CA2326675A1 - Isolated peptides which bind to hla-b35 molecules - Google Patents

Isolated peptides which bind to hla-b35 molecules Download PDF

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Publication number
CA2326675A1
CA2326675A1 CA002326675A CA2326675A CA2326675A1 CA 2326675 A1 CA2326675 A1 CA 2326675A1 CA 002326675 A CA002326675 A CA 002326675A CA 2326675 A CA2326675 A CA 2326675A CA 2326675 A1 CA2326675 A1 CA 2326675A1
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Prior art keywords
hla
peptide
nucleic acid
isolated
seq
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French (fr)
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Annie Ooms
Gerard De Giovanni
Sandra Morel
Benoit Van Den Eynde
Thierry Boon-Falleur
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Universite de Liege ULG
Ludwig Institute for Cancer Research Ltd
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/04Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
    • A61K38/08Peptides having 5 to 11 amino acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/0004Oxidoreductases (1.)
    • C12N9/0055Oxidoreductases (1.) acting on diphenols and related substances as donors (1.10)
    • C12N9/0057Oxidoreductases (1.) acting on diphenols and related substances as donors (1.10) with oxygen as acceptor (1.10.3)
    • C12N9/0059Catechol oxidase (1.10.3.1), i.e. tyrosinase
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/02Immunomodulators
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70503Immunoglobulin superfamily
    • C07K14/70539MHC-molecules, e.g. HLA-molecules
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Abstract

The invention relates to peptides which bind to HLA-B35 molecules, leading t o recognition and lysis of the resulting complexes by cytolytic T cells. Also a part of the invention are nucleic acid molecules which encode these peptides , and uses of each of these. The molecules are derived, in some cases, from tyrosinase, and portions of the tyrosinase molecule and portions of nucleic acid molecules which encode tyrosinase are also a part of the invention.</SD OAB>

Description

FIELD OF THE INVENTION
This invention relates to peptides which are presented by MHC molecules, leading to recognition by cytolytic T cells. More specifically, it relates to peptides which bind to HLA-B35 molecules, and are nonamers.
BACKGROUND AND PRIOR ART
The process by which the mammalian immune system recognizes and reacts to foreign or alien materials is a complex one. An important facet of the system is the T
cell response.
This response requires that T cells recognize and interact with complexes of cell surface molecules, referred to as human leukocyte antigens ("HLA"), or major histocompatibility complexes ("MHCs"), and peptides. The peptides are derived from larger molecules which are processed by the cells which also present the HLA/MHC molecule. See in this regard Male et al., Advanced Immunolo~v (J.P. Lipincott Company, 1987), especially chapters 6-10. The interaction of T cell and complexes of HLA/peptide is restricted, requiring a T cell specific for a particular combination of an HLA molecule and a peptide. If a specific T
cell is not present, there is no T cell response even if its partner complex is present. Similarly, there is no response if the specific complex is absent, but the T cell is present. This mechanism is involved in the immune system's response to foreign materials, in autoimmune pathologies, and in responses to cellular abnormalities. Much work has focused on the mechanisms by which proteins are processed into the HLA binding peptides. See, in this regard, Barinaga, Science 257:880 ( 1992);
Fremont et al., Science 257:919 ( 1992); Matsumura et al., Science 257:927 ( 1992); Latron et al., Science 257:964 (1992).
The mechanism by which T cells recognize cellular abnormalities has also been implicated in cancer. For example, in PCT application PCTlLJS92/04354, filed May22, 1992, published on November 26, 1992, and incorporated by reference, a family of genes is disclosed, which are processed into peptides which, in turn, are expressed on cell surfaces, which can lead to lysis of the tumor cells by specific CTLs. The genes are said to code for "tumor rejection antigen precursors" or "TRAP" molecules, and the peptides derived therefrom are referred to as "tumor rejection antigens" or "TRAs". See Traversari et al., Immuno entics 35:145 (1992); van der Bruggen et al., Science 254:1643 (1991), both of which are incorporated by reference for further information on this family of genes.
In U.S. Patent No. 5,405,940, the disclosure of which is incorporated by reference, nonapeptides are taught which bind to the HLA-A1 molecule. The patent teaches that, given the known specificity of particular peptides for particular HLA molecules, one should expect a particular peptide to preferentially bind one particular HLA molecule, but not others. This is important, because different individuals possess different HLA phenotypes. As a result, while identification of a particular peptide as being a partner for a specific HLA
molecule or class of HLA molecules has diagnostic and therapeutic ramifications, these are only relevant for individuals with that particular HLA phenotype. There is a need for further work in the area, because many cellular abnormalities are not restricted to one particular HLA
phenotype, and targeted therapy requires some knowledge of the phenotype of the abnormal cells at issue.
The enzyme tyrosinase catalyzes the reaction converting tyrosine to dehydroxyphenylalanine or "DOPA" and appears to be expressed selectively in melanocytes (Muller et al., EMBO J 7:2715 (1988)). An early report of cDNA for the human enzyme is found in Kwon, U.S. Patent No. 4, 898,814. A later report by Bouchard et al., J. Exp. Med.
169:2029 (1989) presents a slightly different sequence. A great deal of effort has gone into identifying inhibitors for this enzyme, as it has been implicated in pigmentation diseases. Some examples of this literature include Jinbow, W09116302; Mishima et al., U.S.
Patent No. 5,077,059, and Nazzaropor, U.S. Patent No. 4,818,768. The artisan will be familiar with other references which teach similar materials.
Various U.S. Patent Applications incorporated by reference, teach that tyrosinase may be treated in a manner similar to a foreign antigen or a TRAP molecule - i.e., it was found that in certain cellular abnormalities, such as melanoma, tyrosinase is processed and a peptide derived therefrom forms a complex with HLA molecules on certain abnormal cells. These complexes were found to be recognized by cytolytic T cells ("CTLs"), which then lyse the presenting cells.
For example, allowed patent application Serial No. 08/583,238, filed January S, 1996, teaches peptides which are derived from tyrosinase, and which complex to HLA-A2 and HLA-B44 molecules. Additional information on peptides derived from tyrosinase which are presented by HLA molecules may be found in U.S. Patent No. 5,487,974, and patent applications Serial No. 08/203,054, filed February 28, 1994, Serial No. 08/081,673, filed June 23, 1993 and Serial No. 07/994,928, filed December 22, 1992, and now abandoned. All of these references are incorporated by reference.
It is known that HLA-B35 molecules present peptides, with the resulting complexes being recognized by CTLs. See, in this regard, allowed U.S. patent application Serial No. 08/718, 964, filed September 26, 1996, and incorporated by reference.
Other information on presentation by HLA-B35 molecules may be found in, e.g., Rammensee, et al., Immuno enetics 41:171 (1995), page 207 in particular, incorporated by reference. Also see Mason, et al., Tissue Antigens S I :417-465 (1998) incorporated by reference.
Page 458 lists the amino acid sequences for the known HLA-B35 alleles, and shows that there is a great deal of identity there between.
New peptides have been identified which bind to HLA-B35 molecules, and are then recognized by CTLs. It is these peptides, and their use, which constitute the invention.
While derived from tyrosinase, the peptides of the invention need not be derived therefrom, as will be clear to the skilled artisan, and which will be seen from the disclosure which follows.
DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS

The melanoma cell line LG2-MEL, described by Degiovanni, et al., Eur. J.
Immunol.
18:671-676 ( 1988), is recognized by autologous cytolytic T lymphocytes. At least three antigens are presented on its surface and are recognized by these CTLs; however, none of these antigens have been isolated or otherwise described. These experiments describe how the peptide recognized by "CTL 35-24" was identified.
First, in experiments not described herein, two monoclonal antibodies against HLA-B
and HLA-C molecules were combined with CTL 35-24 and cell line LG2-MEL. These antibodies are described by Rebai, et al, Tissue Anti ens 22:107-117 (1983), and Yang, et al., Immuno eg netics 19:217-231 ( 1984) both of which are incorporated by reference. It was found that the antibodies inhibited lysis of LG2-MEL by CTL 35-24. Essentially, this was accomplished by adding dilutions of antibody (1/3-1/80) to the cytotoxicity assay. Since prior HLA typing had identified HLA-A24, A32, B35, B44, and Cw*04 as the HLA
molecules that the melanoma cell line presents, it was clear that the presenting molecule was either B35, B44, or Cw*04.
It is well known that sublines of cancer cell lines can be derived, which present less than all of the HLA molecules of the parent line. One such subline of LG2-MEL, i.e.
LG2-MEL 220, was known, which had lost expression of HLA-B35. CTL 35-24 failed to lyse this subline, suggesting that the presenting molecule is HLA-B35.
Subsequently, the cDNA for the HLA-B35 molecule was isolated, and sequenced, and found to be allelic subtype HLA-B*3503. This subtype differs marginally from the other known HLA subtypes, as can be seen from Mason et al., supra. Hence, it is believed that the allelic subtypes are equivalent for purposes of peptide presentation As indicated in the "BACKGROUND" section, supra, melanoma cells are known to express a number of genes which are either not expressed or are expressed only in a restricted number of normal cells. These genes include MAGE genes, BAGE, GAGE ( 1-6), RAGE ( 1-4), LAGE, PRAME, tyrosinase, Melan-A, NY-ESO-1, pme/17, CASP-8, MUM-1, and gp100.
Experiments were carried out to determine if the antigen presented by the HLA-B35 molecule was processed from one of these genes. To do this, cDNA for each of the above was obtained, following standard methods, and vectors prepared. The vectors were used to transfect COS cells, which were also transfected with cDNA for the HLA-B * 3503 molecule expressed by LG2-MEL.
The cDNA used (i.e., cDNA for HLA-B* 3503), was obtained from a cDNA library prepared from BB 49-SCCHN cells. This cell line is described by Mandruzzato, et al, J.
Exn. Med.
186(5):785-793 (1997), incorporated by reference. The transfections were carried out using Song of each construct, described sera, using the well known DEAE/dextran method. Twenty four hours after transfection, CTL 35-24 (1500 cells), was added, and TNF
production was measured, 24 hours later, using standard methods. See Traversari, et al, Immuno enetics 35:145-152( 1992). Controls were used including cell line LG2-MEL 5-35 (positive control), and COS cells transfected with HLA-B*3503 alone, or the melanoma associated gene alone. Only those cells which expressed both tyrosinase and HLA-B*3503 stimulated TNF
production.

Once tyrosinase was identified as the processed molecule, studies were undertaken to determine the identity of the peptide presented by HLA-B*3503. To do this, fragments of tyrosinase cDNA were prepared, following Wolfel, et al., Eur. J. Immunol.
24:759-764 (1994), and Brichard, et al., Eur. J. Immunol. 26:224-230 (1996), both of which are incorporated by reference, as well as U.S. Patent No. 5,487,974, also incorporated by reference. SEQ ID NO:
1 in this patent is SEQ ID NO: 40 of this application.
The same TNF assay as is described in example 2, supra, was used, except fragments of tyrosinase cDNA, rather than complete cDNA molecules, were used. Three fragments were positive, and these corresponded to nucleotides 1-1086, 427-1134, and 703-1134 of the coding region of tyrosinase cDNA. A fragment corresponding to position 574-831 was negative, leading to the conclusion that nucleotides 831-1086 encoded for the presented antigen. These correspond to amino acids 270-362 of tyrosinase, whose amino acid sequence is known. This amino acid sequence was compared to known peptides, which bind to HLA-B*3501, and its binding motif, as described by Rammensee, et al., supra, incorporated by reference. This reference describes a binding motif for HLA-B35 which is a nonapeptide, where Pro is found at position 2, and Tyr is found at position 9. For decapeptides, Ramensee, et al, gives P2 and Y10 as anchors. HLA-B*3501 was used because no information was found in the art for HLA-B*3503. Ramensee et al. also gives Phe, Met, Leu, and Ile as auxiliary anchors for P9.
The peptide defined by amino acid sequence LPSSADVEF (SEQ ID NO: 1) satisfies these requisites, and is found at amino acids 312-320 of tyrosinase. Its ability to stimulate lysis was tested by synthesizing the peptide, adding it to autologous lymphoblastoid cell line LG2-EBV
which expresses HLA-B*3503, and then adding CTL 35-24. Cell line HA7-EBV was also tested. This line expresses HLA B*3501. A 5' Cr release assay was used, wherein cells were incubated with varying concentrations of the peptide of SEQ ID NO: 1. See U.S.
Patent No.
5,519,117, incorporated by reference, for details of the assay. The 5' Cr labeled cells were incubated for 30 minutes with the peptide, after which CTL 35-24 was added, in an effector (CTL) target (LG2-EBV) ratio of 5:1. The 5' Cr release was measured after 3.5 hours.
The results are shown in figure 1. It is noted that the peptide provoked lysis of both types of cells, indicating that the peptide bound to both HLA-B* 3501 and B*3503. A
dose of 1nM
of peptide gave half maximal lysis of LG2-EBV cells and a dose of about 1 OnM
of peptide gave half maximal lysis of HA7-EBV cells.
The foregoing examples describe the invention, which are peptides which bind to HLA-B35 molecules. These peptides are of formula Leu Pro Xaa Xaa Xaa Xaa Xaa Xaa Phe (SEQ ID NO: 2). Within this genus of peptides, those with position 3 as Ser, position 4 as Ser, position 5 as Ala, or position 6 as Asp, are preferred (SEQ ID NOS: 3-6).
Peptides in accordance with the invention may have one or more of positions 3 - 6 as defined above.
Positions 7 and 8 may be any amino acid. Also a part of the invention are peptides which correspond to the above referenced peptide, but are flanked at the N and C
termini to no more than amino acids 270-312 and 321-362 of tyrosinase. In other words, peptides whose amino acids consist of no more than amino acids 270-311, concatenated to SEQ ID NO:
2, which is then concatenated to amino acids 321-362, respectively. Hence, peptides which consist of, e.g., amino acids 290-311 of tyrosinase, followed by SEQ ID NO: 2, followed by amino acids 321-340 of tyrosinase, are a part of the invention. Preferably, peptides no longer than about 16 amino acids and which comprise SEQ ID NO: 2 or SEQ ID NO: 1, or any of SEQ ID NOS: 4-6, are a part of the invention.
Also a facet of the invention are combinations of peptides which include at least the peptide of SEQ ID NO: 2, preferably one of the peptides of SEQ ID NOS: 1 and 3-6, together with one or more additional MHC or HLA binding peptides. It is known that individuals generally express six different HLA molecules on their cell surfaces. As the review of the art in the "BACKGROUND" section indicates, peptides which bind to other HLA
molecules are known, as are other peptides which bind to HLA-B35 molecules. One can thus "customize"

WO 00l2I551 PCT/US99I23038 compositions comprising two or more MHC binding peptides, wherein at least one of these binding peptides is a peptide defined by SEQ ID NOS: 1-6.
Also a part of the invention are nucleic acid molecules which encode the peptides of the invention, such as a nucleic acid molecule consisting of nucleotides which encode no more than amino acids 270-362 of tyrosinase, and no less than a peptide as defined by SEQ ID NO: 2, or more preferably, one of SEQ ID NOS: 1 and 3-6. These nucleic acid molecules can be incorporated into expression vectors, and the nucleic acid molecules or vectors can be used to transform or transfect cells; cell lines, and cell strains, be these eukaryotic or prokaryotic. They can also be used in combination with nucleic acid molecules which encode an MHC molecule, such as an HLA-B35 molecule, such as HLA B*3501 or HLA-B*3503.
The peptides and nucleic acid molecules of the invention have various uses, which are also a part of the invention. For example, in addition to their usefulness in therapeutic applications, such as the generation of cytolytic T cells, either in vitro or in vivo, which specifically lyse pathogenic cells, the peptides can be used to identify HLA-B35 positive cells, or to remove HLA-B35 positive cells from mixtures containing such cells. The nucleic acid molecules can be used, inter alia, as probes to identify cells which are expressing tyrosinase.
Also a part of the invention is a multicomponent complex useful, e.g., in isolating cytolytic T cells specific for a particular target, from a sample. The complex comprises a first binding partner and a second binding partner, wherein the first and second binding partner are specific for each other. These can be, e.g., avidin or streptavidin and biotin, an antibody or a binding portion of an antibody specific to biotin, and so forth. The key feature is that the second binding partner must be bound to a plurality of complexes of an MHC molecule, a 132 microglobulin molecule and a peptide which binds specifically to said MHC
molecule, and the multicomponent complex must be labeled. The MHC molecules are preferably HLA
molecules, such as HLA-B35 molecules, but, it will be understood by the artisan of ordinary skill that any HLA molecule could be used. With respect to the peptides of interest, many references, including review articles, U.S. and non-U.S. patents, and so forth describe peptides beyond SEQ
ID NOS: 2-6 and their binding partner HLA molecule. All are encompassed by the invention.
Exemplary peptides and their HLA molecule partners are presented later in this application.
Preferably, the second binding partner is biotin, but it may also be, e.g., an antibody which is specific for a component of the HLA/B2 microglobulin/peptide complex, such as an HLA specific antibody, or a f32 microglobulin specific antibody. Similarly, the first binding partner may be e.g., recombinant or naturally occurring protein L, recombinant or naturally occurring protein A, or even a second antibody. The complex can be in soluble form, or bound, e.g., to a removable solid phase, such as a magnetic bead.
The number of HLA/132 microglobulin/peptide complexes in the large molecule of the invention may vary. It comprises at least two complexes, and preferably at least four, but more may be present as well.
The complex of binding partners and HLA/f32 microglobulin/peptide may be labeled, using any of the labels known to the art. Examples of fluorescent labels are given supra.
Enzymatic labels, such as alkaline phosphatase, metal particles, colored plastics made of synthetic materials, radioactive labels, etc., may all be used.
A third binding partner may also be used, which binds, specifically, to the first binding partner. For example, if the first binding partner is streptavidin, and the second binding partner is biotin, then the third binding partner may be a streptavidin specific antibody. When three or more binding partners are used, the label referred to supra may be attached to any of the binding partners so long as engagement with the HLA/132 microglobulin/peptide complexes is not impaired.
The complexes may be used, e.g., to identify or to isolate cytolytic T cells present in a sample, where these cells are specific for the HLA/132 microglobulin/peptide complex. As the examples show, such cytolytic T cells bind to the immunocomplexes of the invention. In a preferred embodiment, the sample being tested is treated with a reactant which specifically binds to a cytolytic T cell, wherein said label provides a detectable signal. The sample, including labeled CTLs, is then contacted to the complex, where it binds, and can be separated via any of the standard, well known approaches to cell separation. Preferably, FACS is used, but other separation methodologies will be known to the skilled artisan as well. The peptide used is left to the needs of the skilled artisan, and will depend, e.g., on the nature of the specific MHC
system under consideration, a table of exemplary, but no means the only, peptides for which CTLs are known, follows. These are also set forth in SEQ ID NOS: 7-38.
Gene MHC Peptide SEQ ID

HLA-Cwl6 SAYGEPRKL g BAGE HLA-Cwl6 AARAVFLAL 12 GAGE-1,2 HLA-Cwl6 ~ YRPRPRRY 13 GntV HLA-A2 VLPDVFIRC(V) 15 CDK4 HLA-A2 ACDPHSGHFV 1 g 13-catenin HLA-A24 SYLDSGIHF 20 Tyrosinase HLA-A2 MLLAVLYCL 22 Melan-AMart-~HLA-A2 (E)AAGIGILTV 30 gp100P"'e"" HLA-A2 KTWGQYWQV 32 MAGE-6 HLA-Cwl6 KISGGPRISYPL 3g Additional peptides may be found, e.g., in U.S. patent application Serial Nos.
08/672,351, 08/669,590, 08/487,135, now U.S. PatentNo. 08/530,569, and 08/880,693, and 08/718,964, now U.S. Patent No. , all of which are incorporated by reference.
A further aspect of the invention are so-called "mini genes" which carry information necessary to direct synthesis ofpeptides via cells into which the mini genes are transfected. Mini genes can be designed which encode one or more antigenic peptides, and are then transferred to host cell genomes via transfection with plasmids, or via cloning into vaccinia or adenoviruses.
See, e.g., Zajac, et al., Int. J. Cancer 71:496 (1997), incorporated by reference.
The peptides ofthe invention may be combined with peptides from other tumor rej ection antigens to form 'polytopes'. Exemplary peptides include those listed in the applications set forth supra.
Additional peptides which can be used are those described in the following references, all of which are incorporated by reference: U.S. Patent Nos. 5,405,940;
5,487,974; 5,519,117;
5,530,096; 5,554,506; 5,554,724; 5,558,995; 5,585,461; 5,589,334; 5,648,226;
and 5,683,886;
PCT International Publication Nos. 92/20356; 94/14459; 96/10577; 96/21673;
97/10837;
97/26535; and 97/31017 as well as pending U.S. Application Serial No.
08/713,354. These peptides may also be combined with peptides that complex with MHC-Class II
molecules, such as peptides derived from tumor rejection antigen precursors as is described in Serial No.
08/927,015, and a continuation in part application to Knuth et al., filed on October 2, 1998, as a CIP of Serial No. 09/062,422. This newly filed CIP is incorporated by reference.
Polytopes are groups of two or more potentially immunogenic or immune stimulating peptides, which can be joined together in various ways, to determine if this type of molecule will stimulate and/or provoke an immune response.

These peptides can be joined together directly, or via the use of flanking sequences. See Thompson et al. Proc. Natl. Acad. Sci. USA 92(13):5845-5849 (1995), teaching the direct linkage of relevant epitopic sequences. The use of polytopes as vaccines is well known. See, e.g., Gilbert et al., Nat. Biotechnol.15( 12):1280-1284 (1997); Thompson et al., supra; Thompson et al., J. Immunol. 157(2):822-826 (1996); Tam et al., J. Exp. Med. 171(1):299-306 (1990), all of which are incorporated by reference. The Tam reference in particular shows that polytopes, when used in a mouse model, are useful in generating both antibody and protective immunity.
Further, the reference shows that the polytopes, when digested, yield peptides which can be and are presented by MHCs. Tam shows this by showing recognition of individual epitopes processed from polytope 'strings' via CTLs. This approach can be used, e.g., in determining how many epitopes can be joined in a polytope and still provoke recognition and also to determine the efficacy of different combinations of epitopes.
Different combinations may be 'tailor-made' for the patients expressing particular subsets of tumor rejection antigens. These polytopes can be introduced as polypeptide structures, or via the use of nucleic acid delivery systems. To elaborate, the art has many different ways available to introduce DNA encoding an individual epitope, or a polytope such as is discussed supra. See, e.g., Allsopp et al., Eur. J.
Immunol.26(8);1951-1959(1996), incorporated by reference. Adenovirus,pox-virus,Ty-virus like particles, plasmids, bacteria, etc., can be used. One can test these systems in mouse models to determine which system seems most appropriate for a given, parallel situation in humans.
They can also be tested in human clinical trials.
Also a feature of the invention are compositions which comprise at least one of the peptides of the invention, in combination with at least one adjuvant. Such compositions can be used, e.g., to generate immune responses, preferably in humans, as part of a therapeutic regime, but also in subj ect non-human animals, to generate immune components which can then be used to treat humans, or diagnostically. The artisan of ordinary skill is familiar with such adjuvants, and thus these do not have to be set forth here.
These compositions can also include so-called co-stimulatory molecules. These are molecules which are proteins, or encode proteins, that interact with molecules on the surface of T cells, thereby co-stimulating a T cell already stimulated by formation of an MHC
molecule/antigen/T cell receptor interaction. Such co-stimulatory molecules enhance antitumor immunity, and CTL proliferation. Exemplary of such co-stimulatory molecules are those known as "B7-1" and "B7-12," or CD80 and CD86, respectively. See Zhang, et al, Proc.
Natl. Acad.
Sci. USA 95(11):6284-6289 (1998), incorporated by reference.
Such co-stimulatory molecules can be combined with, e.g. interleukins, such as IL-6 and IL-12. See Gajewski, et al, J. Immunol 154:5637-5648 (1995). As noted, supra, the co-stimulatory molecules may be administered in the form of a nucleic acid molecule. Such an approach can be useful in connection with CTL expansion for adoptive transfer immunotherapy (Wang et al, J. Immunother. Emphasis Tumor Immunol 19:1-8 (1996)). The requisite nucleic acid molecules can be administered in the form of "naked" DNA (Kim et al, Nat.
Biotechnol 15(7):641-646 (1997)), as well as in the form of recombinant vectors, such as adenovirus and pox virus vectors. See Wendtner et al, Gene Ther. 4(7):726-735 (1997). All of these systems can be adapted so that the co-stimulatory molecule is expressed together with other molecules of choice, including the peptides, adjuvant molecules, and so forth.
In addition to the foregoing, antibodies can function as co-stimulatory molecules, as these can act as ligands to cell receptors, thereby costimulating the cell. The B7 molecules discussed supra are ligands for CD28 molecules. Hence, anti CD28 antibodies, be these polyclonal, monoclonal, humanized, etc., can all act in this fashion.
In addition to B7 molecules, lymphocyte function associated antigen-1 (LFA-1 ), CD40L
and anti-CD40 antibodies can also be used as co-stimulatory molecules. These are all exemplary of the family of co-stimulatory molecules, and should not be regarded as the only possible alternatives.
Also a feature of the invention is the use of these peptides to determine the presence of cytolytic T cells in a sample. It was shown, supra, that CTLs in a sample will react with peptide/1VI~IC complexes. Hence, if one knows that CTLs are in a sample, HLA-B35 positive cells can be "lysed" by adding the peptides of the invention to HLA-B35 positive cells, such as HLA-B*3503 positive cells, and then detenmining, e.g., radioactive chromium release, TNF
production, etc. or any other of the methods by which T cell activity is determined. Similarly, one can determine whether or not specific tumor infiltrating lymphocytes ("TILs") are present in a sample, by adding one of the claimed peptides with HLA-B35 positive cells to a sample, and determining lysis of the HLA-B35 positive cells via, e.g., 5'Cr release, TNF
presence and so forth. In addition, CTL may be detected by ELI-SPOT analysis. See for example Schmittel et al. (1997). J. Immunol. Methods 210:167-174 and Lalvani et al. J. Exn Med.
126:859 (1997) or by FACS analysis of fluorogenic tetramer complexes of MHC Class I/peptide (Dunbar et al.
(1998), Current BioloQV 8:413-416. All are incorporated by reference.
Of course, the peptides may also be used to provoke production of CTLs. As was shown, supra, CTL precursors develop into CTLs when confronted with appropriate complexes. By causing such a "confrontation" as it were, one may generate CTLs. This is useful in an in vivo context, as well as ex vivo, for generating such CTLs.
Other features of the invention will be clear to the skilled artisan, and need not be repeated here.
The terms and expressions which nave been employed are used as terms of description and not of limitation, and there is no intention in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, it being recognized that various modifications are possible within the scope of the invention.

Claims (27)

1. An isolated peptide which consists of amino acid sequence Leu Pro Xaa Xaa Xaa Xaa Xaa Xaa Phe (SEQ ID NO: 2), wherein each Xaa is any amino acid.
2. The isolated peptide of claim 1, wherein at least one of the following criteria are satisfied:
the first Xaa is Ser (SEQ ID NO: 3) the second Xaa is Ser (SEQ ID NO: 4) the third Xaa is Ala (SEQ ID NO: 5}
the fourth Xaa is Asp (SEQ ID NO: 6)
3. The isolated peptide of claim l, wherein the peptide consists of the amino acid sequence of SEQ ID NO: 1.
4. The isolated peptide of claim 2, wherein the fifth amino acid is Val, or the sixth amino acid is Glu.
5. An isolated peptide the amino acid sequence of which consists of at least the amino acid sequence set forth in SEQ ID NO: 2, and no more than amino acids 270-311 of tyrosinase concatenated to SEQ ID NO:2, concatenated to no more than amino acids 321-362 of tyrosinase.
6. The isolated peptide of claim 5, consisting of amino acids 270-362 of tyrosinase.
7. Composition comprising the isolated peptide of claim 1, and an adjuvant.
8. Composition comprising the isolated peptide of claim 2, and an adjuvant.
9. Composition comprising the isolated peptide of claim 3, and an adjuvant.
10. Composition comprising the isolated peptide of claim 4, and an adjuvant.
11. Composition comprising the isolated peptide of claim 5, and an adjuvant.
12. Composition comprising the isolated peptide of claim 6, and an adjuvant.
13. Composition comprising the isolated peptide of claim 1, and a peptide which binds to an MHC Class II molecule.
14. An isolated nucleic acid molecule which encodes the isolated peptide of claim 1.
15. An isolated nucleic acid molecule which encodes the isolated peptide of claim 3.
16. An isolated nucleic acid molecule which encodes the isolated peptide of claim 5.
17. An isolated nucleic acid molecule which encodes the isolated peptide of claim 6.
18. Expression vector comprising the isolated nucleic acid molecule of claim 14, operably linked to a promoter.
19. Expression vector comprising the isolated nucleic acid molecule of claim 15, operably linked to a promoter.
20. Expression vector comprising the isolated nucleic acid molecule of claim 16, operably linked to a promoter.
21. Expression vector comprising the isolated nucleic acid molecule of claim 17, operably linked to a promoter.
22. Recombinant cell, cell line, or cell strain, comprising the isolated nucleic acid molecule of claim 14, 15, 16, or 17.
23. Recombinant cell, cell line, or cell strain, comprising the expression vector of claim 18, 19, 20, or 21.
24. The recombinant cell, cell line, or cell strain of claim 22, further comprising a nucleic acid molecule which encodes an HLA-B35 molecule.
25. The recombinant cell, cell line or cell strain of claim 23, further comprising a nucleic acid molecule which encodes an HLA-B35 molecule.
26. Composition comprising the peptide of claim l, and at least another MHC
binding peptide.
27. Kit useful in generating cytolytic T cells, comprising a separable portion of each of the isolated nucleic acid molecule of claim 14 and an isolated nucleic acid molecule which encodes an HLA-B35 molecule.
CA002326675A 1998-10-09 1999-10-04 Isolated peptides which bind to hla-b35 molecules Abandoned CA2326675A1 (en)

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US09/169,717 US6667037B1 (en) 1998-10-09 1998-10-09 Isolated peptides which bind to HLA-B35 molecules, larger peptides which contain these, nucleic acid molecules encoding peptides, and uses thereof
PCT/US1999/023038 WO2000021551A1 (en) 1998-10-09 1999-10-04 Isolated peptides which bind to hla-b35 molecules

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US20020164654A1 (en) * 2000-01-20 2002-11-07 Rosalie Luiten MAGE antigenic peptides which bind HLA-B35 and HLA-B44
FR2836684B1 (en) * 2002-03-04 2004-12-17 Inst Nat Sante Rech Med RAS MUTED PEPTIDES AND THEIR USE IN IMMUNOTHERAPY
DE10313819A1 (en) * 2003-03-24 2004-10-07 Immatics Biotechnologies Gmbh Tumor-associated peptides binding to MHC molecules
US20050233448A1 (en) * 2003-06-18 2005-10-20 Oh Steve K W Materials and methods to produce stem cells
US20050032208A1 (en) * 2003-06-18 2005-02-10 Oh Steve Kah Weng Materials and methods to produce stem cells
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AU2014227019B2 (en) * 2013-03-08 2016-10-27 Taiho Pharmaceutical Co., Ltd. Novel peptide having 5 linked CTL epitopes
HUE050164T2 (en) 2013-10-21 2020-12-28 Taiho Pharmaceutical Co Ltd Novel four-ctl epitope-joined peptide

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US4898814A (en) 1986-10-06 1990-02-06 Donald Guthrie Foundation For Medical Research, Inc. A cDNA clone for human tyrosinase
US5744316A (en) 1992-12-22 1998-04-28 Ludwig Institute For Cancer Research Isolated, tyrosinase derived peptides and uses thereof
US5530096A (en) 1992-12-22 1996-06-25 Ludwig Institute For Cancer Research Isolated, tyrosinase derived peptides and uses thereof
US5747271A (en) 1992-12-22 1998-05-05 Ludwig Institute For Cancer Research Method for identifying individuals suffering from a cellular abnormality some of whose abnormal cells present complexes of HLA-A2/tyrosinase derived peptides, and methods for treating said individuals
US5487974A (en) 1992-12-22 1996-01-30 Ludwig Institute For Cancer-Research Method for detecting complexes containing human leukocyte antigen A2 (HLA-A2) molecules and a tyrosinase drived peptide on abnormal cells
US5519117A (en) * 1992-12-22 1996-05-21 Ludwig Institute For Cancer Research Isolated, tyrosinase derived peptides and uses thereof
US5633234A (en) * 1993-01-22 1997-05-27 The Johns Hopkins University Lysosomal targeting of immunogens
US5648226A (en) * 1993-07-22 1997-07-15 Ludwig Institute For Cancer Research Isolated peptides derived from tumor rejection antigens, and their use
CA2173138A1 (en) * 1993-10-19 1995-04-27 Masafumi Takiguchi Peptide capable of inducing immune response against hiv and aids preventive or remedy containing the peptide

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