CA2264581A1 - Characterising dna - Google Patents
Characterising dnaInfo
- Publication number
- CA2264581A1 CA2264581A1 CA002264581A CA2264581A CA2264581A1 CA 2264581 A1 CA2264581 A1 CA 2264581A1 CA 002264581 A CA002264581 A CA 002264581A CA 2264581 A CA2264581 A CA 2264581A CA 2264581 A1 CA2264581 A1 CA 2264581A1
- Authority
- CA
- Canada
- Prior art keywords
- sub
- fragment
- sticky end
- sampling
- sequence
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1096—Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Saccharide Compounds (AREA)
- Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
Abstract
A method for characterising cDNA, which comprises: (a) cutting a sample comprising a population of one or more cDNAs or isolated fragments thereof, each having a strand complementary to the 3' poly-A terminus of an mRNA and bearing a tail, with a first sampling endonuclease at a first sampling site of known displacement from a reference site proximal to the tail to generate from each cDNA or isolated fragment thereof a first and second sub-fragment, each comprising a sticky end sequence of predetermined length and unknown sequence, the first sub-fragment bearing the tail; (b) sorting either the first or second sub-fragments into sub-populations according to their sticky end sequence and recording the sticky end sequence of each sub-population as the first sticky end; (c) cutting the sub-fragments in each sub-population with a second sampling endonuclease, which is the same as or different from the first sampling endonuclease, at a second sampling site of known displacement from the first sampling site to generate from each sub-fragment a further sub-fragment comprising a second sticky end sequence of predetermined length and unknown sequence; and (d) determining each second sticky end sequence; wherein the aggregate length of the first and second sticky end sequences of each sub-fragment is from 6 to 10; and wherein the sequences and relative positions of the reference site and first and second sticky ends characterise the or each cDNA.
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
GBGB9618544.2A GB9618544D0 (en) | 1996-09-05 | 1996-09-05 | Characterising DNA |
GB9618544.2 | 1996-09-05 | ||
PCT/GB1997/002403 WO1998010095A1 (en) | 1996-09-05 | 1997-09-05 | Characterising dna |
Publications (2)
Publication Number | Publication Date |
---|---|
CA2264581A1 true CA2264581A1 (en) | 1998-03-12 |
CA2264581C CA2264581C (en) | 2003-11-11 |
Family
ID=10799468
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA002264581A Expired - Fee Related CA2264581C (en) | 1996-09-05 | 1997-09-05 | Characterising dna |
Country Status (12)
Country | Link |
---|---|
US (1) | US6225077B1 (en) |
EP (1) | EP0927267B1 (en) |
JP (1) | JP3863189B2 (en) |
CN (1) | CN1118581C (en) |
AT (1) | ATE215994T1 (en) |
AU (1) | AU721861B2 (en) |
CA (1) | CA2264581C (en) |
DE (1) | DE69711895T2 (en) |
GB (1) | GB9618544D0 (en) |
IL (1) | IL128809A (en) |
NZ (1) | NZ334426A (en) |
WO (1) | WO1998010095A1 (en) |
Families Citing this family (39)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN100434531C (en) * | 1997-01-15 | 2008-11-19 | X齐里昂有限两合公司 | Mass label linked hybridisation probes |
US6699668B1 (en) | 1997-01-15 | 2004-03-02 | Xzillion Gmbh & Co. | Mass label linked hybridisation probes |
GB9707980D0 (en) * | 1997-04-21 | 1997-06-11 | Brax Genomics Ltd | Characterising DNA |
US6054276A (en) | 1998-02-23 | 2000-04-25 | Macevicz; Stephen C. | DNA restriction site mapping |
US6136537A (en) * | 1998-02-23 | 2000-10-24 | Macevicz; Stephen C. | Gene expression analysis |
US7399844B2 (en) * | 1998-07-09 | 2008-07-15 | Agilent Technologies, Inc. | Method and reagents for analyzing the nucleotide sequence of nucleic acids |
WO2000029621A2 (en) * | 1998-11-16 | 2000-05-25 | Genelabs Technologies, Inc. | Method for measuring target polynucleotides and novel asthma biomolecules |
US8367322B2 (en) | 1999-01-06 | 2013-02-05 | Cornell Research Foundation, Inc. | Accelerating identification of single nucleotide polymorphisms and alignment of clones in genomic sequencing |
JP2002534098A (en) | 1999-01-06 | 2002-10-15 | コーネル リサーチ ファンデーション インク. | Accelerated Identification of Single Nucleotide Polymorphisms and Alignment of Clones in Genome Sequencing |
AU5557400A (en) * | 1999-03-18 | 2001-01-31 | Complete Genomics As | Methods of cloning and producing fragment chains with readable information content |
CN1176212C (en) * | 1999-05-10 | 2004-11-17 | 东洋钢板株式会社 | Methods for constructing DNA library and support carrying DNA library immobilized thereon |
US8137906B2 (en) | 1999-06-07 | 2012-03-20 | Sloning Biotechnology Gmbh | Method for the synthesis of DNA fragments |
DE19925862A1 (en) * | 1999-06-07 | 2000-12-14 | Diavir Gmbh | Process for the synthesis of DNA fragments |
WO2001021840A2 (en) * | 1999-09-23 | 2001-03-29 | Gene Logic, Inc. | Indexing populations |
JP3668075B2 (en) * | 1999-10-12 | 2005-07-06 | 光夫 板倉 | Suspension system for determining genetic material sequence, method for determining genetic material sequence using the suspension system, and SNPs high-speed scoring method using the suspension system |
AU1812801A (en) * | 1999-12-06 | 2001-06-12 | Pioneer Hi-Bred International, Inc. | Short shared nucleotide sequences |
JP2001204463A (en) * | 2000-01-27 | 2001-07-31 | Toyo Kohan Co Ltd | Support for immobilizing nucleotide |
AU2001232140A1 (en) * | 2000-02-17 | 2001-08-27 | Complete Genomics As | A method of mapping restriction endonuclease cleavage sites |
US6468749B1 (en) * | 2000-03-30 | 2002-10-22 | Quark Biotech, Inc. | Sequence-dependent gene sorting techniques |
DE10060827A1 (en) * | 2000-12-07 | 2002-06-13 | Basf Lynx Bioscience Ag | Methods of coding hybridization probes |
EP1423529B1 (en) * | 2001-01-24 | 2013-11-20 | Genomic Expression APS | Assay for analyzing gene expression |
US20030143612A1 (en) * | 2001-07-18 | 2003-07-31 | Pointilliste, Inc. | Collections of binding proteins and tags and uses thereof for nested sorting and high throughput screening |
US7189509B2 (en) * | 2001-08-16 | 2007-03-13 | Zhifeng Shao | Analysis of gene expression profiles using sequential hybridization |
ATE414767T1 (en) | 2001-11-22 | 2008-12-15 | Sloning Biotechnology Gmbh | NUCLEIC ACID LINKERS AND THEIR USE IN GENE SYNTHESIS |
US7291460B2 (en) | 2002-05-31 | 2007-11-06 | Verenium Corporation | Multiplexed systems for nucleic acid sequencing |
US7563600B2 (en) | 2002-09-12 | 2009-07-21 | Combimatrix Corporation | Microarray synthesis and assembly of gene-length polynucleotides |
FR2852605B1 (en) * | 2003-03-18 | 2012-11-30 | Commissariat Energie Atomique | PROCESS FOR PREPARING DNA FRAGMENTS AND ITS APPLICATIONS |
US7642064B2 (en) | 2003-06-24 | 2010-01-05 | Ventana Medical Systems, Inc. | Enzyme-catalyzed metal deposition for the enhanced detection of analytes of interest |
US20040265883A1 (en) * | 2003-06-27 | 2004-12-30 | Biocept, Inc. | mRNA expression analysis |
DK1557464T3 (en) | 2004-01-23 | 2011-01-24 | Sloning Biotechnology Gmbh | Enzymatic preparation of nucleic acid molecules |
FR2890859B1 (en) * | 2005-09-21 | 2012-12-21 | Oreal | DOUBLE-STRANDED RNA OLIGONUCLEOTIDE INHIBITING TYROSINASE EXPRESSION |
US9115352B2 (en) | 2008-03-31 | 2015-08-25 | Sloning Biotechnology Gmbh | Method for the preparation of a nucleic acid library |
CN101942509B (en) * | 2010-06-10 | 2013-02-27 | 广州医学院第一附属医院 | Method for detecting common/identical DNA sequence in two unknown DNA fragments |
WO2013012674A1 (en) | 2011-07-15 | 2013-01-24 | The General Hospital Corporation | Methods of transcription activator like effector assembly |
US9890364B2 (en) | 2012-05-29 | 2018-02-13 | The General Hospital Corporation | TAL-Tet1 fusion proteins and methods of use thereof |
EP3789405A1 (en) | 2012-10-12 | 2021-03-10 | The General Hospital Corporation | Transcription activator-like effector (tale) - lysine-specific demethylase 1 (lsd1) fusion proteins |
AU2014214719B2 (en) | 2013-02-07 | 2020-02-13 | The General Hospital Corporation | Tale transcriptional activators |
ITUB20155686A1 (en) * | 2015-11-18 | 2017-05-18 | Fondazione St Italiano Tecnologia | Nucleic acid detection procedure and related kit. |
CN107557355A (en) * | 2016-07-01 | 2018-01-09 | Pgi股份有限公司 | The method of construction circular template and detection DNA molecular |
Family Cites Families (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CA2036946C (en) * | 1990-04-06 | 2001-10-16 | Kenneth V. Deugau | Indexing linkers |
GB9214873D0 (en) * | 1992-07-13 | 1992-08-26 | Medical Res Council | Process for categorising nucleotide sequence populations |
US5695934A (en) | 1994-10-13 | 1997-12-09 | Lynx Therapeutics, Inc. | Massively parallel sequencing of sorted polynucleotides |
EP0735144B1 (en) * | 1995-03-28 | 2002-06-05 | Japan Science and Technology Corporation | Method for molecular indexing of genes using restriction enzymes |
US5866330A (en) * | 1995-09-12 | 1999-02-02 | The Johns Hopkins University School Of Medicine | Method for serial analysis of gene expression |
US5871697A (en) * | 1995-10-24 | 1999-02-16 | Curagen Corporation | Method and apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing |
-
1996
- 1996-09-05 GB GBGB9618544.2A patent/GB9618544D0/en active Pending
-
1997
- 1997-09-05 CN CN97198893A patent/CN1118581C/en not_active Expired - Fee Related
- 1997-09-05 JP JP51236998A patent/JP3863189B2/en not_active Expired - Fee Related
- 1997-09-05 IL IL12880997A patent/IL128809A/en not_active IP Right Cessation
- 1997-09-05 DE DE69711895T patent/DE69711895T2/en not_active Expired - Fee Related
- 1997-09-05 AT AT97937754T patent/ATE215994T1/en not_active IP Right Cessation
- 1997-09-05 US US09/254,023 patent/US6225077B1/en not_active Expired - Fee Related
- 1997-09-05 AU AU40274/97A patent/AU721861B2/en not_active Ceased
- 1997-09-05 WO PCT/GB1997/002403 patent/WO1998010095A1/en active IP Right Grant
- 1997-09-05 CA CA002264581A patent/CA2264581C/en not_active Expired - Fee Related
- 1997-09-05 NZ NZ334426A patent/NZ334426A/en unknown
- 1997-09-05 EP EP97937754A patent/EP0927267B1/en not_active Expired - Lifetime
Also Published As
Publication number | Publication date |
---|---|
EP0927267A1 (en) | 1999-07-07 |
IL128809A (en) | 2002-09-12 |
ATE215994T1 (en) | 2002-04-15 |
AU721861B2 (en) | 2000-07-13 |
CN1118581C (en) | 2003-08-20 |
AU4027497A (en) | 1998-03-26 |
WO1998010095A1 (en) | 1998-03-12 |
CN1234076A (en) | 1999-11-03 |
JP3863189B2 (en) | 2006-12-27 |
GB9618544D0 (en) | 1996-10-16 |
CA2264581C (en) | 2003-11-11 |
DE69711895T2 (en) | 2002-11-14 |
US6225077B1 (en) | 2001-05-01 |
JP2000517192A (en) | 2000-12-26 |
DE69711895D1 (en) | 2002-05-16 |
EP0927267B1 (en) | 2002-04-10 |
IL128809A0 (en) | 2000-01-31 |
NZ334426A (en) | 2000-09-29 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
EEER | Examination request | ||
MKLA | Lapsed |