyl ring, said optionally substituted five- to seven-membered heterocyclyl ring optionally containing at least one additional heteroatom selected from N, O, S, and P;
each R4 is independently selected from R3, -SO2R3, -S02N(R3)R3, -CO2R3, -C(O)N(R3)R3, and -C(O)R3;
Y is selected from optionally substituted -CH2-, -O-, -S-, and -N(R3)-;
L is selected from optionally substituted -CH2-, -O-, -S-, -N(R3)- and absent;
provided that Y and L are not both heteroatoms;
B is =N- or =C(H)-;
at each instance, R5 and R6 are independently selected from -H, halogen, -CN, -NO2, -OR3, -N(R3)R4, -S(O)0-2R3, -SO2N(R3)R3, -CO2R3, -C(O)N(R3)R, -N(R3)SO2R3, -N(R3)C(O)R3, -N(R3)CO2R3, -C(O)R3, optionally substituted lower alkyl, optionally substituted aryl, optionally substituted lower arylalkyl, optionally substituted heterocyclyl, and optionally substituted lower heterocyclylalkyl; and optionally two of R5, together with the atoms to which they are attached, form a ring system fused with the ring containing B according to formula IV, said ring system substituted with zero to two additional of R5.
31. The compound according to claim 30, wherein Y is -O- and L is optionally substituted -CH2-.
32. The compound according to claim 31, wherein at least one of R6 is optionally substituted lower alkyl.
33. The compound according to claim 32, wherein said at least one optionally substituted lower alkyl is meta- to the piperazine urea function as depicted in formula IV.
34. The compound according to claim 33, wherein R4a is selected from R3, -H, -CO2R3, -C(O)N(R3)R4, and -C(O)R3.
35. The compound according to claim 34, wherein R4a is selected from -H, -CO2R3, -C(O)N(R3)R4, and -C(O)R3.
36. The compound according to claim 35, wherein -Y-L- is -OCH2-.
37. The compound according to claim 36, wherein Ar is according to the formula below.

38. The compound according to claim 36, wherein Ar is according to the formula below.
39. The compound according to claim 36, wherein Ar is according to the formula below.
40. The compound according to claim 36, wherein Ar is according to the formula below.
41. The compound according to claim 36, wherein Ar is according to the formula below.
42. The compound according to claim 1, selected from Table 4.
19~

43. A pharmaceutical composition comprising the compound according to any one of claims 1 - 42 and a pharmaceutically acceptable carrier.
44. A metabolite of the compound or the pharmaceutical composition according to any one of claims 1 - 43.
45. A method of modulating the in vivo activity of a kinase, the method comprising administering to a subject an effective amount of a composition comprising at least one of the compound according to any of claims 1 - 42 and the pharmaceutical composition according to claim 43.
46. The method according to claim 45, wherein the kinase is Tie-2.
47. The method according to claim 46, wherein modulating the in vivo activity of Tie-2 comprises inhibition of Tie-2.
48. A method of treating diseases or disorders associated with uncontrolled, abnormal, and/or unwanted cellular activities, the method comprising administering, to a mammal in need thereof, a therapeutically effective amount of a composition comprising at least one of the compound according to any of claims 1 - 42 and the pharmaceutical composition according to claim 43.
49. A method of screening for modulator of a Tie-2 kinase, the method comprising combining either a composition comprising at least one of the compound according to any of claims 1 - 42 and the pharmaceutical composition according to claim 43, and at least one candidate agent and determining the effect of the candidate agent on the activity of said kinase.
50. A method of inhibiting proliferative activity in a cell, the method comprising administering to said cell an effective amount of at least one of the compound according to any of claims 1 - 42 and the pharmaceutical composition according to claim 43.
CA2517291A 2003-03-19 2004-03-19 Ortho-substituted aryl and heteroaryl tie-2 modulators and methods of use Expired - Fee Related CA2517291C (en)

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CA2517291C (en) 2012-05-08

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